Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
---|---|
Accession | NC_007492 |
Length | 6,438,405 |
Click here to switch to the map view.
The map label for this gene is 77461815
Identifier: 77461815
GI number: 77461815
Start: 6264965
End: 6266440
Strand: Reverse
Name: 77461815
Synonym: Pfl01_5594
Alternate gene names: NA
Gene position: 6266440-6264965 (Counterclockwise)
Preceding gene: 77461816
Following gene: 77461814
Centisome position: 97.33
GC content: 59.35
Gene sequence:
>1476_bases ATGAGCACTAGCGCAGCACAACAGAACGCCGCAGAAAACGGCGAGTACAGCATCCTCGACAGCATCATCGCCGAAACCCG CCTGACGCCGGACGACGAAGCCTACGACATCGCCAAACGCGGTGTGTCGGCGTTCATCGAAGAGCTGCTCAAGCCGCAGA ACAACGGTGAGCCGGTCAAGAAAGCCATGGTTGACCGCATGATCGCCGAGATCGATGCCAAGCTCAGCCGTCAGATGGAC GAAATCCTGCACCACCCGGACTTCCAGGCCCTGGAATCGTCGTGGCGTGGCCTGCAACTGCTGGTCGACCGCACCAACTT CCGCGAAAACATCAAGATCGAAATCCTCAACGTCTCCAAAGAAGACCTGCTGGACGATTTCGAAGACTCGCCGGAAGTGA TGCAGTCGGGCCTGTACAAGCACATCTACACCGCTGAATACGGCCAGTTCGGTGGTCAGCCGGTTGGCGCGATCATTGCC AACTACTACATGTCCCCAAGCTCGCCGGACGTGAAGCTGATGCAGTACGTGTCCAGCGTAGCCTGCATGTCCCACGCACC GTTCATCGCCGCCGCCGGCCCGAAATTCTTCGGCCTGGAAAGCTTCACCGGCCTGCCGGACCTGAAGGATCTGAAAGATC ACTTCGAAGGCCCGCAATTCGCCAAATGGCAGAGCTTCCGTACCTCGGAAGACTCCCGCTACGTCGGCCTGACCGTGCCG CGTTTCCTGCTGCGTAACCCGTACGACCCGGAAGAAAACCCGGTCAAATCGTTCGTGTACAAGGAAAACGTTGCCAACAG CCACGAGCACTACCTGTGGGGCAACACCGCTTACGCGTTCGGCACCAAGCTGACCGACAGCTTCGCCAAGTTCCGCTGGT GCCCGAACATCATCGGCCCACAGAGCGGCGGCGCGGTTGAAGACCTGCCTCTGCACCACTTCGAAAGCATGGGCGAAATC GAAACCAAGATTCCTACCGAAGTTCTGGTTTCCGACCGTCGTGAATACGAACTGGCCGAGGAAGGCTTCATCTCCCTGAC CATGCGCAAAGGCTCCGACAACGCGGCGTTCTTCTCCGCCAGCTCGGTGCAGAAGCCGAAGTTCTTCGGCATCAGCGCAG AAGGCAAGGCGGCAGAGCTGAACTACAAGCTCGGCACCCAACTGCCGTACATGATGATCGTCAACCGCCTGGCTCACTAC CTGAAAGTGCTGCAGCGCGAGCAACTCGGTTCGTGGAAAGAGCGTACCGACCTCGAGCTGGAACTGAACAAGTGGATCCG CCAGTACGTGGCCGACCAGGAAAACCCGAGCGCCGAAGTACGTGGCCGCCGTCCGCTGCGCGCTGCGCAAGTGATCGTCA GCGACGTTGAAGGCGAGCCGGGCTGGTACCGCGTCAGCCTGAACGTGCGCCCGCACTTCAAGTACATGGGTGCCGATTTC ACCCTGTCGCTGGTTGGCAAGCTGGACAAAGAGTAA
Upstream 100 bases:
>100_bases CTCGCCGACGACGAATCCCGCGGTCGCGTACTCGGTGAGCTGGGCCTGAACGCCGCAGCTCCGGACGCTTGAGACTCCAG CAGCCAAGGAAGCCAACACA
Downstream 100 bases:
>100_bases GAGCGACTCATGGACGGATACGGCAGCCTCTTCGAACGCCTCAACGGCGACGCGGAACTACGCAAGGGCAGGAGCCTCGA GGCTTCGGCCATGGCGTCGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 491; Mature: 490
Protein sequence:
>491_residues MSTSAAQQNAAENGEYSILDSIIAETRLTPDDEAYDIAKRGVSAFIEELLKPQNNGEPVKKAMVDRMIAEIDAKLSRQMD EILHHPDFQALESSWRGLQLLVDRTNFRENIKIEILNVSKEDLLDDFEDSPEVMQSGLYKHIYTAEYGQFGGQPVGAIIA NYYMSPSSPDVKLMQYVSSVACMSHAPFIAAAGPKFFGLESFTGLPDLKDLKDHFEGPQFAKWQSFRTSEDSRYVGLTVP RFLLRNPYDPEENPVKSFVYKENVANSHEHYLWGNTAYAFGTKLTDSFAKFRWCPNIIGPQSGGAVEDLPLHHFESMGEI ETKIPTEVLVSDRREYELAEEGFISLTMRKGSDNAAFFSASSVQKPKFFGISAEGKAAELNYKLGTQLPYMMIVNRLAHY LKVLQREQLGSWKERTDLELELNKWIRQYVADQENPSAEVRGRRPLRAAQVIVSDVEGEPGWYRVSLNVRPHFKYMGADF TLSLVGKLDKE
Sequences:
>Translated_491_residues MSTSAAQQNAAENGEYSILDSIIAETRLTPDDEAYDIAKRGVSAFIEELLKPQNNGEPVKKAMVDRMIAEIDAKLSRQMD EILHHPDFQALESSWRGLQLLVDRTNFRENIKIEILNVSKEDLLDDFEDSPEVMQSGLYKHIYTAEYGQFGGQPVGAIIA NYYMSPSSPDVKLMQYVSSVACMSHAPFIAAAGPKFFGLESFTGLPDLKDLKDHFEGPQFAKWQSFRTSEDSRYVGLTVP RFLLRNPYDPEENPVKSFVYKENVANSHEHYLWGNTAYAFGTKLTDSFAKFRWCPNIIGPQSGGAVEDLPLHHFESMGEI ETKIPTEVLVSDRREYELAEEGFISLTMRKGSDNAAFFSASSVQKPKFFGISAEGKAAELNYKLGTQLPYMMIVNRLAHY LKVLQREQLGSWKERTDLELELNKWIRQYVADQENPSAEVRGRRPLRAAQVIVSDVEGEPGWYRVSLNVRPHFKYMGADF TLSLVGKLDKE >Mature_490_residues STSAAQQNAAENGEYSILDSIIAETRLTPDDEAYDIAKRGVSAFIEELLKPQNNGEPVKKAMVDRMIAEIDAKLSRQMDE ILHHPDFQALESSWRGLQLLVDRTNFRENIKIEILNVSKEDLLDDFEDSPEVMQSGLYKHIYTAEYGQFGGQPVGAIIAN YYMSPSSPDVKLMQYVSSVACMSHAPFIAAAGPKFFGLESFTGLPDLKDLKDHFEGPQFAKWQSFRTSEDSRYVGLTVPR FLLRNPYDPEENPVKSFVYKENVANSHEHYLWGNTAYAFGTKLTDSFAKFRWCPNIIGPQSGGAVEDLPLHHFESMGEIE TKIPTEVLVSDRREYELAEEGFISLTMRKGSDNAAFFSASSVQKPKFFGISAEGKAAELNYKLGTQLPYMMIVNRLAHYL KVLQREQLGSWKERTDLELELNKWIRQYVADQENPSAEVRGRRPLRAAQVIVSDVEGEPGWYRVSLNVRPHFKYMGADFT LSLVGKLDKE
Specific function: Unknown
COG id: COG3517
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55589; Mature: 55458
Theoretical pI: Translated: 5.04; Mature: 5.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTSAAQQNAAENGEYSILDSIIAETRLTPDDEAYDIAKRGVSAFIEELLKPQNNGEPVK CCCCHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHH KAMVDRMIAEIDAKLSRQMDEILHHPDFQALESSWRGLQLLVDRTNFRENIKIEILNVSK HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCEEEEEECCCCCCCCEEEEEECCH EDLLDDFEDSPEVMQSGLYKHIYTAEYGQFGGQPVGAIIANYYMSPSSPDVKLMQYVSSV HHHHHHCCCCHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHH ACMSHAPFIAAAGPKFFGLESFTGLPDLKDLKDHFEGPQFAKWQSFRTSEDSRYVGLTVP HHHHCCCEEEECCCCCCCCHHCCCCCCHHHHHHHCCCCCCHHHHHHCCCCCCCEEEEEHH RFLLRNPYDPEENPVKSFVYKENVANSHEHYLWGNTAYAFGTKLTDSFAKFRWCPNIIGP HHHHCCCCCCCCCHHHHHHHHHHCCCCCCCEEECCCHHECCCHHHHHHHHHHCCCCCCCC QSGGAVEDLPLHHFESMGEIETKIPTEVLVSDRREYELAEEGFISLTMRKGSDNAAFFSA CCCCCCCCCCHHHHHHCCCHHHCCCHHHHHCCCHHHHHHHCCEEEEEEECCCCCCEEEEC SSVQKPKFFGISAEGKAAELNYKLGTQLPYMMIVNRLAHYLKVLQREQLGSWKERTDLEL CCCCCCCEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCEE ELNKWIRQYVADQENPSAEVRGRRPLRAAQVIVSDVEGEPGWYRVSLNVRPHFKYMGADF HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCEEEECCCE TLSLVGKLDKE EEEEHHCCCCC >Mature Secondary Structure STSAAQQNAAENGEYSILDSIIAETRLTPDDEAYDIAKRGVSAFIEELLKPQNNGEPVK CCCHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHH KAMVDRMIAEIDAKLSRQMDEILHHPDFQALESSWRGLQLLVDRTNFRENIKIEILNVSK HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCEEEEEECCCCCCCCEEEEEECCH EDLLDDFEDSPEVMQSGLYKHIYTAEYGQFGGQPVGAIIANYYMSPSSPDVKLMQYVSSV HHHHHHCCCCHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHH ACMSHAPFIAAAGPKFFGLESFTGLPDLKDLKDHFEGPQFAKWQSFRTSEDSRYVGLTVP HHHHCCCEEEECCCCCCCCHHCCCCCCHHHHHHHCCCCCCHHHHHHCCCCCCCEEEEEHH RFLLRNPYDPEENPVKSFVYKENVANSHEHYLWGNTAYAFGTKLTDSFAKFRWCPNIIGP HHHHCCCCCCCCCHHHHHHHHHHCCCCCCCEEECCCHHECCCHHHHHHHHHHCCCCCCCC QSGGAVEDLPLHHFESMGEIETKIPTEVLVSDRREYELAEEGFISLTMRKGSDNAAFFSA CCCCCCCCCCHHHHHHCCCHHHCCCHHHHHCCCHHHHHHHCCEEEEEEECCCCCCEEEEC SSVQKPKFFGISAEGKAAELNYKLGTQLPYMMIVNRLAHYLKVLQREQLGSWKERTDLEL CCCCCCCEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCEE ELNKWIRQYVADQENPSAEVRGRRPLRAAQVIVSDVEGEPGWYRVSLNVRPHFKYMGADF HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCEEEECCCE TLSLVGKLDKE EEEEHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA