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The map label for this gene is glxA [H]

Identifier: 77465515

GI number: 77465515

Start: 593360

End: 594364

Strand: Reverse

Name: glxA [H]

Synonym: RSP_3514

Alternate gene names: 77465515

Gene position: 594364-593360 (Counterclockwise)

Preceding gene: 77465521

Following gene: 77465510

Centisome position: 63.03

GC content: 68.46

Gene sequence:

>1005_bases
ATGAAACCCGCTGCCGCACGGCGTCATGAGCTTTCCATCGCCCTGATATTGCAGGATAAGTTCACGATTGCCGCTTTCTC
CGGCTTCATCGATGCGCTGCGGCTGGCAGCCGACGATGCTGCAAAAAGCCGACAGATCCGCGTCGCCTGGAAGGTCTTCG
CCCAGCACCGCAGCCCGGTCATGGCCAGCTGCGGGCTGCGCGTGGCCACCGAGGACGGGCTGCCCGTTCCCGAGGACTAT
GACTATATCGCCATCTGCGGCGGCAATTCCTTCGCCGACGCCGCGCCCGCGCCGCAGCTGGCCCAGCTCATCCAGCGCGC
CCACCGCGCGCGGGTGGGGCTCCTCGGCATCTGCACCGGCAGTTTCGCCATCGCCCGTGCGGGGCTGATCGGCGACCGGC
GCTTCTGCATCCACTGGAACGTGGCCGAGCCCTTCAAGGCGCTCTTCCCGCGCGCCCAGATCTCGGTGGACCGGATCTTC
ATCGACGAGGGCGACGTCATCACCTGCGCGGGCTCGACCGCGGCCATCGACCTCGCGCTCTATCTCGTCATGCGCCACTG
CGGACAGGACCGGGCGCAGCAGGTGATGCGGCACATGATGCTCTCGCAGATGCGCCCCGCCACCATGCCGCAGGCCCATT
TCTATCAGCTCCCTCCGGGCGACAGCCACCCGCGCCTGCGCCGCGCGCTGCATTTCATGGAGCAGCAGCTCGACCATCCG
CCCTCGGTCGGCGCCATCGCGCGCTATTGCGGCGTCTCGGTCCGCCAGCTCGAGCGGATCTTCCTTCAGGCGCTGGGGCA
GACGCCGAACGCGGCCTTCCGCCAGATGCGGCTGAATTACGGGCGCTACCTGCTCTCGGCCGGCACGCTGCCCGTCACCG
AGATCGCCCATATCGCAGGCTTCTCCGATGCGGCCCATTTCTCGCGCGAGTTCCGCCGTGCCTTTCACGAGACGCCGAGC
GCCCACCGCCGCGCGCGCAGCCACGGTCCCGACGCGGGCTCATGA

Upstream 100 bases:

>100_bases
CTTGATTGGGAGGAAGCCTAGCAGCGATGTGACATATCCCATTGAATGCATCGGCCACATGATTGAACATTATCGACATG
CCCGACCGGAGCCTCTCGCG

Downstream 100 bases:

>100_bases
CTGTCCTCACGCTCGCGAGGGCCGCGGGCAACCGGTCCGAGGGGCCTTTGCCACCCCTTCGCCGTGGTCCGCAGAAGGCG
CGGCCGCGGCCGGTCAGCCG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 334

Protein sequence:

>334_residues
MKPAAARRHELSIALILQDKFTIAAFSGFIDALRLAADDAAKSRQIRVAWKVFAQHRSPVMASCGLRVATEDGLPVPEDY
DYIAICGGNSFADAAPAPQLAQLIQRAHRARVGLLGICTGSFAIARAGLIGDRRFCIHWNVAEPFKALFPRAQISVDRIF
IDEGDVITCAGSTAAIDLALYLVMRHCGQDRAQQVMRHMMLSQMRPATMPQAHFYQLPPGDSHPRLRRALHFMEQQLDHP
PSVGAIARYCGVSVRQLERIFLQALGQTPNAAFRQMRLNYGRYLLSAGTLPVTEIAHIAGFSDAAHFSREFRRAFHETPS
AHRRARSHGPDAGS

Sequences:

>Translated_334_residues
MKPAAARRHELSIALILQDKFTIAAFSGFIDALRLAADDAAKSRQIRVAWKVFAQHRSPVMASCGLRVATEDGLPVPEDY
DYIAICGGNSFADAAPAPQLAQLIQRAHRARVGLLGICTGSFAIARAGLIGDRRFCIHWNVAEPFKALFPRAQISVDRIF
IDEGDVITCAGSTAAIDLALYLVMRHCGQDRAQQVMRHMMLSQMRPATMPQAHFYQLPPGDSHPRLRRALHFMEQQLDHP
PSVGAIARYCGVSVRQLERIFLQALGQTPNAAFRQMRLNYGRYLLSAGTLPVTEIAHIAGFSDAAHFSREFRRAFHETPS
AHRRARSHGPDAGS
>Mature_334_residues
MKPAAARRHELSIALILQDKFTIAAFSGFIDALRLAADDAAKSRQIRVAWKVFAQHRSPVMASCGLRVATEDGLPVPEDY
DYIAICGGNSFADAAPAPQLAQLIQRAHRARVGLLGICTGSFAIARAGLIGDRRFCIHWNVAEPFKALFPRAQISVDRIF
IDEGDVITCAGSTAAIDLALYLVMRHCGQDRAQQVMRHMMLSQMRPATMPQAHFYQLPPGDSHPRLRRALHFMEQQLDHP
PSVGAIARYCGVSVRQLERIFLQALGQTPNAAFRQMRLNYGRYLLSAGTLPVTEIAHIAGFSDAAHFSREFRRAFHETPS
AHRRARSHGPDAGS

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790339, Length=106, Percent_Identity=35.8490566037736, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR002818 [H]

Pfam domain/function: PF01965 DJ-1_PfpI; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 36901; Mature: 36901

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPAAARRHELSIALILQDKFTIAAFSGFIDALRLAADDAAKSRQIRVAWKVFAQHRSPV
CCCCCCCHHCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCH
MASCGLRVATEDGLPVPEDYDYIAICGGNSFADAAPAPQLAQLIQRAHRARVGLLGICTG
HHHCCCEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECC
SFAIARAGLIGDRRFCIHWNVAEPFKALFPRAQISVDRIFIDEGDVITCAGSTAAIDLAL
HHHHHHHCCCCCCEEEEECCCCCHHHHHCCHHHEEEEEEEECCCCEEEECCCHHHHHHHH
YLVMRHCGQDRAQQVMRHMMLSQMRPATMPQAHFYQLPPGDSHPRLRRALHFMEQQLDHP
HHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCC
PSVGAIARYCGVSVRQLERIFLQALGQTPNAAFRQMRLNYGRYLLSAGTLPVTEIAHIAG
CCHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHC
FSDAAHFSREFRRAFHETPSAHRRARSHGPDAGS
CCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKPAAARRHELSIALILQDKFTIAAFSGFIDALRLAADDAAKSRQIRVAWKVFAQHRSPV
CCCCCCCHHCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCH
MASCGLRVATEDGLPVPEDYDYIAICGGNSFADAAPAPQLAQLIQRAHRARVGLLGICTG
HHHCCCEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECC
SFAIARAGLIGDRRFCIHWNVAEPFKALFPRAQISVDRIFIDEGDVITCAGSTAAIDLAL
HHHHHHHCCCCCCEEEEECCCCCHHHHHCCHHHEEEEEEEECCCCEEEECCCHHHHHHHH
YLVMRHCGQDRAQQVMRHMMLSQMRPATMPQAHFYQLPPGDSHPRLRRALHFMEQQLDHP
HHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCC
PSVGAIARYCGVSVRQLERIFLQALGQTPNAAFRQMRLNYGRYLLSAGTLPVTEIAHIAG
CCHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHC
FSDAAHFSREFRRAFHETPSAHRRARSHGPDAGS
CCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]