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The map label for this gene is yibD [C]

Identifier: 77748697

GI number: 77748697

Start: 3655217

End: 3657244

Strand: Direct

Name: yibD [C]

Synonym: XAC3110

Alternate gene names: 77748697

Gene position: 3655217-3657244 (Clockwise)

Preceding gene: 21243831

Following gene: 21243841

Centisome position: 70.62

GC content: 66.81

Gene sequence:

>2028_bases
ATGCGCACGCGCGGCTGGCGCGCCACCTGGCAACGCATTCGCGTGCACACGCAGGCGCCCCCGGTCGCCGTGGGCACGCC
GCTGTGGCTGCCGCAGGCCGCCCCGTTCGCGGCGTTCGCGCTGCCGCACAGCCCTACCCCGCGGGTGACGGTGGTGATTC
CGGTCTACAACCACATTGCGCACACCTTGGCCTGCCTGCGCGCGCTGGCGGCGCATCCGCCGCTGCTGAGTGTGGAAATC
ATCGTCGTGGACGACGGCAGCAGCGACGCCACCGCTGAACAGTTGCCGCAGATCGCCGGTCTGCACTATCACCTGCGTGC
GAGCAACGGCGGCTTCATCGCGGCCTGCAACGACGGCATCGCACTGGCCCGCGGCGATTTCGTGGTGCTGCTCAACAACG
ACACCATTCCGCAGCCCGGCTGGCTGGACCGGTTGATCGACACCTTTGCCCAGCATCCGGGCGCCGGCCTGGTCGGCGCG
CAACTGGTGTATCCGGACGGGCGCCTGCAGGAATCCGGCGGCGTGGTCTTCGGCGATGGCAGCGCCTGGAGCTACGGCCG
CTTTGAATCGTCCGAAGACCCACGTTATGCATATGTACGCGCGATGGACTACTGCTCGGGCGCGGCAATCGCGCTACCGC
GCGCGCTGTTGCACACGCTGGGCGGGCTGGACCGGCGCTACATGCCGGCGTATTACGAAGACACCGATCTGGCGTTTGCA
GTTCGCGCGGCCGGATATCAGGTGCTGGTGCAGCCGGCCAGCGTTGTGGTGCATGACGAGGGCACCAGCAATGGCACCGA
CACGCGTACCGGGGTGAAGGCCTACCAGGTACGCAATCAGAGCGTCTTCGCCGAAAAATGGCAGCAGCCGCTGAAAACGC
AGCTGCCGGCAGGTACGGTGCCCGGGCCGGCACTGCTGCACCGCCACCAGCGACAGGTCTTGATCCTGGACGAGTGCGTG
CCGCAGCCGGACCGCGACTCAGGCTCGCTGCGGCAGTTCAACCTGATCCGACTGCTGCGCGAAGAAGGCGCGCATGTCGT
CTTCGTGCCGACGCGCCGCGAACACGCCGGGCGCCACACCCAGGCATTGCAGCAGCTCGGTGTCGAAGTCTGGTACGCGC
CGTTTCTCGAAGGCATCGGCAGCTGGCTGCGCAGCCATGGTGCGCGATTTGCGGTGGTGCTGCTGGTGCGCCACCACGTG
GCGCATGCCTGCCTGCCGTTGCTCAGGCAATATGCGCGCCAGGCGCGCACCTTGTTCGATACCGTCGACCTGCATTACCT
GCGCGAACGCCGCGGTGCCGAGCTGGCCGGCGATGCCAATCTGCTGCGTAGCGCAGAACGCACCCGCGTGCGCGAGCTCG
AGATCATGGCGGCCACCGATGTCACCTTGCTGGTGTCTGCCGCAGAACAGGCGCAGTTGCGCGCGGATGCGCCACACATC
CGCACCGCCCTGCTGTCCAACCTGCATGAGGTCGCCGGCAGCGGCCACAGCTTCGCGCAGCGCCGCGACCTGGTCTTCGT
CGGCGGCTTTCGTCATCCGCCGAATGTGGATGCGGTACAGTGGTTCATCAGTGACATCTTTCCGCAGGTCCGTGCGCAGC
TGCCCGAGGTGGTCTTCCACTGCATCGGTGCCGACCTGCCCGACGCCCTGCGATTGTTGGCCGACGAATGCCCCGGCGTG
CAGCTGCATGGTCACGTTCCGGATCTGGTTCCGTTCATGGACAGCGCACGTATCGCGGTGGCGCCGCTGCGTTTTGGCGC
GGGCGTGAAAGGCAAGATCAATCTCAGCATGGCGCACGGCCAGCCGGTGGTCGGCACCACCTGCGCGGTGGAAGGCATGC
ACCTGCGCGATGGCGAGGATGTGTGCGTCGCCGACGATGCGGACGCCTTCGCCGCTGCAATCGTGCGGCTGTATCGAGAT
GCGACGTTGTGGCAGCGCTTGGCCGATAACGGCTTGCGCAACGTGGCCGAGCATTTTTCGCTGGACGCAGCACGGGCGAC
GGTACGCGAGTTGTTTATTGCGGGGTGA

Upstream 100 bases:

>100_bases
CCCACCACGCTGGAGTTCCAACGCAATGTCGATGTCTTTGGCCGATGCGCGCTATCTGTTCAATCGCGTCCTCGGCCTGA
TCCACCGCAGCGTGGCCAGC

Downstream 100 bases:

>100_bases
GCAGGCGGCTAGGGATTGGCGCCTGGATCGTTTGCATCACGAAACGCCCCAGGACACGCAGTGATTGGCGATTGATCCGC
CTTCGCCGCATCGCGAGGCT

Product: glycosyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 675; Mature: 675

Protein sequence:

>675_residues
MRTRGWRATWQRIRVHTQAPPVAVGTPLWLPQAAPFAAFALPHSPTPRVTVVIPVYNHIAHTLACLRALAAHPPLLSVEI
IVVDDGSSDATAEQLPQIAGLHYHLRASNGGFIAACNDGIALARGDFVVLLNNDTIPQPGWLDRLIDTFAQHPGAGLVGA
QLVYPDGRLQESGGVVFGDGSAWSYGRFESSEDPRYAYVRAMDYCSGAAIALPRALLHTLGGLDRRYMPAYYEDTDLAFA
VRAAGYQVLVQPASVVVHDEGTSNGTDTRTGVKAYQVRNQSVFAEKWQQPLKTQLPAGTVPGPALLHRHQRQVLILDECV
PQPDRDSGSLRQFNLIRLLREEGAHVVFVPTRREHAGRHTQALQQLGVEVWYAPFLEGIGSWLRSHGARFAVVLLVRHHV
AHACLPLLRQYARQARTLFDTVDLHYLRERRGAELAGDANLLRSAERTRVRELEIMAATDVTLLVSAAEQAQLRADAPHI
RTALLSNLHEVAGSGHSFAQRRDLVFVGGFRHPPNVDAVQWFISDIFPQVRAQLPEVVFHCIGADLPDALRLLADECPGV
QLHGHVPDLVPFMDSARIAVAPLRFGAGVKGKINLSMAHGQPVVGTTCAVEGMHLRDGEDVCVADDADAFAAAIVRLYRD
ATLWQRLADNGLRNVAEHFSLDAARATVRELFIAG

Sequences:

>Translated_675_residues
MRTRGWRATWQRIRVHTQAPPVAVGTPLWLPQAAPFAAFALPHSPTPRVTVVIPVYNHIAHTLACLRALAAHPPLLSVEI
IVVDDGSSDATAEQLPQIAGLHYHLRASNGGFIAACNDGIALARGDFVVLLNNDTIPQPGWLDRLIDTFAQHPGAGLVGA
QLVYPDGRLQESGGVVFGDGSAWSYGRFESSEDPRYAYVRAMDYCSGAAIALPRALLHTLGGLDRRYMPAYYEDTDLAFA
VRAAGYQVLVQPASVVVHDEGTSNGTDTRTGVKAYQVRNQSVFAEKWQQPLKTQLPAGTVPGPALLHRHQRQVLILDECV
PQPDRDSGSLRQFNLIRLLREEGAHVVFVPTRREHAGRHTQALQQLGVEVWYAPFLEGIGSWLRSHGARFAVVLLVRHHV
AHACLPLLRQYARQARTLFDTVDLHYLRERRGAELAGDANLLRSAERTRVRELEIMAATDVTLLVSAAEQAQLRADAPHI
RTALLSNLHEVAGSGHSFAQRRDLVFVGGFRHPPNVDAVQWFISDIFPQVRAQLPEVVFHCIGADLPDALRLLADECPGV
QLHGHVPDLVPFMDSARIAVAPLRFGAGVKGKINLSMAHGQPVVGTTCAVEGMHLRDGEDVCVADDADAFAAAIVRLYRD
ATLWQRLADNGLRNVAEHFSLDAARATVRELFIAG
>Mature_675_residues
MRTRGWRATWQRIRVHTQAPPVAVGTPLWLPQAAPFAAFALPHSPTPRVTVVIPVYNHIAHTLACLRALAAHPPLLSVEI
IVVDDGSSDATAEQLPQIAGLHYHLRASNGGFIAACNDGIALARGDFVVLLNNDTIPQPGWLDRLIDTFAQHPGAGLVGA
QLVYPDGRLQESGGVVFGDGSAWSYGRFESSEDPRYAYVRAMDYCSGAAIALPRALLHTLGGLDRRYMPAYYEDTDLAFA
VRAAGYQVLVQPASVVVHDEGTSNGTDTRTGVKAYQVRNQSVFAEKWQQPLKTQLPAGTVPGPALLHRHQRQVLILDECV
PQPDRDSGSLRQFNLIRLLREEGAHVVFVPTRREHAGRHTQALQQLGVEVWYAPFLEGIGSWLRSHGARFAVVLLVRHHV
AHACLPLLRQYARQARTLFDTVDLHYLRERRGAELAGDANLLRSAERTRVRELEIMAATDVTLLVSAAEQAQLRADAPHI
RTALLSNLHEVAGSGHSFAQRRDLVFVGGFRHPPNVDAVQWFISDIFPQVRAQLPEVVFHCIGADLPDALRLLADECPGV
QLHGHVPDLVPFMDSARIAVAPLRFGAGVKGKINLSMAHGQPVVGTTCAVEGMHLRDGEDVCVADDADAFAAAIVRLYRD
ATLWQRLADNGLRNVAEHFSLDAARATVRELFIAG

Specific function: Unknown

COG id: COG0438

COG function: function code M; Glycosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 73887; Mature: 73887

Theoretical pI: Translated: 7.16; Mature: 7.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTRGWRATWQRIRVHTQAPPVAVGTPLWLPQAAPFAAFALPHSPTPRVTVVIPVYNHIA
CCCCCHHHHHHHHEEECCCCCEEECCCCCCCCCCCCEEEECCCCCCCCEEEEEECHHHHH
HTLACLRALAAHPPLLSVEIIVVDDGSSDATAEQLPQIAGLHYHLRASNGGFIAACNDGI
HHHHHHHHHHCCCCCEEEEEEEEECCCCCCHHHHHHHHHCCEEEEEECCCCEEEEECCCE
ALARGDFVVLLNNDTIPQPGWLDRLIDTFAQHPGAGLVGAQLVYPDGRLQESGGVVFGDG
EEECCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEECCCCCEECCCCEEEECC
SAWSYGRFESSEDPRYAYVRAMDYCSGAAIALPRALLHTLGGLDRRYMPAYYEDTDLAFA
CCCCCCCCCCCCCCCEEEEEHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCEECCCCCEEE
VRAAGYQVLVQPASVVVHDEGTSNGTDTRTGVKAYQVRNQSVFAEKWQQPLKTQLPAGTV
EECCCEEEEEECCEEEEECCCCCCCCCCCCCCHHEEECCCHHHHHHHHHHHHHCCCCCCC
PGPALLHRHQRQVLILDECVPQPDRDSGSLRQFNLIRLLREEGAHVVFVPTRREHAGRHT
CCHHHHHHCCCCEEEEHHCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCHHHCCHHH
QALQQLGVEVWYAPFLEGIGSWLRSHGARFAVVLLVRHHVAHACLPLLRQYARQARTLFD
HHHHHHCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TVDLHYLRERRGAELAGDANLLRSAERTRVRELEIMAATDVTLLVSAAEQAQLRADAPHI
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHEEEEEECCHHHEEHHHHHHHHHCCCHHH
RTALLSNLHEVAGSGHSFAQRRDLVFVGGFRHPPNVDAVQWFISDIFPQVRAQLPEVVFH
HHHHHHHHHHHHCCCCCHHHHCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
CIGADLPDALRLLADECPGVQLHGHVPDLVPFMDSARIAVAPLRFGAGVKGKINLSMAHG
HHCCCCHHHHHHHHHHCCCEEEECCCCHHHHHCCCCCEEEEEEEECCCCCEEEEEEEECC
QPVVGTTCAVEGMHLRDGEDVCVADDADAFAAAIVRLYRDATLWQRLADNGLRNVAEHFS
CCCEEEEEEECCEEECCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
LDAARATVRELFIAG
CHHHHHHHHHHHCCC
>Mature Secondary Structure
MRTRGWRATWQRIRVHTQAPPVAVGTPLWLPQAAPFAAFALPHSPTPRVTVVIPVYNHIA
CCCCCHHHHHHHHEEECCCCCEEECCCCCCCCCCCCEEEECCCCCCCCEEEEEECHHHHH
HTLACLRALAAHPPLLSVEIIVVDDGSSDATAEQLPQIAGLHYHLRASNGGFIAACNDGI
HHHHHHHHHHCCCCCEEEEEEEEECCCCCCHHHHHHHHHCCEEEEEECCCCEEEEECCCE
ALARGDFVVLLNNDTIPQPGWLDRLIDTFAQHPGAGLVGAQLVYPDGRLQESGGVVFGDG
EEECCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEECCCCCEECCCCEEEECC
SAWSYGRFESSEDPRYAYVRAMDYCSGAAIALPRALLHTLGGLDRRYMPAYYEDTDLAFA
CCCCCCCCCCCCCCCEEEEEHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCEECCCCCEEE
VRAAGYQVLVQPASVVVHDEGTSNGTDTRTGVKAYQVRNQSVFAEKWQQPLKTQLPAGTV
EECCCEEEEEECCEEEEECCCCCCCCCCCCCCHHEEECCCHHHHHHHHHHHHHCCCCCCC
PGPALLHRHQRQVLILDECVPQPDRDSGSLRQFNLIRLLREEGAHVVFVPTRREHAGRHT
CCHHHHHHCCCCEEEEHHCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCHHHCCHHH
QALQQLGVEVWYAPFLEGIGSWLRSHGARFAVVLLVRHHVAHACLPLLRQYARQARTLFD
HHHHHHCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TVDLHYLRERRGAELAGDANLLRSAERTRVRELEIMAATDVTLLVSAAEQAQLRADAPHI
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHEEEEEECCHHHEEHHHHHHHHHCCCHHH
RTALLSNLHEVAGSGHSFAQRRDLVFVGGFRHPPNVDAVQWFISDIFPQVRAQLPEVVFH
HHHHHHHHHHHHCCCCCHHHHCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
CIGADLPDALRLLADECPGVQLHGHVPDLVPFMDSARIAVAPLRFGAGVKGKINLSMAHG
HHCCCCHHHHHHHHHHCCCEEEECCCCHHHHHCCCCCEEEEEEEECCCCCEEEEEEEECC
QPVVGTTCAVEGMHLRDGEDVCVADDADAFAAAIVRLYRDATLWQRLADNGLRNVAEHFS
CCCEEEEEEECCEEECCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
LDAARATVRELFIAG
CHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]