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The map label for this gene is fecI [H]

Identifier: 77460018

GI number: 77460018

Start: 4297800

End: 4298390

Strand: Direct

Name: fecI [H]

Synonym: Pfl01_3796

Alternate gene names: 77460018

Gene position: 4297800-4298390 (Clockwise)

Preceding gene: 77460016

Following gene: 77460019

Centisome position: 66.75

GC content: 61.42

Gene sequence:

>591_bases
ATGCGATCAATTCTTAATTGCACCCTAATCGCACTCTCGATTGCATCTCTGGCAACGGACGCCCGAAACGAGTATCTGCC
CTCCATGTCGTCCCTCGATCAGCCGTTGAATCAGCAAGTCCAGACGCTCTACAGCGAACACCACGGGTGGCTGCAGGGCT
GGCTTCAACGCAAGTTGGGCAATCGCTGCGATGCGGCCGATCTGGCGCACGATACCTTTTTGCGCCTGCTCACCCGGCAG
GTGATCAAGCCCTTGGGCAACGAGCCCCGGGCGCTGCTGACGCACATTGCCAAAGGTCTGGTGATCGACCGCTGGCGGCG
ACAGGACCTGGAGCGCGCGTACCTGGAAACCATCGCGCACCTGCCCGCCGCCGAAGTGCCGTCGCCGGAAACCCGCTACC
TGATTCTCGAAACCCTGTGGCGCATCGAAGCGCTGCTGCGCGAACTGCCGGAACAGACCCGCGAGACCTTCCTGCTGTCG
CAGATCGAAGGCCTGACCTACGCGCAGATCGCCACGCGCCTGAATGTTTCGCTGATCACCGTCAAACGCCACATGCGTGC
TGCGTTCATTGCCTGCCTGAGTGTCGCCTGA

Upstream 100 bases:

>100_bases
GCAAATAGCCAATCTCCCGGAAGATGGGTAGGCCACTGCGTCGGTGTCAGAAAAGAAAGTGTGAAAGGACAATTGCCATC
ACTCGTTGCGCGCCACTAGA

Downstream 100 bases:

>100_bases
TGAGTTCGTCGATGATCAATCCGCAGATTCTCGGCGAAGCCGCCGACTGGCTGGTGCAACTGCATTCCGGCACCGCCACC
CCGTCCGACCATCAGGCCAT

Product: sigma-24 (FecI)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 196; Mature: 196

Protein sequence:

>196_residues
MRSILNCTLIALSIASLATDARNEYLPSMSSLDQPLNQQVQTLYSEHHGWLQGWLQRKLGNRCDAADLAHDTFLRLLTRQ
VIKPLGNEPRALLTHIAKGLVIDRWRRQDLERAYLETIAHLPAAEVPSPETRYLILETLWRIEALLRELPEQTRETFLLS
QIEGLTYAQIATRLNVSLITVKRHMRAAFIACLSVA

Sequences:

>Translated_196_residues
MRSILNCTLIALSIASLATDARNEYLPSMSSLDQPLNQQVQTLYSEHHGWLQGWLQRKLGNRCDAADLAHDTFLRLLTRQ
VIKPLGNEPRALLTHIAKGLVIDRWRRQDLERAYLETIAHLPAAEVPSPETRYLILETLWRIEALLRELPEQTRETFLLS
QIEGLTYAQIATRLNVSLITVKRHMRAAFIACLSVA
>Mature_196_residues
MRSILNCTLIALSIASLATDARNEYLPSMSSLDQPLNQQVQTLYSEHHGWLQGWLQRKLGNRCDAADLAHDTFLRLLTRQ
VIKPLGNEPRALLTHIAKGLVIDRWRRQDLERAYLETIAHLPAAEVPSPETRYLILETLWRIEALLRELPEQTRETFLLS
QIEGLTYAQIATRLNVSLITVKRHMRAAFIACLSVA

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates the fec genes for iron dicitrate transport (Probable) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790746, Length=154, Percent_Identity=46.1038961038961, Blast_Score=145, Evalue=2e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 22375; Mature: 22375

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSILNCTLIALSIASLATDARNEYLPSMSSLDQPLNQQVQTLYSEHHGWLQGWLQRKLG
CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NRCDAADLAHDTFLRLLTRQVIKPLGNEPRALLTHIAKGLVIDRWRRQDLERAYLETIAH
CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LPAAEVPSPETRYLILETLWRIEALLRELPEQTRETFLLSQIEGLTYAQIATRLNVSLIT
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
VKRHMRAAFIACLSVA
HHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRSILNCTLIALSIASLATDARNEYLPSMSSLDQPLNQQVQTLYSEHHGWLQGWLQRKLG
CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NRCDAADLAHDTFLRLLTRQVIKPLGNEPRALLTHIAKGLVIDRWRRQDLERAYLETIAH
CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LPAAEVPSPETRYLILETLWRIEALLRELPEQTRETFLLSQIEGLTYAQIATRLNVSLIT
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
VKRHMRAAFIACLSVA
HHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2254251; 7610040; 9278503; 8052622 [H]