| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is fdoG [H]
Identifier: 77458923
GI number: 77458923
Start: 3107514
End: 3109976
Strand: Direct
Name: fdoG [H]
Synonym: Pfl01_2698
Alternate gene names: 77458923
Gene position: 3107514-3109976 (Clockwise)
Preceding gene: 77458922
Following gene: 77458924
Centisome position: 48.27
GC content: 61.35
Gene sequence:
>2463_bases GTGGCAAGTCTTGCCCCGACGTACGGCCGTGGAGCCATGACCAACACCTGGACCGATATCGCCAATGCGAATCTGATCCT GGTGATGGGCGGCAACGCAGCAGAAGCCCACCCTTGTGGCTTCAAATGGGTGACCGAAGCCAAGGCGCACAACGCCGCGC GGCTGATTGTGGTCGATCCGAGGTTTACCCGGACCGCATCCGTGGCCGATTACTACGCGCCGATTCGCACCGGCAGCGAC ATCGCGTTCATGGGCGGGCTGATCAATTACCTGCTGACCGAGGACAAGATCCAGCACGAATACGTGCGCAACTACACCGA CGTATCGTTCATTGTCAGAGCCGGATTCGGCTTCGAGGACGGGCTGTTCACCGGTTACGACGCGGCCAAGCGCAGCTACA CCGACAAATCCACCTGGGGTTACGAACTGGGCGAGGACGGCTTCGTCAAAGTCGACCCGACCCTGCAGGACCCGCGCTGC GTCTATCAACTGATGAAGCAGCATTACAGCCGCTACAACATCGACCTGGCGAGCCAGATCTGCGGCATGCCGGTCGATGC GATGAAAAAGATCTGGGAGGAAATCGCCACTTGCTCGGCGCCGGGCAAGACCATGACGATTCTTTATGCACTGGGCTGGA CCCAGCACTCGATCGGCTCGCAGATCATTCGCAGCGCGGCGATGGTGCAACTGCTGCTGGGTAACGTCGGCATGCCCGGC GGCGGGGTCAATGCTTTGCGCGGGCACTCGAACATTCAGGGCCTGACCGACCTTGGTCTGCTGTCCAACGCGCTGCCGGG TTACCTGACCTTGCCGACCGACGCCGAGCAGGATTACGCGGCCTTCATCCATAAACGCACGCAAGTCCCGCTGCGGCCGG GGCAATTGTCCTACTGGCAGAACTACAGCAAATTCCACGTCAGCCTGATGAAAGCCTGGTACGGCGCCAATGCCACCGCC GAGAATCAGTGGGCCTACCACTACTTGCCGAAACTCGACATCCCCAACTACGACATCCTCAAGGTGTTCGACCTGATGGG GCAGGGCAAGGTCAACGGCTACATGTGTCAGGGCTTCAACCCGATTGCCGCGCTGCCGGACAAGAACCGGGTGATGGCGG CACTGGCCAAACTGAAATGGCTGGTGGTGATGGACCCGCTGGCCACCGAAACTTCGCAGTTCTGGGAACACGTCGGGCCA TTCAACGATGTGAAGAGCGCCGACATCCAGACCGAAGTCATCCGCCTGCCAACCACCTGTTTTGCCGAAGAGGACGGCTC GCTGGTCAACAGCAGCCGCTGGCTGCAATGGCATTGGAAAGGCGCCGACGGCCCCGGCGAGGCGCGCACCGACGTGCAAA TCATGAGTGCGCTGTTCCTGCGTCTGCGTGAGCGATATCAGGCGGAGGGCGGCAAATTCGCCGACCCGCTGTTGAAACTG TCGTGGCCGTACAAGATCGCCGAAGAACCCTCGCCGGAAGAGATCGCCAAAGAGGTCAACGGCTACGCCACCACCGATTT CACCGACGCCACGGGTGCGGCGATCAAGGGCAATTCGCAACTGGCCGGGTTCGCCCAGCTCAAGGATGACGGCAGTACCG CGTCCGGCTGCTGGATTTTCTGCGGCAGCTGGACCGAAGCCGGCAACCAGATGGCCCGCCGCGACAACAACGACCCTTAC GGCATGCATCAGCATCAAGGCTGGGCATGGGCCTGGCCGGCCAACCGGCGGATTCTCTATAACCGCGCTTCGGCGGACGT CGCCGGCAAGCCGTGGGATCCGAAAAAGCGCCTGGTCTGGTGGAACGGCAAGGCCTGGGGCGGCACCGATGTGCCGGATT ACAAGGCCGACGTGCCGCCGGAAGCCGGGATGAACCCGTTCATCATGAACCCCGAAGGCGTGGCGCGGTTCTTCGCCGTC GACAAGATGAACGAAGGGCCATTTCCCGAGCATTACGAGCCGTTCGAAACGCCGATCGGCATCAACCCGCTGCACCCGGA CAACAAGAAAGCCACCAGCAACCCGGCGGCACGGATCTTCGATTCGGTGTGGGACAGCCTCGGCGTGGCCAAGGATTACC CGTACGCCGCCACCAGCTACCGGTTGACCGAGCACTTCCACTTCTGGAGCAAGCACTGCAAGTTGAACGCGATTGCTCAA CCCGAGCAATTCGTGGAAATCGGCGAGGTGTTGGCCAAAGAGAAAGGCATCGTCGCCGGGGATCGGGTTCGCGTGAGCAG CAAGCGCGGGTTCATTGAAGCGGTGGCGGTGGTGACCAAAAGGATCCGGCCGTTGCAGGTCAACAACCAGGTGGTGCACC AGATCGGCATTCCGCTGCACTGGGGCTTCACCGGCCTGACGCGCCACGGTTACCTGACCAACACCCTGGTGCCGTTTCTC GGCGATGGCAATACACAGACCCCGGAATCCAAGTCATTCCTGGTCAACGTGGAGAAGCTCTGA
Upstream 100 bases:
>100_bases GGCGGCGTCCAACGAAGCGGGTTACATCACCCACAAGGTGGTGCGCAGTCTCGGCATGCTGGGGTTCGATAACCAGGCGC GTGTCTGACACGGCCCGACG
Downstream 100 bases:
>100_bases TGGAGAATCTTTAGATGGCCAGCCAAGACATCATTGCCCGCTCGGCCACCACCACGCCGGCGCCTTCGATACGCGGCCAG GAACAGGTGGCCAAGCTGAT
Product: formate dehydrogenase subunit alpha
Products: NA
Alternate protein names: Aerobic formate dehydrogenase major subunit; FDH-Z subunit alpha; Formate dehydrogenase-O subunit alpha [H]
Number of amino acids: Translated: 820; Mature: 819
Protein sequence:
>820_residues MASLAPTYGRGAMTNTWTDIANANLILVMGGNAAEAHPCGFKWVTEAKAHNAARLIVVDPRFTRTASVADYYAPIRTGSD IAFMGGLINYLLTEDKIQHEYVRNYTDVSFIVRAGFGFEDGLFTGYDAAKRSYTDKSTWGYELGEDGFVKVDPTLQDPRC VYQLMKQHYSRYNIDLASQICGMPVDAMKKIWEEIATCSAPGKTMTILYALGWTQHSIGSQIIRSAAMVQLLLGNVGMPG GGVNALRGHSNIQGLTDLGLLSNALPGYLTLPTDAEQDYAAFIHKRTQVPLRPGQLSYWQNYSKFHVSLMKAWYGANATA ENQWAYHYLPKLDIPNYDILKVFDLMGQGKVNGYMCQGFNPIAALPDKNRVMAALAKLKWLVVMDPLATETSQFWEHVGP FNDVKSADIQTEVIRLPTTCFAEEDGSLVNSSRWLQWHWKGADGPGEARTDVQIMSALFLRLRERYQAEGGKFADPLLKL SWPYKIAEEPSPEEIAKEVNGYATTDFTDATGAAIKGNSQLAGFAQLKDDGSTASGCWIFCGSWTEAGNQMARRDNNDPY GMHQHQGWAWAWPANRRILYNRASADVAGKPWDPKKRLVWWNGKAWGGTDVPDYKADVPPEAGMNPFIMNPEGVARFFAV DKMNEGPFPEHYEPFETPIGINPLHPDNKKATSNPAARIFDSVWDSLGVAKDYPYAATSYRLTEHFHFWSKHCKLNAIAQ PEQFVEIGEVLAKEKGIVAGDRVRVSSKRGFIEAVAVVTKRIRPLQVNNQVVHQIGIPLHWGFTGLTRHGYLTNTLVPFL GDGNTQTPESKSFLVNVEKL
Sequences:
>Translated_820_residues MASLAPTYGRGAMTNTWTDIANANLILVMGGNAAEAHPCGFKWVTEAKAHNAARLIVVDPRFTRTASVADYYAPIRTGSD IAFMGGLINYLLTEDKIQHEYVRNYTDVSFIVRAGFGFEDGLFTGYDAAKRSYTDKSTWGYELGEDGFVKVDPTLQDPRC VYQLMKQHYSRYNIDLASQICGMPVDAMKKIWEEIATCSAPGKTMTILYALGWTQHSIGSQIIRSAAMVQLLLGNVGMPG GGVNALRGHSNIQGLTDLGLLSNALPGYLTLPTDAEQDYAAFIHKRTQVPLRPGQLSYWQNYSKFHVSLMKAWYGANATA ENQWAYHYLPKLDIPNYDILKVFDLMGQGKVNGYMCQGFNPIAALPDKNRVMAALAKLKWLVVMDPLATETSQFWEHVGP FNDVKSADIQTEVIRLPTTCFAEEDGSLVNSSRWLQWHWKGADGPGEARTDVQIMSALFLRLRERYQAEGGKFADPLLKL SWPYKIAEEPSPEEIAKEVNGYATTDFTDATGAAIKGNSQLAGFAQLKDDGSTASGCWIFCGSWTEAGNQMARRDNNDPY GMHQHQGWAWAWPANRRILYNRASADVAGKPWDPKKRLVWWNGKAWGGTDVPDYKADVPPEAGMNPFIMNPEGVARFFAV DKMNEGPFPEHYEPFETPIGINPLHPDNKKATSNPAARIFDSVWDSLGVAKDYPYAATSYRLTEHFHFWSKHCKLNAIAQ PEQFVEIGEVLAKEKGIVAGDRVRVSSKRGFIEAVAVVTKRIRPLQVNNQVVHQIGIPLHWGFTGLTRHGYLTNTLVPFL GDGNTQTPESKSFLVNVEKL >Mature_819_residues ASLAPTYGRGAMTNTWTDIANANLILVMGGNAAEAHPCGFKWVTEAKAHNAARLIVVDPRFTRTASVADYYAPIRTGSDI AFMGGLINYLLTEDKIQHEYVRNYTDVSFIVRAGFGFEDGLFTGYDAAKRSYTDKSTWGYELGEDGFVKVDPTLQDPRCV YQLMKQHYSRYNIDLASQICGMPVDAMKKIWEEIATCSAPGKTMTILYALGWTQHSIGSQIIRSAAMVQLLLGNVGMPGG GVNALRGHSNIQGLTDLGLLSNALPGYLTLPTDAEQDYAAFIHKRTQVPLRPGQLSYWQNYSKFHVSLMKAWYGANATAE NQWAYHYLPKLDIPNYDILKVFDLMGQGKVNGYMCQGFNPIAALPDKNRVMAALAKLKWLVVMDPLATETSQFWEHVGPF NDVKSADIQTEVIRLPTTCFAEEDGSLVNSSRWLQWHWKGADGPGEARTDVQIMSALFLRLRERYQAEGGKFADPLLKLS WPYKIAEEPSPEEIAKEVNGYATTDFTDATGAAIKGNSQLAGFAQLKDDGSTASGCWIFCGSWTEAGNQMARRDNNDPYG MHQHQGWAWAWPANRRILYNRASADVAGKPWDPKKRLVWWNGKAWGGTDVPDYKADVPPEAGMNPFIMNPEGVARFFAVD KMNEGPFPEHYEPFETPIGINPLHPDNKKATSNPAARIFDSVWDSLGVAKDYPYAATSYRLTEHFHFWSKHCKLNAIAQP EQFVEIGEVLAKEKGIVAGDRVRVSSKRGFIEAVAVVTKRIRPLQVNNQVVHQIGIPLHWGFTGLTRHGYLTNTLVPFLG DGNTQTPESKSFLVNVEKL
Specific function: Allows to use formate as major electron donor during aerobic respiration. Subunit alpha possibly forms the active site [H]
COG id: COG0243
COG function: function code C; Anaerobic dehydrogenases, typically selenocysteine-containing
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the prokaryotic molybdopterin-containing oxidoreductase family [H]
Homologues:
Organism=Escherichia coli, GI3868720, Length=822, Percent_Identity=63.3819951338199, Blast_Score=1098, Evalue=0.0, Organism=Escherichia coli, GI3868719, Length=820, Percent_Identity=61.0975609756098, Blast_Score=1074, Evalue=0.0, Organism=Escherichia coli, GI3868721, Length=462, Percent_Identity=25.1082251082251, Blast_Score=122, Evalue=7e-29, Organism=Escherichia coli, GI87081797, Length=250, Percent_Identity=29.2, Blast_Score=88, Evalue=3e-18, Organism=Escherichia coli, GI1787870, Length=235, Percent_Identity=30.6382978723404, Blast_Score=81, Evalue=3e-16, Organism=Escherichia coli, GI171474008, Length=253, Percent_Identity=28.4584980237154, Blast_Score=76, Evalue=9e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009010 - InterPro: IPR006443 - InterPro: IPR006657 - InterPro: IPR006656 - InterPro: IPR006963 - InterPro: IPR006655 - InterPro: IPR006311 [H]
Pfam domain/function: PF04879 Molybdop_Fe4S4; PF00384 Molybdopterin; PF01568 Molydop_binding [H]
EC number: =1.2.1.2 [H]
Molecular weight: Translated: 91253; Mature: 91122
Theoretical pI: Translated: 6.98; Mature: 6.98
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASLAPTYGRGAMTNTWTDIANANLILVMGGNAAEAHPCGFKWVTEAKAHNAARLIVVDP CCCCCCCCCCCCCCCCHHHHCCCCEEEEECCCCCCCCCCCCEEEEHHCCCCCEEEEEECC RFTRTASVADYYAPIRTGSDIAFMGGLINYLLTEDKIQHEYVRNYTDVSFIVRAGFGFED CCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCC GLFTGYDAAKRSYTDKSTWGYELGEDGFVKVDPTLQDPRCVYQLMKQHYSRYNIDLASQI CCCCCCHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCHHHHH CGMPVDAMKKIWEEIATCSAPGKTMTILYALGWTQHSIGSQIIRSAAMVQLLLGNVGMPG HCCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCC GGVNALRGHSNIQGLTDLGLLSNALPGYLTLPTDAEQDYAAFIHKRTQVPLRPGQLSYWQ CCCHHHCCCCCCCCHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCCHHHH NYSKFHVSLMKAWYGANATAENQWAYHYLPKLDIPNYDILKVFDLMGQGKVNGYMCQGFN HHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCCCCEEECCCC PIAALPDKNRVMAALAKLKWLVVMDPLATETSQFWEHVGPFNDVKSADIQTEVIRLPTTC CCCCCCCCHHHHHHHHHHEEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCE FAEEDGSLVNSSRWLQWHWKGADGPGEARTDVQIMSALFLRLRERYQAEGGKFADPLLKL ECCCCCCEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHEE SWPYKIAEEPSPEEIAKEVNGYATTDFTDATGAAIKGNSQLAGFAQLKDDGSTASGCWIF CCCEECCCCCCHHHHHHHHCCCEECCCCCCCCCEEECCCCCCEEEEECCCCCCCCCEEEE CGSWTEAGNQMARRDNNDPYGMHQHQGWAWAWPANRRILYNRASADVAGKPWDPKKRLVW ECCHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCEEEEECCCCCCCCCCCCCCCCEEE WNGKAWGGTDVPDYKADVPPEAGMNPFIMNPEGVARFFAVDKMNEGPFPEHYEPFETPIG ECCCCCCCCCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC INPLHPDNKKATSNPAARIFDSVWDSLGVAKDYPYAATSYRLTEHFHFWSKHCKLNAIAQ CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEECCC PEQFVEIGEVLAKEKGIVAGDRVRVSSKRGFIEAVAVVTKRIRPLQVNNQVVHQIGIPLH HHHHHHHHHHHHHCCCCEECCEEEECCCCCHHHHHHHHHHCCCCEECCCHHHHHCCCEEE WGFTGLTRHGYLTNTLVPFLGDGNTQTPESKSFLVNVEKL ECCHHHCCCCCHHHCHHHEECCCCCCCCCCCEEEEEEECC >Mature Secondary Structure ASLAPTYGRGAMTNTWTDIANANLILVMGGNAAEAHPCGFKWVTEAKAHNAARLIVVDP CCCCCCCCCCCCCCCHHHHCCCCEEEEECCCCCCCCCCCCEEEEHHCCCCCEEEEEECC RFTRTASVADYYAPIRTGSDIAFMGGLINYLLTEDKIQHEYVRNYTDVSFIVRAGFGFED CCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCC GLFTGYDAAKRSYTDKSTWGYELGEDGFVKVDPTLQDPRCVYQLMKQHYSRYNIDLASQI CCCCCCHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCHHHHH CGMPVDAMKKIWEEIATCSAPGKTMTILYALGWTQHSIGSQIIRSAAMVQLLLGNVGMPG HCCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCC GGVNALRGHSNIQGLTDLGLLSNALPGYLTLPTDAEQDYAAFIHKRTQVPLRPGQLSYWQ CCCHHHCCCCCCCCHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCCHHHH NYSKFHVSLMKAWYGANATAENQWAYHYLPKLDIPNYDILKVFDLMGQGKVNGYMCQGFN HHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCCCCEEECCCC PIAALPDKNRVMAALAKLKWLVVMDPLATETSQFWEHVGPFNDVKSADIQTEVIRLPTTC CCCCCCCCHHHHHHHHHHEEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCE FAEEDGSLVNSSRWLQWHWKGADGPGEARTDVQIMSALFLRLRERYQAEGGKFADPLLKL ECCCCCCEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHEE SWPYKIAEEPSPEEIAKEVNGYATTDFTDATGAAIKGNSQLAGFAQLKDDGSTASGCWIF CCCEECCCCCCHHHHHHHHCCCEECCCCCCCCCEEECCCCCCEEEEECCCCCCCCCEEEE CGSWTEAGNQMARRDNNDPYGMHQHQGWAWAWPANRRILYNRASADVAGKPWDPKKRLVW ECCHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCEEEEECCCCCCCCCCCCCCCCEEE WNGKAWGGTDVPDYKADVPPEAGMNPFIMNPEGVARFFAVDKMNEGPFPEHYEPFETPIG ECCCCCCCCCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC INPLHPDNKKATSNPAARIFDSVWDSLGVAKDYPYAATSYRLTEHFHFWSKHCKLNAIAQ CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEECCC PEQFVEIGEVLAKEKGIVAGDRVRVSSKRGFIEAVAVVTKRIRPLQVNNQVVHQIGIPLH HHHHHHHHHHHHHCCCCEECCEEEECCCCCHHHHHHHHHHCCCCEECCCHHHHHCCCEEE WGFTGLTRHGYLTNTLVPFLGDGNTQTPESKSFLVNVEKL ECCHHHCCCCCHHHCHHHEECCCCCCCCCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8346018; 9278503; 8522521 [H]