Definition | Xylella fastidiosa Temecula1, complete genome. |
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Accession | NC_004556 |
Length | 2,519,802 |
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The map label for this gene is 77747688
Identifier: 77747688
GI number: 77747688
Start: 1556728
End: 1557186
Strand: Reverse
Name: 77747688
Synonym: PD1329
Alternate gene names: NA
Gene position: 1557186-1556728 (Counterclockwise)
Preceding gene: 28199214
Following gene: 28199212
Centisome position: 61.8
GC content: 52.07
Gene sequence:
>459_bases ATGCCCATGTCTTTGCGTTTTGTGATCGCCACTCTTTTCTCTCTCGTTTTGGTTGGTTGTGCCAGCACTTCTAAAGTAAT GTTAAGCTCAGCGCGTACACCGATTGATCCAGCGTTAGTACGCATTTACTCGAATGCTCCTGCCAATGCTATAGAGATCG CACAGCTTGAATCGATCAGCGGTTCTGGATTTGGCAGTCAAGCTCAAACGGATGCTGCGATAGCCCAACTCAAGCGTGAG GCAGCCAAACTTGGTGCTAATGGCGTGGTCTTGGTGGGTGTCGGCTCACAGCGTTCCGGTGGCGGCGTGTCGATCGGTGC TGGAAGCTTTGCTGGAAGTATCGCCAGTGGTTTGAGTGTTGGTATTCCTACCATGCGAAAGCAAGCGGCAGGTATCGCGA TTTTCGTACCCTCTGATAGTGGGTCTTCTAGGGAGCCACAGAAGAGTCCAGCTCGCTGA
Upstream 100 bases:
>100_bases TAATAATGAGTGATGGCAATCACGTTAAGATAGTCTTTCCAGGTTCAGTGACCTACTCACATCATTTCCACTACGGCATT AGTTTTAGTTCAGGAGTTCC
Downstream 100 bases:
>100_bases CCAAGACACCATAGATGAGACTGGATTGCTCGATAATGTAATGCCTGTGCAACCACTGAAGGTGGGTCACTTGGATATGA TGTCTCCGTGTAAATAGTCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 152; Mature: 151
Protein sequence:
>152_residues MPMSLRFVIATLFSLVLVGCASTSKVMLSSARTPIDPALVRIYSNAPANAIEIAQLESISGSGFGSQAQTDAAIAQLKRE AAKLGANGVVLVGVGSQRSGGGVSIGAGSFAGSIASGLSVGIPTMRKQAAGIAIFVPSDSGSSREPQKSPAR
Sequences:
>Translated_152_residues MPMSLRFVIATLFSLVLVGCASTSKVMLSSARTPIDPALVRIYSNAPANAIEIAQLESISGSGFGSQAQTDAAIAQLKRE AAKLGANGVVLVGVGSQRSGGGVSIGAGSFAGSIASGLSVGIPTMRKQAAGIAIFVPSDSGSSREPQKSPAR >Mature_151_residues PMSLRFVIATLFSLVLVGCASTSKVMLSSARTPIDPALVRIYSNAPANAIEIAQLESISGSGFGSQAQTDAAIAQLKREA AKLGANGVVLVGVGSQRSGGGVSIGAGSFAGSIASGLSVGIPTMRKQAAGIAIFVPSDSGSSREPQKSPAR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15205; Mature: 15073
Theoretical pI: Translated: 10.95; Mature: 10.95
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPMSLRFVIATLFSLVLVGCASTSKVMLSSARTPIDPALVRIYSNAPANAIEIAQLESIS CCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHEEEECCCCCCEEEHHHHHCCC GSGFGSQAQTDAAIAQLKREAAKLGANGVVLVGVGSQRSGGGVSIGAGSFAGSIASGLSV CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEECCCHHHHHHHCCCCC GIPTMRKQAAGIAIFVPSDSGSSREPQKSPAR CCCHHHHHHCCEEEEEECCCCCCCCCCCCCCC >Mature Secondary Structure PMSLRFVIATLFSLVLVGCASTSKVMLSSARTPIDPALVRIYSNAPANAIEIAQLESIS CCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHEEEECCCCCCEEEHHHHHCCC GSGFGSQAQTDAAIAQLKREAAKLGANGVVLVGVGSQRSGGGVSIGAGSFAGSIASGLSV CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEECCCHHHHHHHCCCCC GIPTMRKQAAGIAIFVPSDSGSSREPQKSPAR CCCHHHHHHCCEEEEEECCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA