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The map label for this gene is ydhD [C]

Identifier: 77761114

GI number: 77761114

Start: 951295

End: 952221

Strand: Reverse

Name: ydhD [C]

Synonym: XC_0796

Alternate gene names: 77761114

Gene position: 952221-951295 (Counterclockwise)

Preceding gene: 66767131

Following gene: 66767128

Centisome position: 18.49

GC content: 67.42

Gene sequence:

>927_bases
ATGTCCCTCGATCCCGCCCTGCGTTCCCGCATCGATACGCTGCTGCAATCCAACCGCGTGGTCCTCTTCATGAAAGGCCA
GCCCGGCATGCCGCAGTGCGGCTTCTCGGCCAAGGCCATCGGCGTGCTGGACGGCCTGGGCATCGACTATGCCCACGTCA
ACGTGCTGGCCGACCAGGAAATCCGCGAAGGCATCAAGGCCTACGGCGACTGGCCGACCATTCCGCAGCTGTATGTGGAT
GGCGAGCTGATCGGCGGCAGCGACATCATCGTGCAGATGGCCGACAGCGGCGAGCTGAGCAGCATGCTCGGCCTGCAGGC
ACCGGACCGCAGCCCGCCCAAGATCACCATCACCCCGGCTGCGGTCGAGATGCTCAAGGGTGCGTTGGCCGATGCACCGG
ATGCCTCGCTGACGCTGGCCATCGATGCCAATTTCCAGCCGAACTTCCAGCTGGCGCCAACCAACCCGAACGCTATCGCC
GCCGAGTCCAACGGGCTGCGCGTGCAGTTCGACCTGGCCAGCGCGCGCCGCGCCGACGGCATCACCATCGACTGGGTGGA
CGACATCCGTGGCCGCGGCCTGGCCATCGACAACCCCAACGCGCCCAAGCCGGTGCAGGAGCTGGCGGTGCGCGATGCCG
ACGACCGTCTCAAGGCCGGTACGCTGACTGTGGTGGACGTGCGCCCGGCCGATGAGCGTGCGCTGGCTACGGTGGCAGCG
CCGTTCCGCACCCTGGACGCACACGAGCGCCTGGAGATCGAGCAACTGCCCAAGGACACCCCGCTGGCGTTCCTGTGCCA
CCGCGGCGGGCGTAGCCTGCAGGCGGCCGAGCATTTCCGCGGCCTGGGCTTTACCAACGTCTACAACGTCACCGGCGGCA
TCGATGCCTGGTCGGACGCGGTGGACAACGGCGTGCCCAAGTACTGA

Upstream 100 bases:

>100_bases
GGCGCGAGGGGATGCGATACAGCGTTTCCAGCGTGGTCATGCCTCATGATGCCACGGGGCGTAGAATGGTCGGCCTCCAC
GATCTGACCGAAGTGCTGCC

Downstream 100 bases:

>100_bases
GCACGCCGGGTGGCCACGCACGGCCGCCGTAACACCCAAACGGGCGCTCCCATGGAGCGTCCGTTTTTTCATGCCTCCCA
TCACAAGGACACCGATGCGC

Product: glutaredoxin-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 307

Protein sequence:

>308_residues
MSLDPALRSRIDTLLQSNRVVLFMKGQPGMPQCGFSAKAIGVLDGLGIDYAHVNVLADQEIREGIKAYGDWPTIPQLYVD
GELIGGSDIIVQMADSGELSSMLGLQAPDRSPPKITITPAAVEMLKGALADAPDASLTLAIDANFQPNFQLAPTNPNAIA
AESNGLRVQFDLASARRADGITIDWVDDIRGRGLAIDNPNAPKPVQELAVRDADDRLKAGTLTVVDVRPADERALATVAA
PFRTLDAHERLEIEQLPKDTPLAFLCHRGGRSLQAAEHFRGLGFTNVYNVTGGIDAWSDAVDNGVPKY

Sequences:

>Translated_308_residues
MSLDPALRSRIDTLLQSNRVVLFMKGQPGMPQCGFSAKAIGVLDGLGIDYAHVNVLADQEIREGIKAYGDWPTIPQLYVD
GELIGGSDIIVQMADSGELSSMLGLQAPDRSPPKITITPAAVEMLKGALADAPDASLTLAIDANFQPNFQLAPTNPNAIA
AESNGLRVQFDLASARRADGITIDWVDDIRGRGLAIDNPNAPKPVQELAVRDADDRLKAGTLTVVDVRPADERALATVAA
PFRTLDAHERLEIEQLPKDTPLAFLCHRGGRSLQAAEHFRGLGFTNVYNVTGGIDAWSDAVDNGVPKY
>Mature_307_residues
SLDPALRSRIDTLLQSNRVVLFMKGQPGMPQCGFSAKAIGVLDGLGIDYAHVNVLADQEIREGIKAYGDWPTIPQLYVDG
ELIGGSDIIVQMADSGELSSMLGLQAPDRSPPKITITPAAVEMLKGALADAPDASLTLAIDANFQPNFQLAPTNPNAIAA
ESNGLRVQFDLASARRADGITIDWVDDIRGRGLAIDNPNAPKPVQELAVRDADDRLKAGTLTVVDVRPADERALATVAAP
FRTLDAHERLEIEQLPKDTPLAFLCHRGGRSLQAAEHFRGLGFTNVYNVTGGIDAWSDAVDNGVPKY

Specific function: Unknown

COG id: COG0607

COG function: function code P; Rhodanese-related sulfurtransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 glutaredoxin domain [H]

Homologues:

Organism=Homo sapiens, GI95113651, Length=99, Percent_Identity=44.4444444444444, Blast_Score=107, Evalue=1e-23,
Organism=Homo sapiens, GI42516576, Length=96, Percent_Identity=48.9583333333333, Blast_Score=105, Evalue=5e-23,
Organism=Escherichia coli, GI1787943, Length=95, Percent_Identity=43.1578947368421, Blast_Score=101, Evalue=6e-23,
Organism=Caenorhabditis elegans, GI17556042, Length=97, Percent_Identity=48.4536082474227, Blast_Score=107, Evalue=7e-24,
Organism=Caenorhabditis elegans, GI71988159, Length=152, Percent_Identity=34.2105263157895, Blast_Score=99, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI71988153, Length=152, Percent_Identity=34.2105263157895, Blast_Score=98, Evalue=5e-21,
Organism=Saccharomyces cerevisiae, GI6325198, Length=106, Percent_Identity=52.8301886792453, Blast_Score=117, Evalue=2e-27,
Organism=Saccharomyces cerevisiae, GI6321022, Length=84, Percent_Identity=44.047619047619, Blast_Score=92, Evalue=9e-20,
Organism=Saccharomyces cerevisiae, GI6320303, Length=84, Percent_Identity=40.4761904761905, Blast_Score=89, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24642023, Length=92, Percent_Identity=44.5652173913043, Blast_Score=105, Evalue=4e-23,
Organism=Drosophila melanogaster, GI19921242, Length=97, Percent_Identity=44.3298969072165, Blast_Score=101, Evalue=8e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002109
- InterPro:   IPR014434
- InterPro:   IPR004480
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF00462 Glutaredoxin [H]

EC number: NA

Molecular weight: Translated: 32986; Mature: 32854

Theoretical pI: Translated: 4.52; Mature: 4.52

Prosite motif: PS50206 RHODANESE_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLDPALRSRIDTLLQSNRVVLFMKGQPGMPQCGFSAKAIGVLDGLGIDYAHVNVLADQE
CCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEHECCCCCCEEEEEEEECHH
IREGIKAYGDWPTIPQLYVDGELIGGSDIIVQMADSGELSSMLGLQAPDRSPPKITITPA
HHHHHHHCCCCCCCCEEEECCEEECCCEEEEEEECCCCHHHHHCCCCCCCCCCEEEECHH
AVEMLKGALADAPDASLTLAIDANFQPNFQLAPTNPNAIAAESNGLRVQFDLASARRADG
HHHHHHHHHCCCCCCEEEEEEECCCCCCEEECCCCCCEEEECCCCCEEEEECCCCCCCCC
ITIDWVDDIRGRGLAIDNPNAPKPVQELAVRDADDRLKAGTLTVVDVRPADERALATVAA
CEEEEHHCCCCCEEEECCCCCCCHHHHHHHCCCCCCCCCCEEEEEEECCCCCHHHHHHHH
PFRTLDAHERLEIEQLPKDTPLAFLCHRGGRSLQAAEHFRGLGFTNVYNVTGGIDAWSDA
HHHHCCCHHCCCHHHCCCCCCEEEEEECCCCCCHHHHHHCCCCCCEEEECCCCCCHHHHH
VDNGVPKY
HCCCCCCC
>Mature Secondary Structure 
SLDPALRSRIDTLLQSNRVVLFMKGQPGMPQCGFSAKAIGVLDGLGIDYAHVNVLADQE
CCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEHECCCCCCEEEEEEEECHH
IREGIKAYGDWPTIPQLYVDGELIGGSDIIVQMADSGELSSMLGLQAPDRSPPKITITPA
HHHHHHHCCCCCCCCEEEECCEEECCCEEEEEEECCCCHHHHHCCCCCCCCCCEEEECHH
AVEMLKGALADAPDASLTLAIDANFQPNFQLAPTNPNAIAAESNGLRVQFDLASARRADG
HHHHHHHHHCCCCCCEEEEEEECCCCCCEEECCCCCCEEEECCCCCEEEEECCCCCCCCC
ITIDWVDDIRGRGLAIDNPNAPKPVQELAVRDADDRLKAGTLTVVDVRPADERALATVAA
CEEEEHHCCCCCEEEECCCCCCCHHHHHHHCCCCCCCCCCEEEEEEECCCCCHHHHHHHH
PFRTLDAHERLEIEQLPKDTPLAFLCHRGGRSLQAAEHFRGLGFTNVYNVTGGIDAWSDA
HHHHCCCHHCCCHHHCCCCCCEEEEEECCCCCCHHHHHHCCCCCCEEEECCCCCCHHHHH
VDNGVPKY
HCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]