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The map label for this gene is kdgT

Identifier: 78043980

GI number: 78043980

Start: 1120250

End: 1121212

Strand: Direct

Name: kdgT

Synonym: CHY_1257

Alternate gene names: 78043980

Gene position: 1120250-1121212 (Clockwise)

Preceding gene: 78044495

Following gene: 78042917

Centisome position: 46.65

GC content: 39.98

Gene sequence:

>963_bases
ATGAAAATTAAAGCAACTTTAGAACGTGTACCTGGTGGTATGATGGTCATTCCCCTTTTTTTGGGTACATTAATTAATAC
ACTTTTTCCAAATGCAGCAAACACATTTGGATCCTTTACAGGAGCTTTACTAACCGGCGCTTTACCAATTTTAGCAGTAT
TTTTTGTATGCATGGGAGCAACCATAGATTTTAAAGCGACACCTTACATTTTAAAAAAAGGTGGAGCTTTATGGATTACA
AAAATATTAATTGGAGTTATCGTAGGAGTTATAGGTGCCAAATTTCTTGGAGAAGGAATGATAAAAAGTGGTCCGTTTGT
CGGACTTTCTGTTTTAGCTCTTGTAGCATCGATGAATGATACAAATGGTGGCTTATATATGGCCTTAATGGGACAATTTG
GCAAAAAAGAAGACGTAGCAGCTTATTCTGTTATGAGCTTAGAATCTGGGCCGTTTTTTACAATGGTGACATTAGGAGTG
GCAGGACTTTCAGCATTTCCATGGCAAATGCTTGTTGGAGCAATACTTCCTCTTATAATTGGTATGATTTTGGGTAATTT
AGATAAAGAACTGAGGGAATTTTTCGGTAGAGCAGTACCAGTATTAATACCGTTTTTTGCTTTTGGGCTTGGAGCCAAAA
TGAATTTGCTTGATGTATGGAAGGCTGGACTTGTAGGTATCTTGGTGGGCGTTGCTGTAGTAGTTATTACTGGAACGGCA
TTATTTATTGCTGATCGGTTAACCGGTGGTAACGGAATAGCCGGGTTAGCGGCTGCATCTACTGCAGGAAATGCTGCAGC
AGTACCAGCTGTAGTTGCATCAGCAAACCATGCCTATGCTCCAGTTGCACCAGCGGCTACAGCAATAGTAGCATCGTCAG
TTATTGTCACTGCATTTTTGGTTCCAATTATAACCGCTTGGTGGGCAAAACGTATCGGAGTTGTAAATAACAATGCCGCA
TAA

Upstream 100 bases:

>100_bases
AAATTTCGTAAATTTTTAATTTTGGTCTAATTATAATTTATGTAAATTTTTTAGAATAATCTAATTTATTTAAACTAAAA
TTTTGCAAGGAGGGAGCCAA

Downstream 100 bases:

>100_bases
AATTTTGAATATAAAAGCATTATATCTGAATCTTACATTAGGATAAATGTTATAGGGGTCAAGGGTAAGCAAGTTTCAAA
ATGTGTGGTTCCTTGACCCC

Product: 2-keto-3-deoxygluconate permease

Products: Proton [Cytoplasm]; 2-dehydro-3-deoxy-D-gluconate [Cytoplasm] [C]

Alternate protein names: KDG permease

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MKIKATLERVPGGMMVIPLFLGTLINTLFPNAANTFGSFTGALLTGALPILAVFFVCMGATIDFKATPYILKKGGALWIT
KILIGVIVGVIGAKFLGEGMIKSGPFVGLSVLALVASMNDTNGGLYMALMGQFGKKEDVAAYSVMSLESGPFFTMVTLGV
AGLSAFPWQMLVGAILPLIIGMILGNLDKELREFFGRAVPVLIPFFAFGLGAKMNLLDVWKAGLVGILVGVAVVVITGTA
LFIADRLTGGNGIAGLAAASTAGNAAAVPAVVASANHAYAPVAPAATAIVASSVIVTAFLVPIITAWWAKRIGVVNNNAA

Sequences:

>Translated_320_residues
MKIKATLERVPGGMMVIPLFLGTLINTLFPNAANTFGSFTGALLTGALPILAVFFVCMGATIDFKATPYILKKGGALWIT
KILIGVIVGVIGAKFLGEGMIKSGPFVGLSVLALVASMNDTNGGLYMALMGQFGKKEDVAAYSVMSLESGPFFTMVTLGV
AGLSAFPWQMLVGAILPLIIGMILGNLDKELREFFGRAVPVLIPFFAFGLGAKMNLLDVWKAGLVGILVGVAVVVITGTA
LFIADRLTGGNGIAGLAAASTAGNAAAVPAVVASANHAYAPVAPAATAIVASSVIVTAFLVPIITAWWAKRIGVVNNNAA
>Mature_320_residues
MKIKATLERVPGGMMVIPLFLGTLINTLFPNAANTFGSFTGALLTGALPILAVFFVCMGATIDFKATPYILKKGGALWIT
KILIGVIVGVIGAKFLGEGMIKSGPFVGLSVLALVASMNDTNGGLYMALMGQFGKKEDVAAYSVMSLESGPFFTMVTLGV
AGLSAFPWQMLVGAILPLIIGMILGNLDKELREFFGRAVPVLIPFFAFGLGAKMNLLDVWKAGLVGILVGVAVVVITGTA
LFIADRLTGGNGIAGLAAASTAGNAAAVPAVVASANHAYAPVAPAATAIVASSVIVTAFLVPIITAWWAKRIGVVNNNAA

Specific function: The 2-keto-3-deoxygluconate permease transports the degraded pectin products into the bacterial cell, where they serve as carbon and energy sources. This is a hydrogen coupled transport system

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the kdgT transporter family

Homologues:

Organism=Escherichia coli, GI87082349, Length=313, Percent_Identity=52.0766773162939, Blast_Score=298, Evalue=3e-82,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): KDGT_CARHZ (Q3ACP3)

Other databases:

- EMBL:   CP000141
- RefSeq:   YP_360091.1
- STRING:   Q3ACP3
- GeneID:   3726215
- GenomeReviews:   CP000141_GR
- KEGG:   chy:CHY_1257
- NMPDR:   fig|246194.3.peg.1297
- TIGR:   CHY_1257
- eggNOG:   NOG04034
- HOGENOM:   HBG322377
- OMA:   SIMSLES
- ProtClustDB:   PRK05274
- BioCyc:   CHYD246194:CHY_1257-MONOMER
- HAMAP:   MF_00070
- InterPro:   IPR004684
- ProDom:   PD024513

Pfam domain/function: PF03812 KdgT

EC number: NA

Molecular weight: Translated: 32831; Mature: 32831

Theoretical pI: Translated: 10.20; Mature: 10.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x1131be44)-; HASH(0x124235a8)-; HASH(0x1252ab60)-; HASH(0xb8425b8)-; HASH(0x1252b498)-; HASH(0x124232fc)-; HASH(0xfa416c4)-; HASH(0x124ce17c)-; HASH(0x124ce248)-; HASH(0x12148810)-;

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIKATLERVPGGMMVIPLFLGTLINTLFPNAANTFGSFTGALLTGALPILAVFFVCMGA
CCCHHHHHHCCCCEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
TIDFKATPYILKKGGALWITKILIGVIVGVIGAKFLGEGMIKSGPFVGLSVLALVASMND
CCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCC
TNGGLYMALMGQFGKKEDVAAYSVMSLESGPFFTMVTLGVAGLSAFPWQMLVGAILPLII
CCCCEEEEEHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
GMILGNLDKELREFFGRAVPVLIPFFAFGLGAKMNLLDVWKAGLVGILVGVAVVVITGTA
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LFIADRLTGGNGIAGLAAASTAGNAAAVPAVVASANHAYAPVAPAATAIVASSVIVTAFL
HHHHHHCCCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH
VPIITAWWAKRIGVVNNNAA
HHHHHHHHHHHCCCCCCCCH
>Mature Secondary Structure
MKIKATLERVPGGMMVIPLFLGTLINTLFPNAANTFGSFTGALLTGALPILAVFFVCMGA
CCCHHHHHHCCCCEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
TIDFKATPYILKKGGALWITKILIGVIVGVIGAKFLGEGMIKSGPFVGLSVLALVASMND
CCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCC
TNGGLYMALMGQFGKKEDVAAYSVMSLESGPFFTMVTLGVAGLSAFPWQMLVGAILPLII
CCCCEEEEEHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
GMILGNLDKELREFFGRAVPVLIPFFAFGLGAKMNLLDVWKAGLVGILVGVAVVVITGTA
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LFIADRLTGGNGIAGLAAASTAGNAAAVPAVVASANHAYAPVAPAATAIVASSVIVTAFL
HHHHHHCCCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH
VPIITAWWAKRIGVVNNNAA
HHHHHHHHHHHCCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Proton [Periplasm]; 2-dehydro-3-deoxy-D-gluconate [Periplasm] [C]

Specific reaction: Proton [Periplasm] + 2-dehydro-3-deoxy-D-gluconate [Periplasm] = Proton [Cytoplasm] + 2-dehydro-3-deoxy-D-gluconate [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA