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The map label for this gene is ybcK [H]

Identifier: 77459702

GI number: 77459702

Start: 3962384

End: 3963982

Strand: Direct

Name: ybcK [H]

Synonym: Pfl01_3480

Alternate gene names: 77459702

Gene position: 3962384-3963982 (Clockwise)

Preceding gene: 77459701

Following gene: 255961272

Centisome position: 61.54

GC content: 49.84

Gene sequence:

>1599_bases
ATGAAACAAGCGATTTCCTACGTTCGATTCTCCAGCGATAGGCAGCGTCACGGTTCGAGCGTTGAACGTCAAGAAGGCAT
GATTGCTGATTGGCTCAAACGGCATCCCGATTACGAGATGTCAGACCTGAAGTTTTCCGACCTAGGCAAGAGCGGTTATC
ACGGGGAACACATCAAAGAGGCTGGCGGGTTTGGAAAGCTCCTGAAAGCGTTGGAGGATGGTTTCATCAGGGCTGGTGAC
GTGGTGCTGGTTGAGGCCATAGACCGCACAGGACGCCTTGAACCAATGGACATGCTGACGTTGGTTATCAATCCGATCCT
GAAGGCTGGTGTCTCAATCATCACTCTGGATGACAACACAACGTACTCCAAGGAATCCGTTAACACTGCTCAGATATTCC
TGTTGGTGGCGAAGATTCAAGCTGCTCACGGCTATTCAGCAGCACTCTCAACCCGCGTTGCCGACTCTTACAAGAAGCGT
AGAAAGGACGCTGCTAAATACGGGATCGTCCCTAGACGCATCACCCCTGTATGGCTGAACCCTGACGGTACGGTGAGGGA
GGATGTAGCGCCATGGATCAAGACAGCCTTTGAGCTGTACGTTTCTGGTGTAGGCAAATCGACAATTGCCAAGCGTATGC
GTGAAAGCGGCGTTGAAAGACTGGCTAAGGCTTCTGGCCCCGGCGTTGAAGGTTGGCTTAGGAACAAGGCTGTGATTGGC
AAGTGGGAGACGTTAGAAGGCACTCCAGACCATCAAATCATTGATGACATCTACCCTGCGATCATTGAACCATCGTTGTT
CTACAAAGCTCAGGTTCACGCTGAGAAGATGAAGACACAACGCCCAATCAAGACAGCAAGCCATTTTCTAGTTGGGCTTG
TGAGGTGTGGTGAGTGCGGTAAGAACTACATCGTGCAGAATCTACACGGTAAGCCTCACAGCATGCGTTGCCGTACACGA
CAGAGCCAGAACGAATGCACAAACTCTCACTGTGTACCTAAACCTGTCCTAGATGCTATCTACAGGTATACATCTGTCAC
AGCAGCTATAGAGGCCGTGCAGCAGCAACAGATGGGCGTCAATGACAAAGAGATTGTCACAAGAGAAGCTGAGCTACTGG
CAATCACCAAGCGCGTTGATGGCCTTGTACAAGCCCTTACACAGACTGGCCCTATACCAGAGGTCATAGAGGCACTTAAA
CAGTCTAGAATCGAGCGTGAGGCGGCTGAAAGTGCATTAGTGATACTAAGGTCTACGGTTGTTCCTTCCGCCGGTACACA
TTGGCAGGAAATGGGGAAGGTGTGGAAACTTGAAGCTGCTGATGCACAGCGCCTAGCAGCTATGCTTAAGTTGGTTGACT
ATCACATCACCGTAGCACCTACAGGCGAGATTACAGCGTCACATTCTGAAGTGCTGTACAGATACATTGGTGTTGATCGT
GCTCTTGACAAATACAAGCTTCTAGCTAATGGAAAGCTTATGCTGATCCCTAAAGGGTACGTTGACGACTTCCCTTATCA
TGAGCCATTTCAAGAGATGCAGTCGGAAAACACATGGGATGAAGCTGACTATGACAATCTACGTCAACAGCACCAATGA

Upstream 100 bases:

>100_bases
TGCCGCCAACTTGCATCCCCATGATCCCCTGATCCCAACAATATCGTATGTAACACTGAGCCTCTGTTATCCTCCCGTCC
AGCATTTACAGGGGCTTTCC

Downstream 100 bases:

>100_bases
TTGACAGATAGAGGTAGTGTGTTACACTGTAACAACGAGTCACACAGCATATTCCCATCCTTGTCTTTGTTGTGTGGCTC
AACCAGTTTAGTGGTGGTTC

Product: recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 532; Mature: 532

Protein sequence:

>532_residues
MKQAISYVRFSSDRQRHGSSVERQEGMIADWLKRHPDYEMSDLKFSDLGKSGYHGEHIKEAGGFGKLLKALEDGFIRAGD
VVLVEAIDRTGRLEPMDMLTLVINPILKAGVSIITLDDNTTYSKESVNTAQIFLLVAKIQAAHGYSAALSTRVADSYKKR
RKDAAKYGIVPRRITPVWLNPDGTVREDVAPWIKTAFELYVSGVGKSTIAKRMRESGVERLAKASGPGVEGWLRNKAVIG
KWETLEGTPDHQIIDDIYPAIIEPSLFYKAQVHAEKMKTQRPIKTASHFLVGLVRCGECGKNYIVQNLHGKPHSMRCRTR
QSQNECTNSHCVPKPVLDAIYRYTSVTAAIEAVQQQQMGVNDKEIVTREAELLAITKRVDGLVQALTQTGPIPEVIEALK
QSRIEREAAESALVILRSTVVPSAGTHWQEMGKVWKLEAADAQRLAAMLKLVDYHITVAPTGEITASHSEVLYRYIGVDR
ALDKYKLLANGKLMLIPKGYVDDFPYHEPFQEMQSENTWDEADYDNLRQQHQ

Sequences:

>Translated_532_residues
MKQAISYVRFSSDRQRHGSSVERQEGMIADWLKRHPDYEMSDLKFSDLGKSGYHGEHIKEAGGFGKLLKALEDGFIRAGD
VVLVEAIDRTGRLEPMDMLTLVINPILKAGVSIITLDDNTTYSKESVNTAQIFLLVAKIQAAHGYSAALSTRVADSYKKR
RKDAAKYGIVPRRITPVWLNPDGTVREDVAPWIKTAFELYVSGVGKSTIAKRMRESGVERLAKASGPGVEGWLRNKAVIG
KWETLEGTPDHQIIDDIYPAIIEPSLFYKAQVHAEKMKTQRPIKTASHFLVGLVRCGECGKNYIVQNLHGKPHSMRCRTR
QSQNECTNSHCVPKPVLDAIYRYTSVTAAIEAVQQQQMGVNDKEIVTREAELLAITKRVDGLVQALTQTGPIPEVIEALK
QSRIEREAAESALVILRSTVVPSAGTHWQEMGKVWKLEAADAQRLAAMLKLVDYHITVAPTGEITASHSEVLYRYIGVDR
ALDKYKLLANGKLMLIPKGYVDDFPYHEPFQEMQSENTWDEADYDNLRQQHQ
>Mature_532_residues
MKQAISYVRFSSDRQRHGSSVERQEGMIADWLKRHPDYEMSDLKFSDLGKSGYHGEHIKEAGGFGKLLKALEDGFIRAGD
VVLVEAIDRTGRLEPMDMLTLVINPILKAGVSIITLDDNTTYSKESVNTAQIFLLVAKIQAAHGYSAALSTRVADSYKKR
RKDAAKYGIVPRRITPVWLNPDGTVREDVAPWIKTAFELYVSGVGKSTIAKRMRESGVERLAKASGPGVEGWLRNKAVIG
KWETLEGTPDHQIIDDIYPAIIEPSLFYKAQVHAEKMKTQRPIKTASHFLVGLVRCGECGKNYIVQNLHGKPHSMRCRTR
QSQNECTNSHCVPKPVLDAIYRYTSVTAAIEAVQQQQMGVNDKEIVTREAELLAITKRVDGLVQALTQTGPIPEVIEALK
QSRIEREAAESALVILRSTVVPSAGTHWQEMGKVWKLEAADAQRLAAMLKLVDYHITVAPTGEITASHSEVLYRYIGVDR
ALDKYKLLANGKLMLIPKGYVDDFPYHEPFQEMQSENTWDEADYDNLRQQHQ

Specific function: Unknown

COG id: COG1961

COG function: function code L; Site-specific recombinases, DNA invertase Pin homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 recombinase domain [H]

Homologues:

Organism=Escherichia coli, GI1786756, Length=458, Percent_Identity=29.4759825327511, Blast_Score=152, Evalue=4e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011109
- InterPro:   IPR006119 [H]

Pfam domain/function: PF07508 Recombinase; PF00239 Resolvase [H]

EC number: NA

Molecular weight: Translated: 59597; Mature: 59597

Theoretical pI: Translated: 8.41; Mature: 8.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQAISYVRFSSDRQRHGSSVERQEGMIADWLKRHPDYEMSDLKFSDLGKSGYHGEHIKE
CCHHHHHHHHCCCHHHCCCCHHHHCCHHHHHHHCCCCCCCCCCCHHHCCCCCCCCHHHHH
AGGFGKLLKALEDGFIRAGDVVLVEAIDRTGRLEPMDMLTLVINPILKAGVSIITLDDNT
CCCHHHHHHHHHCCCEECCCEEEEEEHHCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCC
TYSKESVNTAQIFLLVAKIQAAHGYSAALSTRVADSYKKRRKDAAKYGIVPRRITPVWLN
CCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEC
PDGTVREDVAPWIKTAFELYVSGVGKSTIAKRMRESGVERLAKASGPGVEGWLRNKAVIG
CCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCEEEC
KWETLEGTPDHQIIDDIYPAIIEPSLFYKAQVHAEKMKTQRPIKTASHFLVGLVRCGECG
CCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
KNYIVQNLHGKPHSMRCRTRQSQNECTNSHCVPKPVLDAIYRYTSVTAAIEAVQQQQMGV
CHHHHHCCCCCCCCCHHHHCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
NDKEIVTREAELLAITKRVDGLVQALTQTGPIPEVIEALKQSRIEREAAESALVILRSTV
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VPSAGTHWQEMGKVWKLEAADAQRLAAMLKLVDYHITVAPTGEITASHSEVLYRYIGVDR
CCCCCCCHHHHCCEEEECHHHHHHHHHHHHHHHHEEEEECCCCCCCCHHHHHHHHHHHHH
ALDKYKLLANGKLMLIPKGYVDDFPYHEPFQEMQSENTWDEADYDNLRQQHQ
HHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHCC
>Mature Secondary Structure
MKQAISYVRFSSDRQRHGSSVERQEGMIADWLKRHPDYEMSDLKFSDLGKSGYHGEHIKE
CCHHHHHHHHCCCHHHCCCCHHHHCCHHHHHHHCCCCCCCCCCCHHHCCCCCCCCHHHHH
AGGFGKLLKALEDGFIRAGDVVLVEAIDRTGRLEPMDMLTLVINPILKAGVSIITLDDNT
CCCHHHHHHHHHCCCEECCCEEEEEEHHCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCC
TYSKESVNTAQIFLLVAKIQAAHGYSAALSTRVADSYKKRRKDAAKYGIVPRRITPVWLN
CCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEC
PDGTVREDVAPWIKTAFELYVSGVGKSTIAKRMRESGVERLAKASGPGVEGWLRNKAVIG
CCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCEEEC
KWETLEGTPDHQIIDDIYPAIIEPSLFYKAQVHAEKMKTQRPIKTASHFLVGLVRCGECG
CCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
KNYIVQNLHGKPHSMRCRTRQSQNECTNSHCVPKPVLDAIYRYTSVTAAIEAVQQQQMGV
CHHHHHCCCCCCCCCHHHHCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
NDKEIVTREAELLAITKRVDGLVQALTQTGPIPEVIEALKQSRIEREAAESALVILRSTV
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VPSAGTHWQEMGKVWKLEAADAQRLAAMLKLVDYHITVAPTGEITASHSEVLYRYIGVDR
CCCCCCCHHHHCCEEEECHHHHHHHHHHHHHHHHEEEEECCCCCCCCHHHHHHHHHHHHH
ALDKYKLLANGKLMLIPKGYVDDFPYHEPFQEMQSENTWDEADYDNLRQQHQ
HHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]