Click here to switch to the map view.

The map label for this gene is smpA [H]

Identifier: 78047115

GI number: 78047115

Start: 1757757

End: 1758152

Strand: Reverse

Name: smpA [H]

Synonym: XCV1559

Alternate gene names: 78047115

Gene position: 1758152-1757757 (Counterclockwise)

Preceding gene: 78047117

Following gene: 78047112

Centisome position: 33.95

GC content: 60.86

Gene sequence:

>396_bases
ATGCGTAATCTCCTGCTGGTCGCCGCCATTGCTCTTTCCACCGCTGGCTGCGGCATCATCTACAAGCAGCCGATCTACCA
GGGCAATCTGATCAAACAGAATGCCGTGGAGCAACTGCAGGTAGGCCAGAGCAAGCAGCAGGTCAGTGCGTTGCTGGGCA
CGCCCTCGATCCCCGACCCGTTCCATGCCCAGCGCTGGGACTACACCTCCACGCAGCGCGTGGACCGTCTGGCGCGTACC
GAGATCAAGAATTTCACCGTCTTCTTCGAGAACGAACAGGTCGCACGCTGGGAAGGCGACTATTTCCCGTCGCAGGACGA
GCAACTGGCCAAAGCCGCGCCCAAGCAGTTTGGCCGCAACCTGGCCCGCGACAAGAAGAAGCAACGCGGCCGTTGA

Upstream 100 bases:

>100_bases
TCTCCGTTCATTGGCGATTTAGCGCCAGCTGCCATCAAACGGGTCGCGGCGACCGGCGGAAGTGTATCATCGGCGTGATT
TCCTCAGCACTTAATCCCCG

Downstream 100 bases:

>100_bases
TGCGGTTACCGGGCGGTGTCGTGATCGCCTGATCGGACCCAAAACGCATCCCTTCGAACGGATGCGTTTTTCGTTTTGCC
TGATGCCAACAGAGCGCTTC

Product: putative outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 131; Mature: 131

Protein sequence:

>131_residues
MRNLLLVAAIALSTAGCGIIYKQPIYQGNLIKQNAVEQLQVGQSKQQVSALLGTPSIPDPFHAQRWDYTSTQRVDRLART
EIKNFTVFFENEQVARWEGDYFPSQDEQLAKAAPKQFGRNLARDKKKQRGR

Sequences:

>Translated_131_residues
MRNLLLVAAIALSTAGCGIIYKQPIYQGNLIKQNAVEQLQVGQSKQQVSALLGTPSIPDPFHAQRWDYTSTQRVDRLART
EIKNFTVFFENEQVARWEGDYFPSQDEQLAKAAPKQFGRNLARDKKKQRGR
>Mature_131_residues
MRNLLLVAAIALSTAGCGIIYKQPIYQGNLIKQNAVEQLQVGQSKQQVSALLGTPSIPDPFHAQRWDYTSTQRVDRLART
EIKNFTVFFENEQVARWEGDYFPSQDEQLAKAAPKQFGRNLARDKKKQRGR

Specific function: May have a structural role in maintaining the cell envelope integrity [H]

COG id: COG2913

COG function: function code J; Small protein A (tmRNA-binding)

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpA/omlA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007450 [H]

Pfam domain/function: PF04355 SmpA_OmlA [H]

EC number: NA

Molecular weight: Translated: 14908; Mature: 14908

Theoretical pI: Translated: 10.36; Mature: 10.36

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNLLLVAAIALSTAGCGIIYKQPIYQGNLIKQNAVEQLQVGQSKQQVSALLGTPSIPDP
CCCHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCC
FHAQRWDYTSTQRVDRLARTEIKNFTVFFENEQVARWEGDYFPSQDEQLAKAAPKQFGRN
CCCCCCCCCHHHHHHHHHHHHHHHEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHHHHH
LARDKKKQRGR
HHHHHHHHCCC
>Mature Secondary Structure
MRNLLLVAAIALSTAGCGIIYKQPIYQGNLIKQNAVEQLQVGQSKQQVSALLGTPSIPDP
CCCHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCC
FHAQRWDYTSTQRVDRLARTEIKNFTVFFENEQVARWEGDYFPSQDEQLAKAAPKQFGRN
CCCCCCCCCHHHHHHHHHHHHHHHEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHHHHH
LARDKKKQRGR
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9973334 [H]