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The map label for this gene is atpD [H]

Identifier: 77461947

GI number: 77461947

Start: 6422891

End: 6424267

Strand: Reverse

Name: atpD [H]

Synonym: Pfl01_5730

Alternate gene names: 77461947

Gene position: 6424267-6422891 (Counterclockwise)

Preceding gene: 77461948

Following gene: 77461946

Centisome position: 99.78

GC content: 57.52

Gene sequence:

>1377_bases
ATGAGTAGCGGACGTATCGTTCAAATCATCGGCGCCGTTATCGACGTGGAATTTCCACGCGACAGCGTACCGAGCATCTA
CGACGCCTTGAAGGTTCAAGGCGCCGAAACCACTCTGGAAGTTCAGCAGCAGCTGGGCGACGGCGTGGTTCGTACCATTG
CGATGGGCTCCACCGAAGGCTTGAAGCGCGGTCTGGACGTCAACAACACTGGCGCAGCCATCTCCGTACCGGTCGGTAAA
GCGACTCTGGGCCGGATCATGGACGTACTGGGCAACCCGATCGACGAAGCTGGCCCGATCGGCGAAGAAGAGCGCTGGGG
TATCCACCGCGCCGCTCCTTCCTTCGCTGAACAAGCCGGTGGCAACGAGCTGCTGGAAACAGGCATCAAGGTTATCGACC
TGGTTTGCCCGTTCGCCAAGGGCGGTAAAGTCGGTCTGTTCGGTGGTGCCGGTGTAGGCAAGACCGTAAACATGATGGAA
CTGATCCGTAACATCGCCATCGAGCACAGCGGTTATTCCGTGTTCGCCGGTGTGGGTGAGCGTACTCGTGAGGGTAACGA
CTTCTACCACGAGATGAAGGACTCCAACGTTCTCGACAAGGTAGCCCTGGTCTACGGTCAGATGAACGAGCCACCGGGAA
ACCGTCTGCGCGTAGCGCTGACCGGTCTGACCATGGCCGAGAAGTTCCGTGACGAAGGTAACGACGTTCTGCTGTTCGTC
GACAACATCTATCGTTACACCCTGGCCGGTACCGAAGTATCCGCACTGCTGGGCCGTATGCCTTCGGCAGTAGGTTACCA
GCCGACCCTGGCTGAAGAGATGGGCGTGCTGCAAGAGCGCATCACTTCGACCAAGCAAGGTTCGATTACTTCGATCCAGG
CCGTATACGTACCAGCGGACGACTTGACTGACCCGTCGCCAGCGACCACGTTTGCTCACCTGGACGCCACCGTCGTTCTG
TCCCGTGACATCGCTTCTCTGGGTATCTACCCGGCGGTAGACCCACTGGACTCGACTTCGCGTCAGCTGGACCCGAACGT
GATCGGCAACGATCACTACGAGACCGCTCGTGGTGTTCAGTACGTGCTGCAGCGTTACAAAGAGCTGAAGGACATCATCG
CGATCCTGGGTATGGACGAGCTGTCGGAAGCCGACAAGCAGTTGGTAAACCGTGCTCGTAAGATCCAGCGCTTCTTGTCG
CAGCCGTTCTTCGTGGCTGAAGTCTTCACCGGTGCTTCGGGTAAATACGTTTCCCTGAAAGACACCATTGCTGGCTTCAA
AGGCATCCTCAACGGTGACTACGACCACCTGCCAGAACAAGCGTTCTACATGGTCGGCGGCATCGAAGAAGCGATCGAGA
AAGCCAAGAAACTGTAA

Upstream 100 bases:

>100_bases
CTACAACAAGGCGCGTCAGGCTGCGATCACCCAAGAGATCTCGGAAATCGTCGGCGGCGCTGCCGCGGTTTAACGGTTCA
AATATTCAGAGGATCCAGCT

Downstream 100 bases:

>100_bases
TCCAGGCGCCCGGCAACGGGCGCTAATTTAGGTTGAGGCAATCAGATGGCTATGACAGTCCATTGCGACATCGTCAGCGC
GGAAGGAGAAATCTTTTCCG

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta [H]

Number of amino acids: Translated: 458; Mature: 457

Protein sequence:

>458_residues
MSSGRIVQIIGAVIDVEFPRDSVPSIYDALKVQGAETTLEVQQQLGDGVVRTIAMGSTEGLKRGLDVNNTGAAISVPVGK
ATLGRIMDVLGNPIDEAGPIGEEERWGIHRAAPSFAEQAGGNELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMME
LIRNIAIEHSGYSVFAGVGERTREGNDFYHEMKDSNVLDKVALVYGQMNEPPGNRLRVALTGLTMAEKFRDEGNDVLLFV
DNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKQGSITSIQAVYVPADDLTDPSPATTFAHLDATVVL
SRDIASLGIYPAVDPLDSTSRQLDPNVIGNDHYETARGVQYVLQRYKELKDIIAILGMDELSEADKQLVNRARKIQRFLS
QPFFVAEVFTGASGKYVSLKDTIAGFKGILNGDYDHLPEQAFYMVGGIEEAIEKAKKL

Sequences:

>Translated_458_residues
MSSGRIVQIIGAVIDVEFPRDSVPSIYDALKVQGAETTLEVQQQLGDGVVRTIAMGSTEGLKRGLDVNNTGAAISVPVGK
ATLGRIMDVLGNPIDEAGPIGEEERWGIHRAAPSFAEQAGGNELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMME
LIRNIAIEHSGYSVFAGVGERTREGNDFYHEMKDSNVLDKVALVYGQMNEPPGNRLRVALTGLTMAEKFRDEGNDVLLFV
DNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKQGSITSIQAVYVPADDLTDPSPATTFAHLDATVVL
SRDIASLGIYPAVDPLDSTSRQLDPNVIGNDHYETARGVQYVLQRYKELKDIIAILGMDELSEADKQLVNRARKIQRFLS
QPFFVAEVFTGASGKYVSLKDTIAGFKGILNGDYDHLPEQAFYMVGGIEEAIEKAKKL
>Mature_457_residues
SSGRIVQIIGAVIDVEFPRDSVPSIYDALKVQGAETTLEVQQQLGDGVVRTIAMGSTEGLKRGLDVNNTGAAISVPVGKA
TLGRIMDVLGNPIDEAGPIGEEERWGIHRAAPSFAEQAGGNELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMEL
IRNIAIEHSGYSVFAGVGERTREGNDFYHEMKDSNVLDKVALVYGQMNEPPGNRLRVALTGLTMAEKFRDEGNDVLLFVD
NIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKQGSITSIQAVYVPADDLTDPSPATTFAHLDATVVLS
RDIASLGIYPAVDPLDSTSRQLDPNVIGNDHYETARGVQYVLQRYKELKDIIAILGMDELSEADKQLVNRARKIQRFLSQ
PFFVAEVFTGASGKYVSLKDTIAGFKGILNGDYDHLPEQAFYMVGGIEEAIEKAKKL

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=466, Percent_Identity=70.1716738197425, Blast_Score=649, Evalue=0.0,
Organism=Homo sapiens, GI50345984, Length=420, Percent_Identity=25.4761904761905, Blast_Score=119, Evalue=5e-27,
Organism=Homo sapiens, GI4757810, Length=420, Percent_Identity=25.4761904761905, Blast_Score=119, Evalue=5e-27,
Organism=Homo sapiens, GI19913424, Length=322, Percent_Identity=27.3291925465839, Blast_Score=108, Evalue=1e-23,
Organism=Homo sapiens, GI19913428, Length=415, Percent_Identity=24.0963855421687, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI19913426, Length=398, Percent_Identity=23.6180904522613, Blast_Score=94, Evalue=3e-19,
Organism=Escherichia coli, GI1790170, Length=460, Percent_Identity=84.5652173913043, Blast_Score=800, Evalue=0.0,
Organism=Escherichia coli, GI1788251, Length=321, Percent_Identity=29.595015576324, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI1790172, Length=436, Percent_Identity=25, Blast_Score=121, Evalue=1e-28,
Organism=Caenorhabditis elegans, GI25144756, Length=466, Percent_Identity=68.0257510729614, Blast_Score=628, Evalue=1e-180,
Organism=Caenorhabditis elegans, GI71988080, Length=367, Percent_Identity=25.6130790190736, Blast_Score=119, Evalue=4e-27,
Organism=Caenorhabditis elegans, GI71988063, Length=367, Percent_Identity=25.6130790190736, Blast_Score=119, Evalue=4e-27,
Organism=Caenorhabditis elegans, GI17565854, Length=321, Percent_Identity=28.3489096573209, Blast_Score=113, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI17510931, Length=355, Percent_Identity=25.6338028169014, Blast_Score=105, Evalue=4e-23,
Organism=Caenorhabditis elegans, GI17570191, Length=410, Percent_Identity=24.390243902439, Blast_Score=103, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI71988074, Length=403, Percent_Identity=23.0769230769231, Blast_Score=99, Evalue=4e-21,
Organism=Saccharomyces cerevisiae, GI6322581, Length=458, Percent_Identity=67.0305676855895, Blast_Score=619, Evalue=1e-178,
Organism=Saccharomyces cerevisiae, GI6319370, Length=371, Percent_Identity=26.4150943396226, Blast_Score=115, Evalue=2e-26,
Organism=Saccharomyces cerevisiae, GI6319603, Length=407, Percent_Identity=25.5528255528256, Blast_Score=105, Evalue=1e-23,
Organism=Saccharomyces cerevisiae, GI6320016, Length=259, Percent_Identity=25.4826254826255, Blast_Score=76, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24638766, Length=465, Percent_Identity=68.3870967741936, Blast_Score=625, Evalue=1e-179,
Organism=Drosophila melanogaster, GI28574560, Length=465, Percent_Identity=63.6559139784946, Blast_Score=575, Evalue=1e-164,
Organism=Drosophila melanogaster, GI24658560, Length=367, Percent_Identity=26.4305177111717, Blast_Score=117, Evalue=2e-26,
Organism=Drosophila melanogaster, GI20129479, Length=334, Percent_Identity=27.8443113772455, Blast_Score=110, Evalue=2e-24,
Organism=Drosophila melanogaster, GI24583992, Length=321, Percent_Identity=27.7258566978193, Blast_Score=109, Evalue=3e-24,
Organism=Drosophila melanogaster, GI24583988, Length=321, Percent_Identity=27.7258566978193, Blast_Score=108, Evalue=1e-23,
Organism=Drosophila melanogaster, GI24583986, Length=321, Percent_Identity=27.7258566978193, Blast_Score=108, Evalue=1e-23,
Organism=Drosophila melanogaster, GI24583984, Length=321, Percent_Identity=27.7258566978193, Blast_Score=108, Evalue=1e-23,
Organism=Drosophila melanogaster, GI281361666, Length=397, Percent_Identity=26.1964735516373, Blast_Score=108, Evalue=1e-23,
Organism=Drosophila melanogaster, GI24646341, Length=397, Percent_Identity=26.1964735516373, Blast_Score=108, Evalue=1e-23,
Organism=Drosophila melanogaster, GI17136796, Length=397, Percent_Identity=26.1964735516373, Blast_Score=108, Evalue=1e-23,
Organism=Drosophila melanogaster, GI24638768, Length=91, Percent_Identity=52.7472527472528, Blast_Score=86, Evalue=6e-17,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 49446; Mature: 49315

Theoretical pI: Translated: 4.67; Mature: 4.67

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSGRIVQIIGAVIDVEFPRDSVPSIYDALKVQGAETTLEVQQQLGDGVVRTIAMGSTEG
CCCCCEEHEEHHHHCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHCCCHHH
LKRGLDVNNTGAAISVPVGKATLGRIMDVLGNPIDEAGPIGEEERWGIHRAAPSFAEQAG
HHCCCCCCCCCCEEEECCCHHHHHHHHHHHCCCCCCCCCCCCHHHCCHHHCCCHHHHHCC
GNELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVGE
CHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCC
RTREGNDFYHEMKDSNVLDKVALVYGQMNEPPGNRLRVALTGLTMAEKFRDEGNDVLLFV
CCCCCCHHHHHHCCCHHHHHHHHHHCCCCCCCCCEEEEEEECHHHHHHHHCCCCEEEEEE
DNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKQGSITSIQAVYVPAD
ECCEEEEECCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCC
DLTDPSPATTFAHLDATVVLSRDIASLGIYPAVDPLDSTSRQLDPNVIGNDHYETARGVQ
CCCCCCCCCEEHHCCEEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHH
YVLQRYKELKDIIAILGMDELSEADKQLVNRARKIQRFLSQPFFVAEVFTGASGKYVSLK
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHCCCCCCEEEHH
DTIAGFKGILNGDYDHLPEQAFYMVGGIEEAIEKAKKL
HHHHHHHHHCCCCHHHCCHHHHHHHCCHHHHHHHHHCC
>Mature Secondary Structure 
SSGRIVQIIGAVIDVEFPRDSVPSIYDALKVQGAETTLEVQQQLGDGVVRTIAMGSTEG
CCCCEEHEEHHHHCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHCCCHHH
LKRGLDVNNTGAAISVPVGKATLGRIMDVLGNPIDEAGPIGEEERWGIHRAAPSFAEQAG
HHCCCCCCCCCCEEEECCCHHHHHHHHHHHCCCCCCCCCCCCHHHCCHHHCCCHHHHHCC
GNELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVGE
CHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCC
RTREGNDFYHEMKDSNVLDKVALVYGQMNEPPGNRLRVALTGLTMAEKFRDEGNDVLLFV
CCCCCCHHHHHHCCCHHHHHHHHHHCCCCCCCCCEEEEEEECHHHHHHHHCCCCEEEEEE
DNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKQGSITSIQAVYVPAD
ECCEEEEECCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCC
DLTDPSPATTFAHLDATVVLSRDIASLGIYPAVDPLDSTSRQLDPNVIGNDHYETARGVQ
CCCCCCCCCEEHHCCEEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHH
YVLQRYKELKDIIAILGMDELSEADKQLVNRARKIQRFLSQPFFVAEVFTGASGKYVSLK
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHCCCCCCEEEHH
DTIAGFKGILNGDYDHLPEQAFYMVGGIEEAIEKAKKL
HHHHHHHHHCCCCHHHCCHHHHHHHCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA