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The map label for this gene is yeaM [H]

Identifier: 78047054

GI number: 78047054

Start: 1689154

End: 1690005

Strand: Reverse

Name: yeaM [H]

Synonym: XCV1498

Alternate gene names: 78047054

Gene position: 1690005-1689154 (Counterclockwise)

Preceding gene: 78047061

Following gene: 78047053

Centisome position: 32.64

GC content: 71.13

Gene sequence:

>852_bases
ATGAGTATCGAAAACCCGCCAACCCAGATCGATGCCCTGCCGCCAGGCGTACGCGCCAGCTTTGAAAGGGCCGATGGGCC
GGTGCTGATCGCGTTCCTGGCGGAGCTGCGCGAGGTGTGGGCGCCGGAAACTGCCTGGCACGCGCATGTCCGCGGCCAGC
TGATGTATGTGGAGCATGGCGTGCTCACCGTACATACAGAACAGGGTGCCCTGTCGCTGCCGCCGGGCTGCGCCGGCTGG
ATGCCACCCGGGCAGCAGCACACCGTGGAGCTGGCCGGGCCGATGCGCGGGTGGGGCGTGATTGTGCGGCCGGATGCCTG
CGCCGCCCTGCCTGCGCAAGGCGGGGTGATCCGGCTGACCGGGCTGGCCCGCGAGGCCATCATGCGGGCCGCCGACTGGC
CACTGGATCAGCCGCTGGATGCCGCCCAGCAACGCCTGGCCGCGGTGCTGCTGGACGAGCTATGCCAGGTGCAGATCGAC
CACCTGCACCTGCCGATGCCGGCCGACCGCCGGCTGCTGCGGATCACCCGCCAGTTGCTCGATACGCCCGCCGACCCGCG
CCCGCTCGACGCCTGGGCCGACTGGGGCGGATTGTCGCCGCGCAGCCTGAGCCGGCATTTTCGCGAGGAGACCGGCCTGA
GTTTTGCGCAGTGGCGGCAGCAGGCGCGGCTGACCGAAGGCCTGCGGCGGCTGAGCCGGGGCCACGCGGTGGCGCAGGTG
GCCGACCAGCTTGGCTACAGCAGCCCCAGCGCCTTCGTCAGCGTGTTCCATCGCCATTTCGGCGCCCCGCCCACCCGTTA
TCTGGCCGGCCCTCATGCGCGCGGCTTGGCATCCCCCGCCGCATCCGGATAA

Upstream 100 bases:

>100_bases
ATATATTTGTCAACGCAATTATCCCGCAAGGGATTAAACCGCCCGCAAGGATCGCCACCTTACGCGGCGCGTGCGCCGGC
TCGGTAATACAATTCGGCCA

Downstream 100 bases:

>100_bases
TCGGCGCTCTTCGAGCCCGCGCCCCGGCGCGGGTTCCTCTTCACGCAGGACCTGGCTTTACATGACCGATCTGACCCGCC
CCACCTTCCACGGCTTTGAA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 282

Protein sequence:

>283_residues
MSIENPPTQIDALPPGVRASFERADGPVLIAFLAELREVWAPETAWHAHVRGQLMYVEHGVLTVHTEQGALSLPPGCAGW
MPPGQQHTVELAGPMRGWGVIVRPDACAALPAQGGVIRLTGLAREAIMRAADWPLDQPLDAAQQRLAAVLLDELCQVQID
HLHLPMPADRRLLRITRQLLDTPADPRPLDAWADWGGLSPRSLSRHFREETGLSFAQWRQQARLTEGLRRLSRGHAVAQV
ADQLGYSSPSAFVSVFHRHFGAPPTRYLAGPHARGLASPAASG

Sequences:

>Translated_283_residues
MSIENPPTQIDALPPGVRASFERADGPVLIAFLAELREVWAPETAWHAHVRGQLMYVEHGVLTVHTEQGALSLPPGCAGW
MPPGQQHTVELAGPMRGWGVIVRPDACAALPAQGGVIRLTGLAREAIMRAADWPLDQPLDAAQQRLAAVLLDELCQVQID
HLHLPMPADRRLLRITRQLLDTPADPRPLDAWADWGGLSPRSLSRHFREETGLSFAQWRQQARLTEGLRRLSRGHAVAQV
ADQLGYSSPSAFVSVFHRHFGAPPTRYLAGPHARGLASPAASG
>Mature_282_residues
SIENPPTQIDALPPGVRASFERADGPVLIAFLAELREVWAPETAWHAHVRGQLMYVEHGVLTVHTEQGALSLPPGCAGWM
PPGQQHTVELAGPMRGWGVIVRPDACAALPAQGGVIRLTGLAREAIMRAADWPLDQPLDAAQQRLAAVLLDELCQVQIDH
LHLPMPADRRLLRITRQLLDTPADPRPLDAWADWGGLSPRSLSRHFREETGLSFAQWRQQARLTEGLRRLSRGHAVAQVA
DQLGYSSPSAFVSVFHRHFGAPPTRYLAGPHARGLASPAASG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=223, Percent_Identity=33.6322869955157, Blast_Score=123, Evalue=2e-29,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 30849; Mature: 30717

Theoretical pI: Translated: 7.42; Mature: 7.42

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIENPPTQIDALPPGVRASFERADGPVLIAFLAELREVWAPETAWHAHVRGQLMYVEHG
CCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCEEEEEECC
VLTVHTEQGALSLPPGCAGWMPPGQQHTVELAGPMRGWGVIVRPDACAALPAQGGVIRLT
EEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEECCCCCCCCCCCCCEEEEH
GLAREAIMRAADWPLDQPLDAAQQRLAAVLLDELCQVQIDHLHLPMPADRRLLRITRQLL
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHH
DTPADPRPLDAWADWGGLSPRSLSRHFREETGLSFAQWRQQARLTEGLRRLSRGHAVAQV
CCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ADQLGYSSPSAFVSVFHRHFGAPPTRYLAGPHARGLASPAASG
HHHHCCCCHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SIENPPTQIDALPPGVRASFERADGPVLIAFLAELREVWAPETAWHAHVRGQLMYVEHG
CCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCEEEEEECC
VLTVHTEQGALSLPPGCAGWMPPGQQHTVELAGPMRGWGVIVRPDACAALPAQGGVIRLT
EEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEECCCCCCCCCCCCCEEEEH
GLAREAIMRAADWPLDQPLDAAQQRLAAVLLDELCQVQIDHLHLPMPADRRLLRITRQLL
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHH
DTPADPRPLDAWADWGGLSPRSLSRHFREETGLSFAQWRQQARLTEGLRRLSRGHAVAQV
CCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ADQLGYSSPSAFVSVFHRHFGAPPTRYLAGPHARGLASPAASG
HHHHCCCCHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]