Click here to switch to the map view.

The map label for this gene is dnaD [H]

Identifier: 78043275

GI number: 78043275

Start: 1101597

End: 1102334

Strand: Direct

Name: dnaD [H]

Synonym: CHY_1235

Alternate gene names: 78043275

Gene position: 1101597-1102334 (Clockwise)

Preceding gene: 78043027

Following gene: 78044663

Centisome position: 45.87

GC content: 31.3

Gene sequence:

>738_bases
ATGAGCGGATTAACTTTGTTTTTAGCTGAGCTATTTAATCAAGGGTTGCTAAGTGTTCCCGTTTTTTTATTAAAAAATTA
CCGGCATCTAAATTTAACGGAAAAAGAATTGGTATTTTTACTTCAACTGATGAGTTTTAATAATGAAGGAAACTTATTAC
CTTCGGCTGAGTTTTTAGCCAAAAGCTTAGGAGAGGATTTAGGAGAAATTAAAAAGAATTATCGCGAGTTAATTAAAAAA
GGCATTATTTCTGTGAGCAAGAAATTTGATGAAAAATCTGGAAAATATGTAGAAACAATTGATTACACTCCGCTTTTCGA
AAAATTAACCGATCTATGGGCTGCCCAAAAAGTCTTAAATGAAGTAAACAATAGGCCTTTAGAAAAAGGTAGCGTAGATT
CTGCGGCAAGAGTGGTAGAGGTTTTTAGCCGGGAATTTGGAAGAGGACTGTCTCCTATTGAAATTGAACTTATTGATAAC
TGGTTAAATCAAAAAAAATACTCAGAAGAATTAATCTATGAGGCCTTAAAAAGGGCAGTAATTTTAAATAAAAAAAGTTT
TCGGTATATTGATGCTATTCTTTACCGCTGGGAAAGTAATAATATTAAAACTATTGAAGAAGTTAATAACTTTGAAGAGC
AAATGAAGAAAAAGAAGACTGCTAAAGCCAGTAAAAATGAAAATAATGACATGGACGAGAAAAAGAAGGAGCTAATTAAA
AAACTTTATTTAAGTTAG

Upstream 100 bases:

>100_bases
TTGGTTATGAAAGCCAAAAAGCGTTAGAAATTCTTAAAAAATATAATTTAAAGCCGGTTTCGTTGGCAAGAGGTAAATGG
GTAATTTGGGAGGACTTCTG

Downstream 100 bases:

>100_bases
GTGATTTAAATGACAAAATGTTTAATTTGCCAGGATCGTGGGCTAATTTTAAATGAAAAGGGAGAATATGAAAAATGCCA
ATGCCTTAGCAAAAAAGATT

Product: DNA replication protein DnaD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 244

Protein sequence:

>245_residues
MSGLTLFLAELFNQGLLSVPVFLLKNYRHLNLTEKELVFLLQLMSFNNEGNLLPSAEFLAKSLGEDLGEIKKNYRELIKK
GIISVSKKFDEKSGKYVETIDYTPLFEKLTDLWAAQKVLNEVNNRPLEKGSVDSAARVVEVFSREFGRGLSPIEIELIDN
WLNQKKYSEELIYEALKRAVILNKKSFRYIDAILYRWESNNIKTIEEVNNFEEQMKKKKTAKASKNENNDMDEKKKELIK
KLYLS

Sequences:

>Translated_245_residues
MSGLTLFLAELFNQGLLSVPVFLLKNYRHLNLTEKELVFLLQLMSFNNEGNLLPSAEFLAKSLGEDLGEIKKNYRELIKK
GIISVSKKFDEKSGKYVETIDYTPLFEKLTDLWAAQKVLNEVNNRPLEKGSVDSAARVVEVFSREFGRGLSPIEIELIDN
WLNQKKYSEELIYEALKRAVILNKKSFRYIDAILYRWESNNIKTIEEVNNFEEQMKKKKTAKASKNENNDMDEKKKELIK
KLYLS
>Mature_244_residues
SGLTLFLAELFNQGLLSVPVFLLKNYRHLNLTEKELVFLLQLMSFNNEGNLLPSAEFLAKSLGEDLGEIKKNYRELIKKG
IISVSKKFDEKSGKYVETIDYTPLFEKLTDLWAAQKVLNEVNNRPLEKGSVDSAARVVEVFSREFGRGLSPIEIELIDNW
LNQKKYSEELIYEALKRAVILNKKSFRYIDAILYRWESNNIKTIEEVNNFEEQMKKKKTAKASKNENNDMDEKKKELIKK
LYLS

Specific function: Probable component of primosome involved in the initiation of DNA replication [H]

COG id: COG3935

COG function: function code L; Putative primosome component and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006343 [H]

Pfam domain/function: PF07261 DnaB_2 [H]

EC number: NA

Molecular weight: Translated: 28470; Mature: 28339

Theoretical pI: Translated: 9.30; Mature: 9.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGLTLFLAELFNQGLLSVPVFLLKNYRHLNLTEKELVFLLQLMSFNNEGNLLPSAEFLA
CCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHH
KSLGEDLGEIKKNYRELIKKGIISVSKKFDEKSGKYVETIDYTPLFEKLTDLWAAQKVLN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHH
EVNNRPLEKGSVDSAARVVEVFSREFGRGLSPIEIELIDNWLNQKKYSEELIYEALKRAV
HHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILNKKSFRYIDAILYRWESNNIKTIEEVNNFEEQMKKKKTAKASKNENNDMDEKKKELIK
HHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
KLYLS
HHHCC
>Mature Secondary Structure 
SGLTLFLAELFNQGLLSVPVFLLKNYRHLNLTEKELVFLLQLMSFNNEGNLLPSAEFLA
CHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHH
KSLGEDLGEIKKNYRELIKKGIISVSKKFDEKSGKYVETIDYTPLFEKLTDLWAAQKVLN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHH
EVNNRPLEKGSVDSAARVVEVFSREFGRGLSPIEIELIDNWLNQKKYSEELIYEALKRAV
HHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILNKKSFRYIDAILYRWESNNIKTIEEVNNFEEQMKKKKTAKASKNENNDMDEKKKELIK
HHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
KLYLS
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7704260; 8760912; 9384377 [H]