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The map label for this gene is ykgD [C]

Identifier: 77465315

GI number: 77465315

Start: 369832

End: 370551

Strand: Reverse

Name: ykgD [C]

Synonym: RSP_3309

Alternate gene names: 77465315

Gene position: 370551-369832 (Counterclockwise)

Preceding gene: 77465318

Following gene: 77465314

Centisome position: 39.29

GC content: 75.28

Gene sequence:

>720_bases
ATGACCCAGGCCCTGCATATCCGCAGCTATTCCGGCGCCGGAACCCTGCACGACCACGACCATGCGCAGCTCGTCCTGCA
GATGGCCGGCACGCTCGAGATCGAGGTGGGCGGGCACGGCGCGCGGCTGTCGCAGGCAGTTTCGGCCGTGATCGCGCCGG
GCGAGCCCCACGCGCAGCAGGGCTGCGGCCTCAATCGGTCGCTGGTGCTGGACCTGCCGGCTGCGGCCCTGCCCGAGGGC
GCGCTCGACCGCCGGTTCCTGCCCGTGCCCGAGGCCGCGAGGCGGCTCGTCGAATTCGCGGATCTTTCGGCGGCCACCGG
CACGCTGCCCGAGCGGGTGGGCGGCCCGCTGCTGCGGCTTCTTCTGGACAGCCTCTGGCAGAATGCCCGCCCCTGCCCCT
TCGCACCGCTCGAGGCCGCCATCCGCGCCGAACCCGCGCTCGACTGGACCGTGGACCGGATGGCGCGGATCGCGGGGATG
AGCCGCTCGGCGCTCTACCGGGCGCTTGCGGAGGCCCGCGGCACGACGCCCGCCCGCCTCGTCACAGCGACGCGGATCGC
GCTGGCGCAGGGGGCCCTGCGCCAGCCCGGCCGCTCCCTCGCGGAGCTGGCGGCGGAGCTCGGCTTTTCGGATCAGGCCG
CGCTGACGCGCGCCATGCGGCGCGAGACCGGAAGGACGCCCGGCGCATGGCGCGCGCTCTGGGGGACGCCCGGCCCATGA

Upstream 100 bases:

>100_bases
GCGCCGGCGCCGCAGGTCCAGAGACCTCATGGCGGAGATGGCACCGCGGCGGAACTTGTGGCAGGAGAAGCCGGACGATG
CGCGCGACAGGATCCCGCCC

Downstream 100 bases:

>100_bases
AGCGGGACGGGCGGACAAGACCGCTGGCACCGCCCCGTGCCAGGATCGCCCATCCTTTCCGAAAGCTCTTCCCATGCCGT
CCCGCAGCCTCAGCCTCCTT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator HTH AraC Type; AraC Family Regulatory Helix-Turn-Helix Protein; AraC Family Regulatory Protein; Proline Utilization Regulator; AraC-Family Transcriptional Regulator; AraC-Like Transcription Regulator; Transcription Regulator Protein; Helix-Turn-Helix- Domain Containing Protein AraC Type; Helix-Turn-Helix AraC Type

Number of amino acids: Translated: 239; Mature: 238

Protein sequence:

>239_residues
MTQALHIRSYSGAGTLHDHDHAQLVLQMAGTLEIEVGGHGARLSQAVSAVIAPGEPHAQQGCGLNRSLVLDLPAAALPEG
ALDRRFLPVPEAARRLVEFADLSAATGTLPERVGGPLLRLLLDSLWQNARPCPFAPLEAAIRAEPALDWTVDRMARIAGM
SRSALYRALAEARGTTPARLVTATRIALAQGALRQPGRSLAELAAELGFSDQAALTRAMRRETGRTPGAWRALWGTPGP

Sequences:

>Translated_239_residues
MTQALHIRSYSGAGTLHDHDHAQLVLQMAGTLEIEVGGHGARLSQAVSAVIAPGEPHAQQGCGLNRSLVLDLPAAALPEG
ALDRRFLPVPEAARRLVEFADLSAATGTLPERVGGPLLRLLLDSLWQNARPCPFAPLEAAIRAEPALDWTVDRMARIAGM
SRSALYRALAEARGTTPARLVTATRIALAQGALRQPGRSLAELAAELGFSDQAALTRAMRRETGRTPGAWRALWGTPGP
>Mature_238_residues
TQALHIRSYSGAGTLHDHDHAQLVLQMAGTLEIEVGGHGARLSQAVSAVIAPGEPHAQQGCGLNRSLVLDLPAAALPEGA
LDRRFLPVPEAARRLVEFADLSAATGTLPERVGGPLLRLLLDSLWQNARPCPFAPLEAAIRAEPALDWTVDRMARIAGMS
RSALYRALAEARGTTPARLVTATRIALAQGALRQPGRSLAELAAELGFSDQAALTRAMRRETGRTPGAWRALWGTPGP

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25345; Mature: 25214

Theoretical pI: Translated: 9.41; Mature: 9.41

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQALHIRSYSGAGTLHDHDHAQLVLQMAGTLEIEVGGHGARLSQAVSAVIAPGEPHAQQ
CCCEEEEECCCCCCCCCCCHHHHHHHHHHCEEEEEECCCCHHHHHHHHHHCCCCCCCHHH
GCGLNRSLVLDLPAAALPEGALDRRFLPVPEAARRLVEFADLSAATGTLPERVGGPLLRL
CCCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHCHHHHHH
LLDSLWQNARPCPFAPLEAAIRAEPALDWTVDRMARIAGMSRSALYRALAEARGTTPARL
HHHHHHHCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHH
VTATRIALAQGALRQPGRSLAELAAELGFSDQAALTRAMRRETGRTPGAWRALWGTPGP
HHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCEECCCCCCC
>Mature Secondary Structure 
TQALHIRSYSGAGTLHDHDHAQLVLQMAGTLEIEVGGHGARLSQAVSAVIAPGEPHAQQ
CCEEEEECCCCCCCCCCCHHHHHHHHHHCEEEEEECCCCHHHHHHHHHHCCCCCCCHHH
GCGLNRSLVLDLPAAALPEGALDRRFLPVPEAARRLVEFADLSAATGTLPERVGGPLLRL
CCCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHCHHHHHH
LLDSLWQNARPCPFAPLEAAIRAEPALDWTVDRMARIAGMSRSALYRALAEARGTTPARL
HHHHHHHCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHH
VTATRIALAQGALRQPGRSLAELAAELGFSDQAALTRAMRRETGRTPGAWRALWGTPGP
HHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA