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The map label for this gene is yfmS [H]

Identifier: 78044371

GI number: 78044371

Start: 923535

End: 924353

Strand: Direct

Name: yfmS [H]

Synonym: CHY_1045

Alternate gene names: 78044371

Gene position: 923535-924353 (Clockwise)

Preceding gene: 78043992

Following gene: 78043785

Centisome position: 38.46

GC content: 44.32

Gene sequence:

>819_bases
ATGAGGCTGTTGGACGCTTATTTAAAAGTGGCAGAAAATCTAAAAGAGCTTTTAGGGGATGAAGTATTGCTGGCAATTTC
CGATAAGGAAAATTTTATCTGGTATAAACCAGCGGCGGACATTGATTTAAATATTTATCCGGGGATGCCGATACCTCCGG
ACTCGATTGCACGACAGGTTTTAGACTCCAAAAGGCGAATAGAAACGTATGTTACGCAGGAAAAAAGTGCCTTTGGTAAA
CCCTATATATGTAAAGCAATGCCCATTATCGAAGATGGGGAAATTCAGGGGGTCATCGTTCTGGACACCAGCACCGAAAA
GCGGGATTTAGTCCAAAGGGCGATTGGGGAATTAGAAAGCAGTATCAAAGAAATTAACAAGGCTGCGGAAGAATTATCCA
GCTCTGCCACCAATTTTTCCGGCGAATTTGCAGCCCTTGCCCAACGGGCTGGGGTGATCAGTAACGATGCTAACGAAATC
CGGCAGCTGGTGGATTTAATTAATAGCATTGCCGATAAAACCCATATCCTCGGGTTAAATGCGGCCATTGAAGCCGCCCG
GGTGGGTAACCAGGGTAAAGGGTTTGCGGTGGTGGCTGAAGAAATTAGAAAGCTTGCCCAGCAATCCAAGTTTGCGGTCA
AAGATATTGCCGGAAAAATTGAAAAAATTTTAGGAGAAATCCTCGCCCTGGCTCAATCAATTGAAGAATTTTCCGGGCTG
AGCGAAGAGCAAACGGCAATTTCGGAAGAACTGCACTCTACTTTAAGCAATTTAGAACAAATGGCAAGGGAGCTTTCAAG
ATTAGCCGAGAAATTTTAA

Upstream 100 bases:

>100_bases
CTACTTAATTATTTTCTACTGTTTTTTTACTCTATTATTGTTGAAAAACCAGCAAAAATATGCGAATATTATAGAAAAAA
CCAAAAACAGGAGGGTAAAG

Downstream 100 bases:

>100_bases
CGCTTTCATTAAGGCATAAGCTTTATCCAGGGTTTCCAAATATTCTGCGGTGGGGTCTGAGTCCACCGTAATACCTCCGC
CTACGCCAAAGTAGGCTTTT

Product: putative methyl-accepting chemotaxis protein

Products: NA

Alternate protein names: Methyl-accepting chemotaxis protein [H]

Number of amino acids: Translated: 272; Mature: 272

Protein sequence:

>272_residues
MRLLDAYLKVAENLKELLGDEVLLAISDKENFIWYKPAADIDLNIYPGMPIPPDSIARQVLDSKRRIETYVTQEKSAFGK
PYICKAMPIIEDGEIQGVIVLDTSTEKRDLVQRAIGELESSIKEINKAAEELSSSATNFSGEFAALAQRAGVISNDANEI
RQLVDLINSIADKTHILGLNAAIEAARVGNQGKGFAVVAEEIRKLAQQSKFAVKDIAGKIEKILGEILALAQSIEEFSGL
SEEQTAISEELHSTLSNLEQMARELSRLAEKF

Sequences:

>Translated_272_residues
MRLLDAYLKVAENLKELLGDEVLLAISDKENFIWYKPAADIDLNIYPGMPIPPDSIARQVLDSKRRIETYVTQEKSAFGK
PYICKAMPIIEDGEIQGVIVLDTSTEKRDLVQRAIGELESSIKEINKAAEELSSSATNFSGEFAALAQRAGVISNDANEI
RQLVDLINSIADKTHILGLNAAIEAARVGNQGKGFAVVAEEIRKLAQQSKFAVKDIAGKIEKILGEILALAQSIEEFSGL
SEEQTAISEELHSTLSNLEQMARELSRLAEKF
>Mature_272_residues
MRLLDAYLKVAENLKELLGDEVLLAISDKENFIWYKPAADIDLNIYPGMPIPPDSIARQVLDSKRRIETYVTQEKSAFGK
PYICKAMPIIEDGEIQGVIVLDTSTEKRDLVQRAIGELESSIKEINKAAEELSSSATNFSGEFAALAQRAGVISNDANEI
RQLVDLINSIADKTHILGLNAAIEAARVGNQGKGFAVVAEEIRKLAQQSKFAVKDIAGKIEKILGEILALAQSIEEFSGL
SEEQTAISEELHSTLSNLEQMARELSRLAEKF

Specific function: Chemotactic-signal transducers respond to changes in the concentration of attractants and repellents in the environment, transduce a signal from the outside to the inside of the cell, and facilitate sensory adaptation through the variation of the level of

COG id: COG0840

COG function: function code NT; Methyl-accepting chemotaxis protein

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 methyl-accepting transducer domain [H]

Homologues:

Organism=Escherichia coli, GI1787690, Length=95, Percent_Identity=46.3157894736842, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1789453, Length=187, Percent_Identity=33.6898395721925, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI2367378, Length=75, Percent_Identity=49.3333333333333, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788194, Length=75, Percent_Identity=48, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788195, Length=75, Percent_Identity=46.6666666666667, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004089 [H]

Pfam domain/function: PF00015 MCPsignal [H]

EC number: NA

Molecular weight: Translated: 29873; Mature: 29873

Theoretical pI: Translated: 4.52; Mature: 4.52

Prosite motif: PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLLDAYLKVAENLKELLGDEVLLAISDKENFIWYKPAADIDLNIYPGMPIPPDSIARQV
CHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEECCCCCCEEEECCCCCCCHHHHHHHH
LDSKRRIETYVTQEKSAFGKPYICKAMPIIEDGEIQGVIVLDTSTEKRDLVQRAIGELES
HHHHHHHHHHHHHHHHHCCCCCEECCCCCEECCCCCEEEEEECCCHHHHHHHHHHHHHHH
SIKEINKAAEELSSSATNFSGEFAALAQRAGVISNDANEIRQLVDLINSIADKTHILGLN
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHEEEHH
AAIEAARVGNQGKGFAVVAEEIRKLAQQSKFAVKDIAGKIEKILGEILALAQSIEEFSGL
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
SEEQTAISEELHSTLSNLEQMARELSRLAEKF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRLLDAYLKVAENLKELLGDEVLLAISDKENFIWYKPAADIDLNIYPGMPIPPDSIARQV
CHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEECCCCCCEEEECCCCCCCHHHHHHHH
LDSKRRIETYVTQEKSAFGKPYICKAMPIIEDGEIQGVIVLDTSTEKRDLVQRAIGELES
HHHHHHHHHHHHHHHHHCCCCCEECCCCCEECCCCCEEEEEECCCHHHHHHHHHHHHHHH
SIKEINKAAEELSSSATNFSGEFAALAQRAGVISNDANEIRQLVDLINSIADKTHILGLN
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHEEEHH
AAIEAARVGNQGKGFAVVAEEIRKLAQQSKFAVKDIAGKIEKILGEILALAQSIEEFSGL
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
SEEQTAISEELHSTLSNLEQMARELSRLAEKF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9141694; 9384377 [H]