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The map label for this gene is yjcD [H]

Identifier: 77458897

GI number: 77458897

Start: 3071024

End: 3073498

Strand: Direct

Name: yjcD [H]

Synonym: Pfl01_2672

Alternate gene names: 77458897

Gene position: 3071024-3073498 (Clockwise)

Preceding gene: 77458895

Following gene: 77458899

Centisome position: 47.7

GC content: 59.88

Gene sequence:

>2475_bases
GTGGCGCAACACACCCCCGATCTTCCTCCCGAACTTCGCCCCCTGGCCGAGATGCCATGGTTCAAACGCCTGGCGGCGCG
TTTCCTTGGCCATGGTTTGACGCAACTGCGCGCCCAGCACCGGGCTTCGTGGTTGCACGGCCAGGCTGACGGCTTTCGCA
GCGGGCATACCGCCGGCGTGGATTACGGGTACAAGGAAGGCAAGGCTGACGGCCTGGAAGAGGGCCGCCAGGTGTTGTTG
ATCCGCGACAGTCGCAATACCGAGCATCGCCCGCCGGGTATCGATAATCACTTGTTCGACGACTGGCGTCTGCCGCTTAG
CGCAGAACTGAAGAAGCGCATGAAAGCCGATGTCGCGCGCCTGCTGCCAGCCCACGCCCAGCCAAGCGTGGCGCAATGGA
AAATGATTTTCAGCGATACCCCGTCAACCTCGGTGATTGCCGGCGCCGGAGCCGGCAAGTCCACCACGCTGGTGCTGCGG
ATCCTGCTGCTGACTCACTACCTGGGCTTCGAGCTCGATTCGATGACCGTGGTGACCTTCACCCGCGAGTCGCGCAAGGA
CTTCATCAACAAACTGATCGAACTGTTCGCATTGTGGGGCCGGGCACTGAGTCAAAAAGACGCGCGGGATCTGGTGCGCA
CCTTCCACTCGCGGATCTTGCCGATGGTTCGCAGCCTGCCGGGGTTCGAGCGCTTGCAGGCATTCGAAAACCTCAGCCAC
CGCGCGCCGGGTGCGGATGAAGACGTCGACAGCAATCCGTTCGATCTGCGCATCAACGACGCGCAGCGCCAGCAGCTCAA
CGCCTGTTACCACCGTCTCTACAAAGAAGACCCGCGCTTTGCGCAACTGATCCAGCCGCTGTCCCGGCACGCCTTGCAGC
TCAAGGAGCTGGAACGCGATCACCCGGACGTGCAAAAGCGCGTCGCTGTAACGGAGCTGGCGGCTCGCCGCGATGAAGAG
CTGTGCGACATGATCGAGGACATGTGGCTCCGCGCCGGTGCCTGGCCGATCAAGGGTATCGAACCGAGTCGCCAGGCATT
CGAAATCAATGGCGCATCTTTCCATGGGCACGGCTACATTCCGAGCCTGGACGCCTGGGTGGTATTGGGTTTCGACCCTC
GGGAAAACCCGCAGGTCTGCCGTCCCAACGCCAAGCTGACGGTGCGTGCAGAGTGGGCAGTCAAGCGCACCCTGTTTCAA
GCTTTCTGTCGTAAGCCACTGATTTGGCTGGATAGTTACGAATCGTCAAAACGTTTATTGGCCACGCTGGTAGGCGATGT
CAGCGCCGGTCCCGGCTTCGATTACAAGGTCAAGGGCGAGCTGGCGTCCTCGCCGTTGCTCGACTGTTTTGTCGCCGCCG
CCGGCTTCATCGAAAATCTGGGGCTGGATGTGCCGGACGCTGTTGGCCGCATGAGTTTCGCCAAGGATGATCCGGACCGG
TTTTTCTTCGAGGCTTTAAGTCTGTTCTGGCGCGCGCTGGAAGATCATCTGCTGGATCAGAAGCCGCCGGTCATGACCTA
CAACCGCATGTTTGCACTGTTCAGCGAGCACTCACCGGAAAACTTCAAACTGCTCAGTGATGAGCTGTTGCGGCCGATGT
CGCACCTGATGATCGATGAGTTTCAGGACGTTTCACCGCAGATCGTCTCGTGGATTCGCGCCAGCCTCTCGGAAATCCGC
AGTCGCGGCCCCGCGATGCACGTTGGACGAGGCGCACAGCGATCGTCGCTGCTTTGCGTAGGCGATGACTGGCAATCGAT
CTACGGCTGGCGCGGCAGTTCGCCGAGCTACTTCATGGAATTCAACAAGGAATTCCCGTCGCCGAGTACGACCCGGGTGA
TGCTCAGCGACAACTATCGCAGCCATCAGCACATCATCGACGCGGCGGAACACATCGTCCGGGCAGCGCCGGCGATCCCA
GGCAAGAAGGCCAAGGCCAGCGGCGAGGAGAGGCCGTTGCAGCCAGTCAACGTGCTGGAGCGCGACGATCAGGCACTCGG
CCAGCGCCTGTCGGAACACTATCGAAACGGCGATTCGATCCTGATGCTCTATCGAAAAAGCAGCGATAAGTTATTGATAG
AACAGCATATTCAGCATGTAGTTAATGTGGATTCGAGCTTGCCTTATGAGTCCCGTCGCCTGAAACAGCTGACCTATCAC
AGTGCCAAAGGTCTGCAGGCCGACGCGGTGTTCCTGCTGGGCGATTGCCAGCACCTGACCAGTTCGCCATACAAGAATCA
GGTGTATCGCATGGCCGGACTGGGCAAGGCCGGCGACAGCGAGCCTTATGACAGTGCGCAAAAAGACGAAATCCTGCGCC
TGGCCTACGTCGGCATCACTCGCGCAGTCAGCCATTGCTACTGGTACGTCGAGCCGCAAGACACCCAGGCAGTCAATATG
CCTCGGGCTTCGGACCGGGTTGCCAAAGGCAAACCGTTCTTCGTCGATCATCGTCCGGAAAAGAAAACGGCCTGA

Upstream 100 bases:

>100_bases
TTCATCGCCTAAACCAATGACCTGTAAGCATTTCGCTAGAACAAAAAAGCAAATGCAGACACCATAGCCCCCAACAGCCT
CACATCCGGAGTCCGTCAGC

Downstream 100 bases:

>100_bases
ATCCAATGCCCATGAAAAAGCCCGCACAAAGCGGGCTTTTTATTTTAAATCAGCTAGTTACGCATAACTCTTGAGGGATT
CAGGAGGAATGAATGCCTCC

Product: UvrD/REP helicase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 824; Mature: 823

Protein sequence:

>824_residues
MAQHTPDLPPELRPLAEMPWFKRLAARFLGHGLTQLRAQHRASWLHGQADGFRSGHTAGVDYGYKEGKADGLEEGRQVLL
IRDSRNTEHRPPGIDNHLFDDWRLPLSAELKKRMKADVARLLPAHAQPSVAQWKMIFSDTPSTSVIAGAGAGKSTTLVLR
ILLLTHYLGFELDSMTVVTFTRESRKDFINKLIELFALWGRALSQKDARDLVRTFHSRILPMVRSLPGFERLQAFENLSH
RAPGADEDVDSNPFDLRINDAQRQQLNACYHRLYKEDPRFAQLIQPLSRHALQLKELERDHPDVQKRVAVTELAARRDEE
LCDMIEDMWLRAGAWPIKGIEPSRQAFEINGASFHGHGYIPSLDAWVVLGFDPRENPQVCRPNAKLTVRAEWAVKRTLFQ
AFCRKPLIWLDSYESSKRLLATLVGDVSAGPGFDYKVKGELASSPLLDCFVAAAGFIENLGLDVPDAVGRMSFAKDDPDR
FFFEALSLFWRALEDHLLDQKPPVMTYNRMFALFSEHSPENFKLLSDELLRPMSHLMIDEFQDVSPQIVSWIRASLSEIR
SRGPAMHVGRGAQRSSLLCVGDDWQSIYGWRGSSPSYFMEFNKEFPSPSTTRVMLSDNYRSHQHIIDAAEHIVRAAPAIP
GKKAKASGEERPLQPVNVLERDDQALGQRLSEHYRNGDSILMLYRKSSDKLLIEQHIQHVVNVDSSLPYESRRLKQLTYH
SAKGLQADAVFLLGDCQHLTSSPYKNQVYRMAGLGKAGDSEPYDSAQKDEILRLAYVGITRAVSHCYWYVEPQDTQAVNM
PRASDRVAKGKPFFVDHRPEKKTA

Sequences:

>Translated_824_residues
MAQHTPDLPPELRPLAEMPWFKRLAARFLGHGLTQLRAQHRASWLHGQADGFRSGHTAGVDYGYKEGKADGLEEGRQVLL
IRDSRNTEHRPPGIDNHLFDDWRLPLSAELKKRMKADVARLLPAHAQPSVAQWKMIFSDTPSTSVIAGAGAGKSTTLVLR
ILLLTHYLGFELDSMTVVTFTRESRKDFINKLIELFALWGRALSQKDARDLVRTFHSRILPMVRSLPGFERLQAFENLSH
RAPGADEDVDSNPFDLRINDAQRQQLNACYHRLYKEDPRFAQLIQPLSRHALQLKELERDHPDVQKRVAVTELAARRDEE
LCDMIEDMWLRAGAWPIKGIEPSRQAFEINGASFHGHGYIPSLDAWVVLGFDPRENPQVCRPNAKLTVRAEWAVKRTLFQ
AFCRKPLIWLDSYESSKRLLATLVGDVSAGPGFDYKVKGELASSPLLDCFVAAAGFIENLGLDVPDAVGRMSFAKDDPDR
FFFEALSLFWRALEDHLLDQKPPVMTYNRMFALFSEHSPENFKLLSDELLRPMSHLMIDEFQDVSPQIVSWIRASLSEIR
SRGPAMHVGRGAQRSSLLCVGDDWQSIYGWRGSSPSYFMEFNKEFPSPSTTRVMLSDNYRSHQHIIDAAEHIVRAAPAIP
GKKAKASGEERPLQPVNVLERDDQALGQRLSEHYRNGDSILMLYRKSSDKLLIEQHIQHVVNVDSSLPYESRRLKQLTYH
SAKGLQADAVFLLGDCQHLTSSPYKNQVYRMAGLGKAGDSEPYDSAQKDEILRLAYVGITRAVSHCYWYVEPQDTQAVNM
PRASDRVAKGKPFFVDHRPEKKTA
>Mature_823_residues
AQHTPDLPPELRPLAEMPWFKRLAARFLGHGLTQLRAQHRASWLHGQADGFRSGHTAGVDYGYKEGKADGLEEGRQVLLI
RDSRNTEHRPPGIDNHLFDDWRLPLSAELKKRMKADVARLLPAHAQPSVAQWKMIFSDTPSTSVIAGAGAGKSTTLVLRI
LLLTHYLGFELDSMTVVTFTRESRKDFINKLIELFALWGRALSQKDARDLVRTFHSRILPMVRSLPGFERLQAFENLSHR
APGADEDVDSNPFDLRINDAQRQQLNACYHRLYKEDPRFAQLIQPLSRHALQLKELERDHPDVQKRVAVTELAARRDEEL
CDMIEDMWLRAGAWPIKGIEPSRQAFEINGASFHGHGYIPSLDAWVVLGFDPRENPQVCRPNAKLTVRAEWAVKRTLFQA
FCRKPLIWLDSYESSKRLLATLVGDVSAGPGFDYKVKGELASSPLLDCFVAAAGFIENLGLDVPDAVGRMSFAKDDPDRF
FFEALSLFWRALEDHLLDQKPPVMTYNRMFALFSEHSPENFKLLSDELLRPMSHLMIDEFQDVSPQIVSWIRASLSEIRS
RGPAMHVGRGAQRSSLLCVGDDWQSIYGWRGSSPSYFMEFNKEFPSPSTTRVMLSDNYRSHQHIIDAAEHIVRAAPAIPG
KKAKASGEERPLQPVNVLERDDQALGQRLSEHYRNGDSILMLYRKSSDKLLIEQHIQHVVNVDSSLPYESRRLKQLTYHS
AKGLQADAVFLLGDCQHLTSSPYKNQVYRMAGLGKAGDSEPYDSAQKDEILRLAYVGITRAVSHCYWYVEPQDTQAVNMP
RASDRVAKGKPFFVDHRPEKKTA

Specific function: May be involved in the generation of recombinogenic substrates for the subsequent action of recA [H]

COG id: COG0210

COG function: function code L; Superfamily I DNA and RNA helicases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 uvrD-like helicase C-terminal domain [H]

Homologues:

Organism=Escherichia coli, GI2367296, Length=182, Percent_Identity=27.4725274725275, Blast_Score=70, Evalue=7e-13,
Organism=Escherichia coli, GI1787196, Length=264, Percent_Identity=25.7575757575758, Blast_Score=70, Evalue=7e-13,

Paralogues:

None

Copy number: 3000 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014017
- InterPro:   IPR000212
- InterPro:   IPR014016 [H]

Pfam domain/function: PF00580 UvrD-helicase [H]

EC number: =3.6.4.12 [H]

Molecular weight: Translated: 93459; Mature: 93328

Theoretical pI: Translated: 7.93; Mature: 7.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQHTPDLPPELRPLAEMPWFKRLAARFLGHGLTQLRAQHRASWLHGQADGFRSGHTAGV
CCCCCCCCCCCCCHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
DYGYKEGKADGLEEGRQVLLIRDSRNTEHRPPGIDNHLFDDWRLPLSAELKKRMKADVAR
CCCCCCCCCCCHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
LLPAHAQPSVAQWKMIFSDTPSTSVIAGAGAGKSTTLVLRILLLTHYLGFELDSMTVVTF
HCCCCCCCCHHHEEEEECCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEE
TRESRKDFINKLIELFALWGRALSQKDARDLVRTFHSRILPMVRSLPGFERLQAFENLSH
CHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
RAPGADEDVDSNPFDLRINDAQRQQLNACYHRLYKEDPRFAQLIQPLSRHALQLKELERD
CCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCC
HPDVQKRVAVTELAARRDEELCDMIEDMWLRAGAWPIKGIEPSRQAFEINGASFHGHGYI
CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCEEECCCCC
PSLDAWVVLGFDPRENPQVCRPNAKLTVRAEWAVKRTLFQAFCRKPLIWLDSYESSKRLL
CCCCCEEEEECCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCEEEECCCCCHHHHH
ATLVGDVSAGPGFDYKVKGELASSPLLDCFVAAAGFIENLGLDVPDAVGRMSFAKDDPDR
HHHHHCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCHHH
FFFEALSLFWRALEDHLLDQKPPVMTYNRMFALFSEHSPENFKLLSDELLRPMSHLMIDE
HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
FQDVSPQIVSWIRASLSEIRSRGPAMHVGRGAQRSSLLCVGDDWQSIYGWRGSSPSYFME
HHCCCHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCEEEECCCHHHHCCCCCCCCHHHHH
FNKEFPSPSTTRVMLSDNYRSHQHIIDAAEHIVRAAPAIPGKKAKASGEERPLQPVNVLE
HCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
RDDQALGQRLSEHYRNGDSILMLYRKSSDKLLIEQHIQHVVNVDSSLPYESRRLKQLTYH
CCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
SAKGLQADAVFLLGDCQHLTSSPYKNQVYRMAGLGKAGDSEPYDSAQKDEILRLAYVGIT
HCCCCCCCEEEEEECCHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH
RAVSHCYWYVEPQDTQAVNMPRASDRVAKGKPFFVDHRPEKKTA
HHHHHHEEEECCCCCCEECCCCCCCHHCCCCCEEECCCCCCCCC
>Mature Secondary Structure 
AQHTPDLPPELRPLAEMPWFKRLAARFLGHGLTQLRAQHRASWLHGQADGFRSGHTAGV
CCCCCCCCCCCCHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
DYGYKEGKADGLEEGRQVLLIRDSRNTEHRPPGIDNHLFDDWRLPLSAELKKRMKADVAR
CCCCCCCCCCCHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
LLPAHAQPSVAQWKMIFSDTPSTSVIAGAGAGKSTTLVLRILLLTHYLGFELDSMTVVTF
HCCCCCCCCHHHEEEEECCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEE
TRESRKDFINKLIELFALWGRALSQKDARDLVRTFHSRILPMVRSLPGFERLQAFENLSH
CHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
RAPGADEDVDSNPFDLRINDAQRQQLNACYHRLYKEDPRFAQLIQPLSRHALQLKELERD
CCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCC
HPDVQKRVAVTELAARRDEELCDMIEDMWLRAGAWPIKGIEPSRQAFEINGASFHGHGYI
CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCEEECCCCC
PSLDAWVVLGFDPRENPQVCRPNAKLTVRAEWAVKRTLFQAFCRKPLIWLDSYESSKRLL
CCCCCEEEEECCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCEEEECCCCCHHHHH
ATLVGDVSAGPGFDYKVKGELASSPLLDCFVAAAGFIENLGLDVPDAVGRMSFAKDDPDR
HHHHHCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCHHH
FFFEALSLFWRALEDHLLDQKPPVMTYNRMFALFSEHSPENFKLLSDELLRPMSHLMIDE
HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
FQDVSPQIVSWIRASLSEIRSRGPAMHVGRGAQRSSLLCVGDDWQSIYGWRGSSPSYFME
HHCCCHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCEEEECCCHHHHCCCCCCCCHHHHH
FNKEFPSPSTTRVMLSDNYRSHQHIIDAAEHIVRAAPAIPGKKAKASGEERPLQPVNVLE
HCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
RDDQALGQRLSEHYRNGDSILMLYRKSSDKLLIEQHIQHVVNVDSSLPYESRRLKQLTYH
CCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
SAKGLQADAVFLLGDCQHLTSSPYKNQVYRMAGLGKAGDSEPYDSAQKDEILRLAYVGIT
HCCCCCCCEEEEEECCHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH
RAVSHCYWYVEPQDTQAVNMPRASDRVAKGKPFFVDHRPEKKTA
HHHHHHEEEECCCCCCEECCCCCCCHHCCCCCEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]