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The map label for this gene is yciR [C]

Identifier: 77459730

GI number: 77459730

Start: 3986889

End: 3987965

Strand: Direct

Name: yciR [C]

Synonym: Pfl01_3508

Alternate gene names: 77459730

Gene position: 3986889-3987965 (Clockwise)

Preceding gene: 77459728

Following gene: 77459732

Centisome position: 61.92

GC content: 61.0

Gene sequence:

>1077_bases
ATGACTCAACTCTGGATCAGCTTCGCCATTGTCGTTGTGCTGTTGGTCGTGATCGCCGTTCTGATCCGCCGAGTGCGCGC
GCTTCGTCAGCAACTCGCCGAGTATCGCGAACTGCTCACCCGCGCCGCCGAGGGCCAGAACATCCGTCAGGATGGCGACG
CCGACCGCTTCAAGCGCAGCCAGTATTTTGCGCGGATCGGCACTTGGGATTGGGAAGTCGACACGGATCGACTCTATTGG
TCCGACGCAATATTCGGCATGTTCGGCTTCAAGATCGGCGAAGTGACGCCCTCCTATGCGCTGTTCTGTTCCTGCGTACA
CCCCGATGACCGCGCCAGGGTGCGCGCGGGGGAATTGCGATGCCTGGAGACTGGTGAAAACCATGATGAGGAATACCGCG
TGGTCTGGCCCGACGGCACAATCCGCTGGTTGCGGGAAACCGGCAATGTGGTGCGCAACGATCACGACGCGGTGATCAAG
ATGATGGGTGTAGTACGCGACATCACCGAAGAAAAGGCCTCGGCCAGCTACCTCCAGCACCTCGCTCATTTCGACCCGTT
GACCGGCCTGCCCAACCGCCTGGTGCTGGAAGAACGGCTATCGGAAGCACTGGAACATGCGCGCATGACCGAGACGCGGG
TGGCGTTGGTGTTTATCGATCTCAACGGCTTCAAAGCGATCAACGACCGCTACGGTCACGCCGCCGGCGACCGTGTTCTG
ATCACCACCGCCACGCGCCTGAAACGCATCCTTCGGGTCAGCGATACCGTCGCGCGCATCGGCGGCGATGAATTCGTGGT
CATCCTGCAAGGCCTCGCCCCCGGTCTGAACCTGCAGGACGAAGCGCGCAGCATCTGCCAGAAAATCTTCATCGAACTGT
CCCCGCCAATCCCCATCGGCAATGAACAACGCCACATCGGCACCAGCCTCGGCGTCGCCGTATTTCCCGACCACGCACCG
ACCATGGACCGGTTGCTGCACATTGCGGATCTGGCGATGTACGAGGCCAAGCGCAGTGGGAACAATCAGTATCGGTTGGG
CGGCGGGCAGACGCTGAGTCATGGCCGGGCTGATTGA

Upstream 100 bases:

>100_bases
AATACCGGTCATTGGCAACCGTTTGACCCTACGTCGGCCGTGATGGATGATGGCCACCCGCTACCAATCCTGATCGATAG
GCCATGACAGCGACGCTTGA

Downstream 100 bases:

>100_bases
GCCCGACGCTATTTCTCCACAGGCTGAATCGCCACAATCGTCCCGTTGGTGATCATCACCATCACGTATTTGTCATTGAT
CTGTACCCACTGCGCCTGCG

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 358; Mature: 357

Protein sequence:

>358_residues
MTQLWISFAIVVVLLVVIAVLIRRVRALRQQLAEYRELLTRAAEGQNIRQDGDADRFKRSQYFARIGTWDWEVDTDRLYW
SDAIFGMFGFKIGEVTPSYALFCSCVHPDDRARVRAGELRCLETGENHDEEYRVVWPDGTIRWLRETGNVVRNDHDAVIK
MMGVVRDITEEKASASYLQHLAHFDPLTGLPNRLVLEERLSEALEHARMTETRVALVFIDLNGFKAINDRYGHAAGDRVL
ITTATRLKRILRVSDTVARIGGDEFVVILQGLAPGLNLQDEARSICQKIFIELSPPIPIGNEQRHIGTSLGVAVFPDHAP
TMDRLLHIADLAMYEAKRSGNNQYRLGGGQTLSHGRAD

Sequences:

>Translated_358_residues
MTQLWISFAIVVVLLVVIAVLIRRVRALRQQLAEYRELLTRAAEGQNIRQDGDADRFKRSQYFARIGTWDWEVDTDRLYW
SDAIFGMFGFKIGEVTPSYALFCSCVHPDDRARVRAGELRCLETGENHDEEYRVVWPDGTIRWLRETGNVVRNDHDAVIK
MMGVVRDITEEKASASYLQHLAHFDPLTGLPNRLVLEERLSEALEHARMTETRVALVFIDLNGFKAINDRYGHAAGDRVL
ITTATRLKRILRVSDTVARIGGDEFVVILQGLAPGLNLQDEARSICQKIFIELSPPIPIGNEQRHIGTSLGVAVFPDHAP
TMDRLLHIADLAMYEAKRSGNNQYRLGGGQTLSHGRAD
>Mature_357_residues
TQLWISFAIVVVLLVVIAVLIRRVRALRQQLAEYRELLTRAAEGQNIRQDGDADRFKRSQYFARIGTWDWEVDTDRLYWS
DAIFGMFGFKIGEVTPSYALFCSCVHPDDRARVRAGELRCLETGENHDEEYRVVWPDGTIRWLRETGNVVRNDHDAVIKM
MGVVRDITEEKASASYLQHLAHFDPLTGLPNRLVLEERLSEALEHARMTETRVALVFIDLNGFKAINDRYGHAAGDRVLI
TTATRLKRILRVSDTVARIGGDEFVVILQGLAPGLNLQDEARSICQKIFIELSPPIPIGNEQRHIGTSLGVAVFPDHAPT
MDRLLHIADLAMYEAKRSGNNQYRLGGGQTLSHGRAD

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=178, Percent_Identity=34.2696629213483, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1788381, Length=178, Percent_Identity=37.6404494382022, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI87081977, Length=159, Percent_Identity=34.5911949685535, Blast_Score=95, Evalue=6e-21,
Organism=Escherichia coli, GI145693134, Length=191, Percent_Identity=32.4607329842932, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1788956, Length=167, Percent_Identity=34.7305389221557, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI87081881, Length=212, Percent_Identity=33.4905660377358, Blast_Score=88, Evalue=8e-19,
Organism=Escherichia coli, GI87082007, Length=171, Percent_Identity=35.672514619883, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1787816, Length=168, Percent_Identity=35.7142857142857, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1786584, Length=166, Percent_Identity=32.5301204819277, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1787262, Length=168, Percent_Identity=29.1666666666667, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI87081974, Length=159, Percent_Identity=30.188679245283, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1787802, Length=169, Percent_Identity=30.7692307692308, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787056, Length=163, Percent_Identity=33.1288343558282, Blast_Score=65, Evalue=9e-12,
Organism=Escherichia coli, GI87081921, Length=179, Percent_Identity=25.1396648044693, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 40475; Mature: 40344

Theoretical pI: Translated: 6.74; Mature: 6.74

Prosite motif: PS50113 PAC ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQLWISFAIVVVLLVVIAVLIRRVRALRQQLAEYRELLTRAAEGQNIRQDGDADRFKRS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
QYFARIGTWDWEVDTDRLYWSDAIFGMFGFKIGEVTPSYALFCSCVHPDDRARVRAGELR
HHHHHCCCCCCEECCCCEEHHHHHHHHHCCCHHCCCCCHHEEEEECCCCCCCCEECCCEE
CLETGENHDEEYRVVWPDGTIRWLRETGNVVRNDHDAVIKMMGVVRDITEEKASASYLQH
EEECCCCCCCCEEEECCCCHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LAHFDPLTGLPNRLVLEERLSEALEHARMTETRVALVFIDLNGFKAINDRYGHAAGDRVL
HHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCEEHHHCCCCCCCCEEE
ITTATRLKRILRVSDTVARIGGDEFVVILQGLAPGLNLQDEARSICQKIFIELSPPIPIG
EEEHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
NEQRHIGTSLGVAVFPDHAPTMDRLLHIADLAMYEAKRSGNNQYRLGGGQTLSHGRAD
CCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCC
>Mature Secondary Structure 
TQLWISFAIVVVLLVVIAVLIRRVRALRQQLAEYRELLTRAAEGQNIRQDGDADRFKRS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
QYFARIGTWDWEVDTDRLYWSDAIFGMFGFKIGEVTPSYALFCSCVHPDDRARVRAGELR
HHHHHCCCCCCEECCCCEEHHHHHHHHHCCCHHCCCCCHHEEEEECCCCCCCCEECCCEE
CLETGENHDEEYRVVWPDGTIRWLRETGNVVRNDHDAVIKMMGVVRDITEEKASASYLQH
EEECCCCCCCCEEEECCCCHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LAHFDPLTGLPNRLVLEERLSEALEHARMTETRVALVFIDLNGFKAINDRYGHAAGDRVL
HHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCEEHHHCCCCCCCCEEE
ITTATRLKRILRVSDTVARIGGDEFVVILQGLAPGLNLQDEARSICQKIFIELSPPIPIG
EEEHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
NEQRHIGTSLGVAVFPDHAPTMDRLLHIADLAMYEAKRSGNNQYRLGGGQTLSHGRAD
CCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]