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The map label for this gene is 78043478

Identifier: 78043478

GI number: 78043478

Start: 939274

End: 940185

Strand: Direct

Name: 78043478

Synonym: CHY_1061

Alternate gene names: NA

Gene position: 939274-940185 (Clockwise)

Preceding gene: 78043940

Following gene: 78044928

Centisome position: 39.11

GC content: 41.56

Gene sequence:

>912_bases
ATGTCAAAACAAAAAAAAAGGCGGGGTCTTTACCGGTGGCTTTTAATAACCATCTTTGTTCTTTTGTTTTTAAATTACCT
GCAAAAAATTAAGATAACTGACTTTTTACCGGTGGTTACCGAAAGTTCAAAACCCCTTACTCCTTTTTTGGTTATTGAAG
CTTACTACCAGGAAAAATTAGCAAAACCTTGCGGAGTTTTTATTCGGGATGCCAAAATTTATGTTACCGATGGGGCACGA
AAAAAGGTTTATGTTTTTGAAACCGATGGCACTCCGGTAGCATGTTTTGGGCAAAAGGGGGAATTTACCTATCCCTGGAG
TGTATATGTAGATTCTGAGGGGAAAATCTATGTTTCCGATTTAATGGATGGGGTTATCAAGGAAATTGACCCTGAGAGTG
GTATAATACGGGAGCTGGGGGCTGAGTTTTTAAAAAGTCCAATGGGTATCTGGATTGAAGGGGATAAAATGTTTGTAGCC
GATGCTAACCAAAGAAGCGTTATCCTTATGGATAAAGAGGGTAGGTACCTAAAAACCCTCACAAAAAATGGTGATCTGGT
TTCGCCTTCGTATTTACAGGTAGTGGGGGATGAACTTTTTGTTACCGATGCGGCGGCCAATCGCGTAGTTAACGGAAAAA
TGGAAGAAAGTTTTACCAGAGTTTTTGGGGATGGCTATTTACTCTGTCCCCGGGGAATTGCGGTTTTTGCGGATACGATT
GTGGTGGCGAACACCCTTTTAAATCGTATCGATGCCTTTTCGGCAACCGGGAAGTATCTTTGGAGTTTTGGAGAAAAGGG
GCATGAACTAAATCAGATGTTTTTACCTACGGGGATTGCTTATGCGGAAGAGCTTTTAGCGGTAGCCGATCAGGGAAACG
GGCGGGTAGTGGTTTATAATATTGAGAAATAA

Upstream 100 bases:

>100_bases
TTTTCGAGGAAATGTTGCGGTTTATGCCCCCGCTATTTTGGCAAAAATTTCAGGTATGTTATGGTAAGATAAATCCGAAA
AAAAACTGCGGGGGTATCTT

Downstream 100 bases:

>100_bases
TTTACCGTTTCGGGATTCTCAGGTTTACACCCCCCTCCAGTCCGGGAAAACTTTGGCTGGAGGGGTTTTTATTTATGTCA
AAAAGAATCTTTCTTACGTT

Product: NHL repeat-containing protein

Products: NA

Alternate protein names: NHL Repeat-Containing Protein; PA14 Domain-Containing Protein; Tetratricopeptide Repeat-Containing Protein; NHL Repeat Protein; PKD Domain Containing Protein

Number of amino acids: Translated: 303; Mature: 302

Protein sequence:

>303_residues
MSKQKKRRGLYRWLLITIFVLLFLNYLQKIKITDFLPVVTESSKPLTPFLVIEAYYQEKLAKPCGVFIRDAKIYVTDGAR
KKVYVFETDGTPVACFGQKGEFTYPWSVYVDSEGKIYVSDLMDGVIKEIDPESGIIRELGAEFLKSPMGIWIEGDKMFVA
DANQRSVILMDKEGRYLKTLTKNGDLVSPSYLQVVGDELFVTDAAANRVVNGKMEESFTRVFGDGYLLCPRGIAVFADTI
VVANTLLNRIDAFSATGKYLWSFGEKGHELNQMFLPTGIAYAEELLAVADQGNGRVVVYNIEK

Sequences:

>Translated_303_residues
MSKQKKRRGLYRWLLITIFVLLFLNYLQKIKITDFLPVVTESSKPLTPFLVIEAYYQEKLAKPCGVFIRDAKIYVTDGAR
KKVYVFETDGTPVACFGQKGEFTYPWSVYVDSEGKIYVSDLMDGVIKEIDPESGIIRELGAEFLKSPMGIWIEGDKMFVA
DANQRSVILMDKEGRYLKTLTKNGDLVSPSYLQVVGDELFVTDAAANRVVNGKMEESFTRVFGDGYLLCPRGIAVFADTI
VVANTLLNRIDAFSATGKYLWSFGEKGHELNQMFLPTGIAYAEELLAVADQGNGRVVVYNIEK
>Mature_302_residues
SKQKKRRGLYRWLLITIFVLLFLNYLQKIKITDFLPVVTESSKPLTPFLVIEAYYQEKLAKPCGVFIRDAKIYVTDGARK
KVYVFETDGTPVACFGQKGEFTYPWSVYVDSEGKIYVSDLMDGVIKEIDPESGIIRELGAEFLKSPMGIWIEGDKMFVAD
ANQRSVILMDKEGRYLKTLTKNGDLVSPSYLQVVGDELFVTDAAANRVVNGKMEESFTRVFGDGYLLCPRGIAVFADTIV
VANTLLNRIDAFSATGKYLWSFGEKGHELNQMFLPTGIAYAEELLAVADQGNGRVVVYNIEK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI84993742, Length=252, Percent_Identity=27.3809523809524, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI32454739, Length=248, Percent_Identity=29.8387096774194, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI32454737, Length=248, Percent_Identity=29.8387096774194, Blast_Score=68, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17553622, Length=237, Percent_Identity=28.2700421940928, Blast_Score=65, Evalue=6e-11,
Organism=Drosophila melanogaster, GI221330419, Length=255, Percent_Identity=27.4509803921569, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24655386, Length=255, Percent_Identity=27.4509803921569, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI22024206, Length=255, Percent_Identity=27.4509803921569, Blast_Score=70, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34049; Mature: 33918

Theoretical pI: Translated: 5.54; Mature: 5.54

Prosite motif: PS51125 NHL L=RR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKQKKRRGLYRWLLITIFVLLFLNYLQKIKITDFLPVVTESSKPLTPFLVIEAYYQEKL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCEEEEECCCCCCCCEEEHHHHHHHHH
AKPCGVFIRDAKIYVTDGARKKVYVFETDGTPVACFGQKGEFTYPWSVYVDSEGKIYVSD
CCCCCEEEECCEEEEECCCCEEEEEEECCCCEEEEECCCCCEECCEEEEECCCCCEEHHH
LMDGVIKEIDPESGIIRELGAEFLKSPMGIWIEGDKMFVADANQRSVILMDKEGRYLKTL
HHHHHHHHCCCCCCHHHHHHHHHHCCCCCEEEECCEEEEEECCCCEEEEECCCCCEEEEE
TKNGDLVSPSYLQVVGDELFVTDAAANRVVNGKMEESFTRVFGDGYLLCPRGIAVFADTI
ECCCCCCCCHHHHHHCCEEEEECHHHHHHCCCHHHHHHHHHHCCCEEECCCCHHHHHHHH
VVANTLLNRIDAFSATGKYLWSFGEKGHELNQMFLPTGIAYAEELLAVADQGNGRVVVYN
HHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHEECCCHHHHHHHHHHHHCCCCCEEEEEE
IEK
ECC
>Mature Secondary Structure 
SKQKKRRGLYRWLLITIFVLLFLNYLQKIKITDFLPVVTESSKPLTPFLVIEAYYQEKL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCEEEEECCCCCCCCEEEHHHHHHHHH
AKPCGVFIRDAKIYVTDGARKKVYVFETDGTPVACFGQKGEFTYPWSVYVDSEGKIYVSD
CCCCCEEEECCEEEEECCCCEEEEEEECCCCEEEEECCCCCEECCEEEEECCCCCEEHHH
LMDGVIKEIDPESGIIRELGAEFLKSPMGIWIEGDKMFVADANQRSVILMDKEGRYLKTL
HHHHHHHHCCCCCCHHHHHHHHHHCCCCCEEEECCEEEEEECCCCEEEEECCCCCEEEEE
TKNGDLVSPSYLQVVGDELFVTDAAANRVVNGKMEESFTRVFGDGYLLCPRGIAVFADTI
ECCCCCCCCHHHHHHCCEEEEECHHHHHHCCCHHHHHHHHHHCCCEEECCCCHHHHHHHH
VVANTLLNRIDAFSATGKYLWSFGEKGHELNQMFLPTGIAYAEELLAVADQGNGRVVVYN
HHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHEECCCHHHHHHHHHHHHCCCCCEEEEEE
IEK
ECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA