Click here to switch to the map view.

The map label for this gene is rnk [H]

Identifier: 77461715

GI number: 77461715

Start: 6162948

End: 6163358

Strand: Reverse

Name: rnk [H]

Synonym: Pfl01_5494

Alternate gene names: 77461715

Gene position: 6163358-6162948 (Counterclockwise)

Preceding gene: 77461716

Following gene: 77461711

Centisome position: 95.73

GC content: 61.31

Gene sequence:

>411_bases
ATGACCGCACCTTCCATCACCCTTACCCGTCTGGACGTGCAACGTCTGGAGCGCCTGATCGACAGCCTGGATGACACGCT
GCCGGGCGTGATCGCGCTGCAAACCGAACTGGACCGCGCCGATACCCTGGTCGGTCACGATGAAGTGCCTGCCGATGTCG
TGACGATGAATTCCCGCGTGCACTGCCGTGAAGAGAGCAGTGGCAAGGACTACCACCTGACCCTGGTCTATCCGAAGCAC
GCCAATGCCGACGAAGGCAAAGTCTCGATCCTGGCTCCGGTCGGCAGTGCGCTGCTGGGCCTGAAAGTCGGTCAGCACAT
CGACTGGCCGGCTCCGGGTGGCAAGACCCTGAAACTGACTTTGCTCGAAGTCGAATCGCAGCCGTCCAACGGCGGTGATT
TCCCGGAGTAA

Upstream 100 bases:

>100_bases
TCCGGAAACGCCTCAACCCATCGAGGCCTGGTGAGAACCCCGTCTTTTTTGGCGGGGTTTTGCTTTTTTTGTGTGCAGAA
GAAAGGAGTCTGCCCGGATC

Downstream 100 bases:

>100_bases
CCCGCCTCAGACCTGCTCGAGCGCCTCGTTCAGAGAGCGTTCCAGGTCGGCTTTGTAACGCAGATACAGATTGCTCGAAC
TCTGCCCGTCACCGATCACA

Product: nucleoside diphosphate kinase regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 136; Mature: 135

Protein sequence:

>136_residues
MTAPSITLTRLDVQRLERLIDSLDDTLPGVIALQTELDRADTLVGHDEVPADVVTMNSRVHCREESSGKDYHLTLVYPKH
ANADEGKVSILAPVGSALLGLKVGQHIDWPAPGGKTLKLTLLEVESQPSNGGDFPE

Sequences:

>Translated_136_residues
MTAPSITLTRLDVQRLERLIDSLDDTLPGVIALQTELDRADTLVGHDEVPADVVTMNSRVHCREESSGKDYHLTLVYPKH
ANADEGKVSILAPVGSALLGLKVGQHIDWPAPGGKTLKLTLLEVESQPSNGGDFPE
>Mature_135_residues
TAPSITLTRLDVQRLERLIDSLDDTLPGVIALQTELDRADTLVGHDEVPADVVTMNSRVHCREESSGKDYHLTLVYPKHA
NADEGKVSILAPVGSALLGLKVGQHIDWPAPGGKTLKLTLLEVESQPSNGGDFPE

Specific function: Rnk and sspA can functionally replace P.aeruginosa alginate regulatory gene algR2 [H]

COG id: COG0782

COG function: function code K; Transcription elongation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786827, Length=135, Percent_Identity=44.4444444444444, Blast_Score=104, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001437 [H]

Pfam domain/function: PF01272 GreA_GreB [H]

EC number: NA

Molecular weight: Translated: 14675; Mature: 14544

Theoretical pI: Translated: 4.62; Mature: 4.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAPSITLTRLDVQRLERLIDSLDDTLPGVIALQTELDRADTLVGHDEVPADVVTMNSRV
CCCCCEEEEHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHEECCCCCCCCEEEEECCEE
HCREESSGKDYHLTLVYPKHANADEGKVSILAPVGSALLGLKVGQHIDWPAPGGKTLKLT
EECCCCCCCCEEEEEEECCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCCCCCCCEEEEE
LLEVESQPSNGGDFPE
EEEEECCCCCCCCCCC
>Mature Secondary Structure 
TAPSITLTRLDVQRLERLIDSLDDTLPGVIALQTELDRADTLVGHDEVPADVVTMNSRV
CCCCEEEEHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHEECCCCCCCCEEEEECCEE
HCREESSGKDYHLTLVYPKHANADEGKVSILAPVGSALLGLKVGQHIDWPAPGGKTLKLT
EECCCCCCCCEEEEEEECCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCCCCCCCEEEEE
LLEVESQPSNGGDFPE
EEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]