Definition | Xanthomonas campestris pv. vesicatoria str. 85-10 chromosome, complete genome. |
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Accession | NC_007508 |
Length | 5,178,466 |
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The map label for this gene is dcp [H]
Identifier: 78047069
GI number: 78047069
Start: 1706144
End: 1708294
Strand: Reverse
Name: dcp [H]
Synonym: XCV1513
Alternate gene names: 78047069
Gene position: 1708294-1706144 (Counterclockwise)
Preceding gene: 78047071
Following gene: 78047065
Centisome position: 32.99
GC content: 62.11
Gene sequence:
>2151_bases ATGCCGTCCTACAGCATCGCCGCCCCCGCTGCCACGCAGGCCGCCACCCAAGCCAATCCCTTTTTTGCCGACAGCACGCT GCCGCTGCATTACCCGCAGTTCGACAAAATTAAGGACAGCGATTTCGCACCTGCCTTCGATGCCGGCATGGCCGAACAGT TGAAGGAAGTGGAAAAAATCGCCAACCAGAAAGCCAAGCCCAGCTTCGACAACACCATCATCGCGCTGGAAAAGAGCGGC GCCACGCTCGACCGCGCCACCACGGTGTTCTTCAATCTGGTGGGCGCAGACACCAACGACGCACGCAAGAAGTTGCAGGC CGACTATTCGGCGAAGTTCGCAGCGCACCGCGATGCGATTTCGCTCAACGGCAAGCTGTTCGCACGCATCCAGACCTTGT ACGACCAACGCGCCACGCTGGGGCTGGATGCGCAAGGCGTGCGCCTGGTCGAGAAGTACTACAGCGACTTCGTGCGCGAC GGCGCCAAGCTCTCCGACGTCGACAAGACCACGCTCAAGGCCATGAATGCCGAGCTGGCCAACCTGGGCACCACCTTCAG CCAGAACGTGCTGGCCGAAGTGAATGCTGCCGCTGTGGTCGTGGACGACGTCAGGCAGCTGGACGGTTTGTCGCAGGAGC AGATTGCCGCCGCCGCCGAAGCGGCCAAGGCGCGCAAGCTCGATGGCAAGTACGTCATTGCCTTGCTCAACACCACCGGC CAGCCGCCGCTGACCCAGCTGAAGAATCGCGAGCTGCGCAAGAGGATCTACGACGCCTCGGTGTCGCGCGGCAGCCACGG CGGCCAGTACGACAACACCGCGCTGGTGTCGCGCATCATGAAGCTGCGCGCCGACAAGGCCAAGCTGCTGGGCTTCCCCA CCTATGCCGCCTACTCGCTGGAAAACCAGACCGCCAAGACGCCCGAAGCGGTCAACGCGATGCTGGGCAAACTGGCGCCG GCCGCGGTGGCCAATGCCAAGCGCGAAGCCGCCGATCTGCAGGCCATGATCGACAAGGAACAAAAGGCTGCGCGCAAGCC GACGTTCAAGCTGGAAGCCTGGGATTGGGCCTACTACAGCGAGAAGGTGCGCCAGGCCAAGTACAACTTCGACGAATCCC AGCTCAAGCCGTACTTCGAACTGAAGAACGTGCTGGAAAATGGCGTGTTCTATGCGGCCAATCAGGAATATGGCCTGACC TTCAAACAGCGCACCGACCTGCCGACCTACCGCGACGACATCACCGTCTACGACGTGTTCGACGCGGACGGCAAGCAGCT GGCGATCTTCATTGCCGACATGTATGCGCGCGAATCCAAGCGCGGTGGCGCATGGATGAACTCCTATGTGTCGCAGTCGG AGCTGACCGGCTTCAAGCCGGTGGTGGCCAATCACCTCAACATTCCCAAGCCGCCGGCCGGCCAGCCGACGCTGCTGACC TGGGATGAGGTGACCACCATGTTCCATGAGTTCGGGCATGCGCTGCACGGCATGTTCTCCGACGTCAAATACCCGTATTT CTCCGGTACCAGCGTACCGCGCGACTTCGTCGAGTTCCCCTCGCAGGTCAACGAAATGTGGGCCGACGAACCATCCATCC TGAAGAACTACGCCAAGCATTACCAGAACGGCACCCCGATGCCGCAGGCATTGCTGGACAAGGTGATTGCCGCATCCAAG TTCAACCAGGGCTTTGCCACCACTGAATACCTGGGTGCGGCGATGCTGGATCAGAACTGGCACCAGGTCAGCGCCAGCCA GGTACCGGACGCCGCCGGCGTGATGGCATTCGAAGCCAAGGCGCTGCAGCAGGACGGCATTGCCTACGCGCCGGTGCCGC CGCGCTACAAGACCCCGTATTTCAGCCACATCATGGGCGGTTACGCGGCAGGCTACTACGCCTACATCTGGTCGGAAGTG CTGGACGCCAACACCCAGCAGTGGTTCAAGCAGCACGGTGGCCTGAGCCGCGCCAATGGCGATCGTTTCCGCAAGACCCT GCTTTCGCGCGGCGGTAGCGTGGATGCGATGGAGCTGTTCCAGAACTTTGCCGGGCATGCGCCGCAGATCGAGCCGCTGC TCGAAAAGCGCGGTCTCAGCGCGCAAGGCGGCGATGGTGCCACTCCGGAATCGCCGCAGTCCAAGCCGTAG
Upstream 100 bases:
>100_bases TGTCCCGACGGGCTGGGTTAGCCTCGGCGGTTCGAACTTTGGAGCAACTCTCTTGACCACCCGTCTCGCTTTTGCCCTGG CCGCCTCCCTGGGACTTGCC
Downstream 100 bases:
>100_bases ATCGGCTGCACGACCTGCGCGCGATCATCGGGCCGCGTGCTTGGCAACAGGATCGGCATGTCCCCTGCGGGCATGCCGAT CTCGAACACCAGACGCGACA
Product: peptidyl-dipeptidase
Products: NA
Alternate protein names: Dipeptidyl carboxypeptidase [H]
Number of amino acids: Translated: 716; Mature: 715
Protein sequence:
>716_residues MPSYSIAAPAATQAATQANPFFADSTLPLHYPQFDKIKDSDFAPAFDAGMAEQLKEVEKIANQKAKPSFDNTIIALEKSG ATLDRATTVFFNLVGADTNDARKKLQADYSAKFAAHRDAISLNGKLFARIQTLYDQRATLGLDAQGVRLVEKYYSDFVRD GAKLSDVDKTTLKAMNAELANLGTTFSQNVLAEVNAAAVVVDDVRQLDGLSQEQIAAAAEAAKARKLDGKYVIALLNTTG QPPLTQLKNRELRKRIYDASVSRGSHGGQYDNTALVSRIMKLRADKAKLLGFPTYAAYSLENQTAKTPEAVNAMLGKLAP AAVANAKREAADLQAMIDKEQKAARKPTFKLEAWDWAYYSEKVRQAKYNFDESQLKPYFELKNVLENGVFYAANQEYGLT FKQRTDLPTYRDDITVYDVFDADGKQLAIFIADMYARESKRGGAWMNSYVSQSELTGFKPVVANHLNIPKPPAGQPTLLT WDEVTTMFHEFGHALHGMFSDVKYPYFSGTSVPRDFVEFPSQVNEMWADEPSILKNYAKHYQNGTPMPQALLDKVIAASK FNQGFATTEYLGAAMLDQNWHQVSASQVPDAAGVMAFEAKALQQDGIAYAPVPPRYKTPYFSHIMGGYAAGYYAYIWSEV LDANTQQWFKQHGGLSRANGDRFRKTLLSRGGSVDAMELFQNFAGHAPQIEPLLEKRGLSAQGGDGATPESPQSKP
Sequences:
>Translated_716_residues MPSYSIAAPAATQAATQANPFFADSTLPLHYPQFDKIKDSDFAPAFDAGMAEQLKEVEKIANQKAKPSFDNTIIALEKSG ATLDRATTVFFNLVGADTNDARKKLQADYSAKFAAHRDAISLNGKLFARIQTLYDQRATLGLDAQGVRLVEKYYSDFVRD GAKLSDVDKTTLKAMNAELANLGTTFSQNVLAEVNAAAVVVDDVRQLDGLSQEQIAAAAEAAKARKLDGKYVIALLNTTG QPPLTQLKNRELRKRIYDASVSRGSHGGQYDNTALVSRIMKLRADKAKLLGFPTYAAYSLENQTAKTPEAVNAMLGKLAP AAVANAKREAADLQAMIDKEQKAARKPTFKLEAWDWAYYSEKVRQAKYNFDESQLKPYFELKNVLENGVFYAANQEYGLT FKQRTDLPTYRDDITVYDVFDADGKQLAIFIADMYARESKRGGAWMNSYVSQSELTGFKPVVANHLNIPKPPAGQPTLLT WDEVTTMFHEFGHALHGMFSDVKYPYFSGTSVPRDFVEFPSQVNEMWADEPSILKNYAKHYQNGTPMPQALLDKVIAASK FNQGFATTEYLGAAMLDQNWHQVSASQVPDAAGVMAFEAKALQQDGIAYAPVPPRYKTPYFSHIMGGYAAGYYAYIWSEV LDANTQQWFKQHGGLSRANGDRFRKTLLSRGGSVDAMELFQNFAGHAPQIEPLLEKRGLSAQGGDGATPESPQSKP >Mature_715_residues PSYSIAAPAATQAATQANPFFADSTLPLHYPQFDKIKDSDFAPAFDAGMAEQLKEVEKIANQKAKPSFDNTIIALEKSGA TLDRATTVFFNLVGADTNDARKKLQADYSAKFAAHRDAISLNGKLFARIQTLYDQRATLGLDAQGVRLVEKYYSDFVRDG AKLSDVDKTTLKAMNAELANLGTTFSQNVLAEVNAAAVVVDDVRQLDGLSQEQIAAAAEAAKARKLDGKYVIALLNTTGQ PPLTQLKNRELRKRIYDASVSRGSHGGQYDNTALVSRIMKLRADKAKLLGFPTYAAYSLENQTAKTPEAVNAMLGKLAPA AVANAKREAADLQAMIDKEQKAARKPTFKLEAWDWAYYSEKVRQAKYNFDESQLKPYFELKNVLENGVFYAANQEYGLTF KQRTDLPTYRDDITVYDVFDADGKQLAIFIADMYARESKRGGAWMNSYVSQSELTGFKPVVANHLNIPKPPAGQPTLLTW DEVTTMFHEFGHALHGMFSDVKYPYFSGTSVPRDFVEFPSQVNEMWADEPSILKNYAKHYQNGTPMPQALLDKVIAASKF NQGFATTEYLGAAMLDQNWHQVSASQVPDAAGVMAFEAKALQQDGIAYAPVPPRYKTPYFSHIMGGYAAGYYAYIWSEVL DANTQQWFKQHGGLSRANGDRFRKTLLSRGGSVDAMELFQNFAGHAPQIEPLLEKRGLSAQGGDGATPESPQSKP
Specific function: Removes dipeptides from the C-termini of N-blocked tripeptides, tetrapeptides and larger peptides [H]
COG id: COG0339
COG function: function code E; Zn-dependent oligopeptidases
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M3 family [H]
Homologues:
Organism=Homo sapiens, GI4507491, Length=593, Percent_Identity=29.1736930860034, Blast_Score=241, Evalue=2e-63, Organism=Homo sapiens, GI14149738, Length=593, Percent_Identity=30.5227655986509, Blast_Score=233, Evalue=7e-61, Organism=Homo sapiens, GI156105687, Length=602, Percent_Identity=24.4186046511628, Blast_Score=158, Evalue=2e-38, Organism=Escherichia coli, GI1787819, Length=686, Percent_Identity=46.5014577259475, Blast_Score=642, Evalue=0.0, Organism=Escherichia coli, GI1789913, Length=682, Percent_Identity=32.8445747800587, Blast_Score=335, Evalue=7e-93, Organism=Caenorhabditis elegans, GI32565901, Length=553, Percent_Identity=19.5298372513562, Blast_Score=65, Evalue=8e-11, Organism=Saccharomyces cerevisiae, GI6319793, Length=593, Percent_Identity=26.1382799325464, Blast_Score=175, Evalue=2e-44, Organism=Saccharomyces cerevisiae, GI6322715, Length=503, Percent_Identity=25.6461232604374, Blast_Score=110, Evalue=1e-24, Organism=Drosophila melanogaster, GI20129717, Length=412, Percent_Identity=27.4271844660194, Blast_Score=152, Evalue=6e-37, Organism=Drosophila melanogaster, GI21356111, Length=588, Percent_Identity=23.8095238095238, Blast_Score=152, Evalue=9e-37,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001567 [H]
Pfam domain/function: PF01432 Peptidase_M3 [H]
EC number: =3.4.15.5 [H]
Molecular weight: Translated: 79016; Mature: 78884
Theoretical pI: Translated: 7.19; Mature: 7.19
Prosite motif: PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPSYSIAAPAATQAATQANPFFADSTLPLHYPQFDKIKDSDFAPAFDAGMAEQLKEVEKI CCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH ANQKAKPSFDNTIIALEKSGATLDRATTVFFNLVGADTNDARKKLQADYSAKFAAHRDAI HCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHCCCE SLNGKLFARIQTLYDQRATLGLDAQGVRLVEKYYSDFVRDGAKLSDVDKTTLKAMNAELA ECCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH NLGTTFSQNVLAEVNAAAVVVDDVRQLDGLSQEQIAAAAEAAKARKLDGKYVIALLNTTG HHCCHHHHHHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCC QPPLTQLKNRELRKRIYDASVSRGSHGGQYDNTALVSRIMKLRADKAKLLGFPTYAAYSL CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCHHHHCCCCCHHEEEC ENQTAKTPEAVNAMLGKLAPAAVANAKREAADLQAMIDKEQKAARKPTFKLEAWDWAYYS CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHH EKVRQAKYNFDESQLKPYFELKNVLENGVFYAANQEYGLTFKQRTDLPTYRDDITVYDVF HHHHHHHCCCCHHHCCHHHHHHHHHHCCEEEEECCCCCCEECCCCCCCCCCCCEEEEEEE DADGKQLAIFIADMYARESKRGGAWMNSYVSQSELTGFKPVVANHLNIPKPPAGQPTLLT CCCCCEEEEEHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCEEE WDEVTTMFHEFGHALHGMFSDVKYPYFSGTSVPRDFVEFPSQVNEMWADEPSILKNYAKH HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHH YQNGTPMPQALLDKVIAASKFNQGFATTEYLGAAMLDQNWHQVSASQVPDAAGVMAFEAK HCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHH ALQQDGIAYAPVPPRYKTPYFSHIMGGYAAGYYAYIWSEVLDANTQQWFKQHGGLSRANG HHHHCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCH DRFRKTLLSRGGSVDAMELFQNFAGHAPQIEPLLEKRGLSAQGGDGATPESPQSKP HHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure PSYSIAAPAATQAATQANPFFADSTLPLHYPQFDKIKDSDFAPAFDAGMAEQLKEVEKI CCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH ANQKAKPSFDNTIIALEKSGATLDRATTVFFNLVGADTNDARKKLQADYSAKFAAHRDAI HCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHCCCE SLNGKLFARIQTLYDQRATLGLDAQGVRLVEKYYSDFVRDGAKLSDVDKTTLKAMNAELA ECCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH NLGTTFSQNVLAEVNAAAVVVDDVRQLDGLSQEQIAAAAEAAKARKLDGKYVIALLNTTG HHCCHHHHHHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCC QPPLTQLKNRELRKRIYDASVSRGSHGGQYDNTALVSRIMKLRADKAKLLGFPTYAAYSL CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCHHHHCCCCCHHEEEC ENQTAKTPEAVNAMLGKLAPAAVANAKREAADLQAMIDKEQKAARKPTFKLEAWDWAYYS CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHH EKVRQAKYNFDESQLKPYFELKNVLENGVFYAANQEYGLTFKQRTDLPTYRDDITVYDVF HHHHHHHCCCCHHHCCHHHHHHHHHHCCEEEEECCCCCCEECCCCCCCCCCCCEEEEEEE DADGKQLAIFIADMYARESKRGGAWMNSYVSQSELTGFKPVVANHLNIPKPPAGQPTLLT CCCCCEEEEEHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCEEE WDEVTTMFHEFGHALHGMFSDVKYPYFSGTSVPRDFVEFPSQVNEMWADEPSILKNYAKH HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHH YQNGTPMPQALLDKVIAASKFNQGFATTEYLGAAMLDQNWHQVSASQVPDAAGVMAFEAK HCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHH ALQQDGIAYAPVPPRYKTPYFSHIMGGYAAGYYAYIWSEVLDANTQQWFKQHGGLSRANG HHHHCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCH DRFRKTLLSRGGSVDAMELFQNFAGHAPQIEPLLEKRGLSAQGGDGATPESPQSKP HHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8226676; 9097039; 9278503 [H]