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The map label for this gene is potC [H]

Identifier: 77465337

GI number: 77465337

Start: 398710

End: 399546

Strand: Reverse

Name: potC [H]

Synonym: RSP_3335

Alternate gene names: 77465337

Gene position: 399546-398710 (Counterclockwise)

Preceding gene: 77465338

Following gene: 77465336

Centisome position: 42.37

GC content: 67.62

Gene sequence:

>837_bases
ATGGAGCCGCGTCCGCGCTCGTTCTACATCCTCGCCGCCGTCTTCGGCCTGTTCCTCCTGTTCCTCTACGGGCCCACGAT
CACCATCGCGATCCTCTCCTTCCAGGGCCCGGAGGGCGGGCTCACCTTCCCCATGCGCGGCGTCTCGCTGCACTGGTTCC
GCGATCTCTTCCAGGAGCAGGCGGTGGGCGACATCTGGGGCGCCTTCGGCCGGTCGCTCCTGCTGGGCCTTCTCGTCATG
GTCACGACCGTCACCGTGTCGGTGATGGGGGGCCTCGCCTTCCGCAAGAGGTTCGCAGGCTCGGCCCTCCTGTTCCAGCT
CGTTGTGGCCAGCCTCGTGATCCCCTCGATCCTCGTCTCGCTCGGAGTGGGGCTCATCTTCTCGCAGGCGGGCCTGCCGG
TGCACTGGGCGAGTTCGGGCTTCGGCGCGCAGCTCACCTGGACGCTGCCCTTCGGCCTTCTCATCATGTTCGCCGTCTTC
AACCGCTTCAATCCCGCCTACGAAGAGGCCGCGCGCGATCAGGGGGCCAGCGCCTGGCAGACGATCCGCCATGTGGTGCT
GCCGATCATCGCGCCGTCGCTGATCGGGGTGGCCCTGTTCGGCTTCACGCTCTCCTACGACGAATTCGCCCGGACGCTGC
TGACCGCGGGCAGCTACAACACGCTGCCGCTCGAGATCTACGGCATGACCACCAATGTGACGACGCCGGTGATCTTCGCG
CTCGGCACGCTGACCACGGTCTTCTCCTTCGCGGTGATCGGGGTGTTCCTCGTCACCGTCTGGGTGCTCGGGCGCAGGCG
CGCGCGGGCCGGGTCGGATGCGGGCAAGGGGGTCTGA

Upstream 100 bases:

>100_bases
TATCCCTCGGCTTCGGCCACGGCGGTGGTGCTGCTCGCGACCGTGCTTCTCACCATCGGCATCCTGCTGCGCCTCGTCGA
TATCCGGAAGGAGCTCTGAG

Downstream 100 bases:

>100_bases
GTGCGGCTTCTCTACATCAATCCCAATTCCACCGCGACGATGACCGAGGCCGTGGTCGAGGCCGCCCGCGCGGCCGCCCC
GGGGCACGAGATCCTGGGCT

Product: ABC spermidine/putrescine transporter, inner membrane subunit

Products: Phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MEPRPRSFYILAAVFGLFLLFLYGPTITIAILSFQGPEGGLTFPMRGVSLHWFRDLFQEQAVGDIWGAFGRSLLLGLLVM
VTTVTVSVMGGLAFRKRFAGSALLFQLVVASLVIPSILVSLGVGLIFSQAGLPVHWASSGFGAQLTWTLPFGLLIMFAVF
NRFNPAYEEAARDQGASAWQTIRHVVLPIIAPSLIGVALFGFTLSYDEFARTLLTAGSYNTLPLEIYGMTTNVTTPVIFA
LGTLTTVFSFAVIGVFLVTVWVLGRRRARAGSDAGKGV

Sequences:

>Translated_278_residues
MEPRPRSFYILAAVFGLFLLFLYGPTITIAILSFQGPEGGLTFPMRGVSLHWFRDLFQEQAVGDIWGAFGRSLLLGLLVM
VTTVTVSVMGGLAFRKRFAGSALLFQLVVASLVIPSILVSLGVGLIFSQAGLPVHWASSGFGAQLTWTLPFGLLIMFAVF
NRFNPAYEEAARDQGASAWQTIRHVVLPIIAPSLIGVALFGFTLSYDEFARTLLTAGSYNTLPLEIYGMTTNVTTPVIFA
LGTLTTVFSFAVIGVFLVTVWVLGRRRARAGSDAGKGV
>Mature_278_residues
MEPRPRSFYILAAVFGLFLLFLYGPTITIAILSFQGPEGGLTFPMRGVSLHWFRDLFQEQAVGDIWGAFGRSLLLGLLVM
VTTVTVSVMGGLAFRKRFAGSALLFQLVVASLVIPSILVSLGVGLIFSQAGLPVHWASSGFGAQLTWTLPFGLLIMFAVF
NRFNPAYEEAARDQGASAWQTIRHVVLPIIAPSLIGVALFGFTLSYDEFARTLLTAGSYNTLPLEIYGMTTNVTTPVIFA
LGTLTTVFSFAVIGVFLVTVWVLGRRRARAGSDAGKGV

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787368, Length=161, Percent_Identity=28.5714285714286, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787714, Length=225, Percent_Identity=28.8888888888889, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788764, Length=143, Percent_Identity=30.0699300699301, Blast_Score=61, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30037; Mature: 30037

Theoretical pI: Translated: 10.25; Mature: 10.25

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEPRPRSFYILAAVFGLFLLFLYGPTITIAILSFQGPEGGLTFPMRGVSLHWFRDLFQEQ
CCCCCCHHHHHHHHHHHHHHHHHCCHHEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHH
AVGDIWGAFGRSLLLGLLVMVTTVTVSVMGGLAFRKRFAGSALLFQLVVASLVIPSILVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
LGVGLIFSQAGLPVHWASSGFGAQLTWTLPFGLLIMFAVFNRFNPAYEEAARDQGASAWQ
HHHHHHHHCCCCCEEECCCCCCCEEEEHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHH
TIRHVVLPIIAPSLIGVALFGFTLSYDEFARTLLTAGSYNTLPLEIYGMTTNVTTPVIFA
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHH
LGTLTTVFSFAVIGVFLVTVWVLGRRRARAGSDAGKGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MEPRPRSFYILAAVFGLFLLFLYGPTITIAILSFQGPEGGLTFPMRGVSLHWFRDLFQEQ
CCCCCCHHHHHHHHHHHHHHHHHCCHHEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHH
AVGDIWGAFGRSLLLGLLVMVTTVTVSVMGGLAFRKRFAGSALLFQLVVASLVIPSILVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
LGVGLIFSQAGLPVHWASSGFGAQLTWTLPFGLLIMFAVFNRFNPAYEEAARDQGASAWQ
HHHHHHHHCCCCCEEECCCCCCCEEEEHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHH
TIRHVVLPIIAPSLIGVALFGFTLSYDEFARTLLTAGSYNTLPLEIYGMTTNVTTPVIFA
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHH
LGTLTTVFSFAVIGVFLVTVWVLGRRRARAGSDAGKGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]