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The map label for this gene is ydaM [H]

Identifier: 77465369

GI number: 77465369

Start: 431269

End: 432588

Strand: Reverse

Name: ydaM [H]

Synonym: RSP_3368

Alternate gene names: 77465369

Gene position: 432588-431269 (Counterclockwise)

Preceding gene: 77465370

Following gene: 77465363

Centisome position: 45.87

GC content: 72.35

Gene sequence:

>1320_bases
ATGGACTGGGCACGGCGCATTCTCTATCGGCAATCGCTCCGCGGCTGGATGGCGCTGGCGCTGGTCCTCGCCGTCCTGCC
GCTTCTGACCAGCGCCGTGGTGGGCTACGCCGTCTATCACCGCACCATCGTCAGCCCGTTCCGCGACGTGCTGACGGTTC
AGCATGCGACGCTCGTCAGCCTCGAACGCATCCACGACGATTACTGGCAGGTGGCCGAAGCGGTGAACGGCTATCTGCTC
AGCGGCGATACCGAGCGCGCCGTCCGCTATGCCGCCGTGGCAGCCGAGGTCGAGGCGCAGTTCGAAAGGCTCTCGGAGGC
CGTGGCGGCCGATCCGGCGCTGGTCGCGCTCATCGGGGTAGCGCGGGCGGAATGGAGTGCGCTCGCGCGCGATGCTGAGA
CCGTGCTCGCCCGTCCGCGGGAGGGGCTGGCCGGGGCGGTGCCCGACATCGACCGGGTCGCGGCACTCGAACGCGAGCTG
CCGGTGGCGGCGCAGAGGCTCGAGCAGATCGTCGAGCGGCTGCGGAGCGAGAGCGAGGCGCATCACGCGGCGGCGCTGGT
GGCGCTCCGGCGGCTGGAGATCGGGGCGGCTGCGGCCCTCATCCTGTCCGTCCTGATGATGGGGCTCGGCGCCTGGGTGG
TGAACCGGGCGATCGTCCTCGGGACCGACCGGCTGGTCGAGGGCGCGCGGCGCGTGGCCTCGGGGCAGCGCGAAGAGCCG
GTGGCGGTGACGGTGCCCCCGGAGCTCGCTGCCGTGGCCAATGCCTTCAACGACATGACCCGCACCATCGTCGAGCAGGA
GGCGCGGCTGCGCGAGTTCGGGCGGAGGGACGCGCTGACCTCGCTTCTCAATCGCCGCGAGTTCGACCACGCGCTGGAGC
AGCGCGCGGCGCCCTGGACGGGCGAGCCCTATGCGCTGCTGCTGATCGACATCGACCGGTTCAAGCGGATCAACGACACC
CACGGCCATGCGGTGGGCGATGCCGTGCTGCGGGCGGTGGCCCTGCGGCTGGCCGCGTCCGCGCGCCAGGGTTTGCCCCT
CTTCCGGTACGGCGGCGAGGAATTCGCCCTGCTCCTCGACCGGGCCGGGGCGGCCGAGGCCCTGTCCGAGGCCGAGGATC
TGCGCCGCGCGGTGGCGGAGGAGCCGGTCGGGCTGGAGGACGGCACGCGGATCGCCGTCACGATCAGCGTGGGCATCGCG
CTCGGCGCCCGCGGTCAGGCCGGCGCGGAGCTGTTCGCGGCCGCCGACCGCGCACTCTATGCGGCGAAGGACGCGGGGCG
CAATTGCAGCCGGATGGATCCCTCTGTTGTGCAGGCCTGA

Upstream 100 bases:

>100_bases
TCGTGACCGCAGCGCTATGTCGGGCCTCGCGGCGGGGGGCTGGCTGGTCCGCGGTGCCGGCAGGTGGTAAGGACATCCGC
AGGTTTCCGAAGGATCGCGG

Downstream 100 bases:

>100_bases
GGGATCGAAGCAGGTCCGTTCGGTCCCCTTGGCCGAGGGGCCGTGAACGTCCATCGCGATCCCGACGTCTCTGACAGGGA
AGGGGGAATGCCGATCAGAC

Product: periplasmic sensor diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 439; Mature: 439

Protein sequence:

>439_residues
MDWARRILYRQSLRGWMALALVLAVLPLLTSAVVGYAVYHRTIVSPFRDVLTVQHATLVSLERIHDDYWQVAEAVNGYLL
SGDTERAVRYAAVAAEVEAQFERLSEAVAADPALVALIGVARAEWSALARDAETVLARPREGLAGAVPDIDRVAALEREL
PVAAQRLEQIVERLRSESEAHHAAALVALRRLEIGAAAALILSVLMMGLGAWVVNRAIVLGTDRLVEGARRVASGQREEP
VAVTVPPELAAVANAFNDMTRTIVEQEARLREFGRRDALTSLLNRREFDHALEQRAAPWTGEPYALLLIDIDRFKRINDT
HGHAVGDAVLRAVALRLAASARQGLPLFRYGGEEFALLLDRAGAAEALSEAEDLRRAVAEEPVGLEDGTRIAVTISVGIA
LGARGQAGAELFAAADRALYAAKDAGRNCSRMDPSVVQA

Sequences:

>Translated_439_residues
MDWARRILYRQSLRGWMALALVLAVLPLLTSAVVGYAVYHRTIVSPFRDVLTVQHATLVSLERIHDDYWQVAEAVNGYLL
SGDTERAVRYAAVAAEVEAQFERLSEAVAADPALVALIGVARAEWSALARDAETVLARPREGLAGAVPDIDRVAALEREL
PVAAQRLEQIVERLRSESEAHHAAALVALRRLEIGAAAALILSVLMMGLGAWVVNRAIVLGTDRLVEGARRVASGQREEP
VAVTVPPELAAVANAFNDMTRTIVEQEARLREFGRRDALTSLLNRREFDHALEQRAAPWTGEPYALLLIDIDRFKRINDT
HGHAVGDAVLRAVALRLAASARQGLPLFRYGGEEFALLLDRAGAAEALSEAEDLRRAVAEEPVGLEDGTRIAVTISVGIA
LGARGQAGAELFAAADRALYAAKDAGRNCSRMDPSVVQA
>Mature_439_residues
MDWARRILYRQSLRGWMALALVLAVLPLLTSAVVGYAVYHRTIVSPFRDVLTVQHATLVSLERIHDDYWQVAEAVNGYLL
SGDTERAVRYAAVAAEVEAQFERLSEAVAADPALVALIGVARAEWSALARDAETVLARPREGLAGAVPDIDRVAALEREL
PVAAQRLEQIVERLRSESEAHHAAALVALRRLEIGAAAALILSVLMMGLGAWVVNRAIVLGTDRLVEGARRVASGQREEP
VAVTVPPELAAVANAFNDMTRTIVEQEARLREFGRRDALTSLLNRREFDHALEQRAAPWTGEPYALLLIDIDRFKRINDT
HGHAVGDAVLRAVALRLAASARQGLPLFRYGGEEFALLLDRAGAAEALSEAEDLRRAVAEEPVGLEDGTRIAVTISVGIA
LGARGQAGAELFAAADRALYAAKDAGRNCSRMDPSVVQA

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=171, Percent_Identity=46.1988304093567, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI145693134, Length=154, Percent_Identity=40.2597402597403, Blast_Score=108, Evalue=6e-25,
Organism=Escherichia coli, GI1787262, Length=163, Percent_Identity=37.4233128834356, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1787816, Length=166, Percent_Identity=36.7469879518072, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1786584, Length=199, Percent_Identity=34.1708542713568, Blast_Score=89, Evalue=6e-19,
Organism=Escherichia coli, GI1788381, Length=173, Percent_Identity=35.8381502890173, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI87082007, Length=163, Percent_Identity=35.5828220858896, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1787802, Length=157, Percent_Identity=31.8471337579618, Blast_Score=76, Evalue=5e-15,
Organism=Escherichia coli, GI1788085, Length=169, Percent_Identity=33.1360946745562, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1788956, Length=159, Percent_Identity=32.0754716981132, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1787056, Length=153, Percent_Identity=34.640522875817, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787541, Length=168, Percent_Identity=33.3333333333333, Blast_Score=72, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 47523; Mature: 47523

Theoretical pI: Translated: 5.54; Mature: 5.54

Prosite motif: PS50885 HAMP ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDWARRILYRQSLRGWMALALVLAVLPLLTSAVVGYAVYHRTIVSPFRDVLTVQHATLVS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LERIHDDYWQVAEAVNGYLLSGDTERAVRYAAVAAEVEAQFERLSEAVAADPALVALIGV
HHHHHHHHHHHHHHHCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
ARAEWSALARDAETVLARPREGLAGAVPDIDRVAALERELPVAAQRLEQIVERLRSESEA
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
HHAAALVALRRLEIGAAAALILSVLMMGLGAWVVNRAIVLGTDRLVEGARRVASGQREEP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHEECHHHHHHHHHHHHCCCCCCC
VAVTVPPELAAVANAFNDMTRTIVEQEARLREFGRRDALTSLLNRREFDHALEQRAAPWT
EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
GEPYALLLIDIDRFKRINDTHGHAVGDAVLRAVALRLAASARQGLPLFRYGGEEFALLLD
CCCCEEEEEEHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHH
RAGAAEALSEAEDLRRAVAEEPVGLEDGTRIAVTISVGIALGARGQAGAELFAAADRALY
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHH
AAKDAGRNCSRMDPSVVQA
HHHHCCCCCCCCCCHHHCC
>Mature Secondary Structure
MDWARRILYRQSLRGWMALALVLAVLPLLTSAVVGYAVYHRTIVSPFRDVLTVQHATLVS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LERIHDDYWQVAEAVNGYLLSGDTERAVRYAAVAAEVEAQFERLSEAVAADPALVALIGV
HHHHHHHHHHHHHHHCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
ARAEWSALARDAETVLARPREGLAGAVPDIDRVAALERELPVAAQRLEQIVERLRSESEA
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
HHAAALVALRRLEIGAAAALILSVLMMGLGAWVVNRAIVLGTDRLVEGARRVASGQREEP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHEECHHHHHHHHHHHHCCCCCCC
VAVTVPPELAAVANAFNDMTRTIVEQEARLREFGRRDALTSLLNRREFDHALEQRAAPWT
EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
GEPYALLLIDIDRFKRINDTHGHAVGDAVLRAVALRLAASARQGLPLFRYGGEEFALLLD
CCCCEEEEEEHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHH
RAGAAEALSEAEDLRRAVAEEPVGLEDGTRIAVTISVGIALGARGQAGAELFAAADRALY
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHH
AAKDAGRNCSRMDPSVVQA
HHHHCCCCCCCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]