| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is 77458720
Identifier: 77458720
GI number: 77458720
Start: 2853054
End: 2854337
Strand: Direct
Name: 77458720
Synonym: Pfl01_2495
Alternate gene names: NA
Gene position: 2853054-2854337 (Clockwise)
Preceding gene: 77458719
Following gene: 77458721
Centisome position: 44.31
GC content: 60.36
Gene sequence:
>1284_bases ATGGCGGTCAATCGACGTAATTTCGTGCTCGGAACTTTGGGTGTTGGCGCTTTGCTGGTGGGCGTGGGTGCGTTGTTAAG GCCGGGGGATCGCGGCGGGCCTTACAGTGACTATTTTCGGGCGCTGAACAACGAACTCAAGACCAAAGGCCCGATGCGCC CGGTGTTGCTGATCGATCTGGATCGGCTGGATCACAACATCGACGTGGTGATGCGCTCGGTCAAACGCGCGGGCAAGCAG TTGCGGCTGGTAGAGAAGTCATTGCCATCGCCGGGCTTGCTCCGCTACATCGGCCAACGGGCGGGGACGCAGCGGCTGAT GTCGTTCCATCAGCCGTTTCTCAATCACGATGCGGTGACGTTTCCGCAGTCCGACATTCTGCTCGGCAAACCGCTGCCGG TGCGCTCGGCCGAGATTTTCTACCAGACTCACAAAGGCCCCTTCGACCCGACGAAACAACTGCAATGGCTGATCGACAAC CCCGAACGCTTGCAGCAATACCTCGCACTGGCCCAGGGATTTGGCACGCGGATGCGGATCAACATCGAGCTGGACGTCGG CCTGCATCGAGGCGGCGTCAGTGACGTGAACGTGCTCGGGCAGATGCTCGCGCTGATCGCCGCCAACCCGCAGCATCTGG CGTTCGCCGGCTTCATGGGCTACGACCCGTTCGTGGGCATGGGCGTGCCGGGGATTCTCGGTTCGCCCGAGGAACTGTTC GCCAAGGTGATGGTGATTTATCAGCGCTGCGTCGACTTCACCCGGCAGCAATATCCGGCGCTGTGGCATGACGGCTTGTG CCTGAATACGGCCGGCAGCCCGAGTTATCGCATGCATGAAAACGAACACCTGAGCAGTGAGGTGTCGGTGGGGACGGCGA TGCTCAAGCCGACTCATTACGATCTGCCGTCGCTGGTCGAACATGAACCTGCCGCGTACATCGCCACGCCGGTGTTGAAA AGCACGGGTGCGGTGAACATCCCGGCGCTGGATGACAAGTCGAAACTGTTTTCGTGGTGGGACACCAACCAGCGCCAGAC CTTCTTCATCTACGGTGGCAACTGGATGGCCGAATTCGAATCGCCGCCCGGATTGCAGAGCAATGGTGTTTACGGCCGTA GCTCGAATCAGGAGATGGTCAATGGCTCGAATGCCGTGGGGCTGACGGTGGAGGATCAGGTGTTCTTGCGCCCGACCCAG ACCGAAGCCGTCCTTCTGCAATTCGGCGACTTGCTGGCGGTGCGTGGCGGCAAGATCGTCGATACCTGGCCGGTGTATAC CTGA
Upstream 100 bases:
>100_bases TCTATCCGCGCTGGCAGGAATTCATTCAGGTACGCCAGGCGGTGGACCCGAGCGGCAAGTTTCTCAACGGGCATCTGTCG TCGATTCTGGGGGTGAGCTG
Downstream 100 bases:
>100_bases TCTGCTGACTTCTTCAACACAACGCAAAACCTTCAGCAATTTCCGTAATGAAGCTTTTATGACAAAAGTTCGGTAGCACA TCGCCAGTCCGGTCATGCCT
Product: alanine racemase-like
Products: NA
Alternate protein names: Alanine Racemase-Like; Alanine Racemase Domain Protein; Alanine Racemase N-Terminal Domain Family
Number of amino acids: Translated: 427; Mature: 426
Protein sequence:
>427_residues MAVNRRNFVLGTLGVGALLVGVGALLRPGDRGGPYSDYFRALNNELKTKGPMRPVLLIDLDRLDHNIDVVMRSVKRAGKQ LRLVEKSLPSPGLLRYIGQRAGTQRLMSFHQPFLNHDAVTFPQSDILLGKPLPVRSAEIFYQTHKGPFDPTKQLQWLIDN PERLQQYLALAQGFGTRMRINIELDVGLHRGGVSDVNVLGQMLALIAANPQHLAFAGFMGYDPFVGMGVPGILGSPEELF AKVMVIYQRCVDFTRQQYPALWHDGLCLNTAGSPSYRMHENEHLSSEVSVGTAMLKPTHYDLPSLVEHEPAAYIATPVLK STGAVNIPALDDKSKLFSWWDTNQRQTFFIYGGNWMAEFESPPGLQSNGVYGRSSNQEMVNGSNAVGLTVEDQVFLRPTQ TEAVLLQFGDLLAVRGGKIVDTWPVYT
Sequences:
>Translated_427_residues MAVNRRNFVLGTLGVGALLVGVGALLRPGDRGGPYSDYFRALNNELKTKGPMRPVLLIDLDRLDHNIDVVMRSVKRAGKQ LRLVEKSLPSPGLLRYIGQRAGTQRLMSFHQPFLNHDAVTFPQSDILLGKPLPVRSAEIFYQTHKGPFDPTKQLQWLIDN PERLQQYLALAQGFGTRMRINIELDVGLHRGGVSDVNVLGQMLALIAANPQHLAFAGFMGYDPFVGMGVPGILGSPEELF AKVMVIYQRCVDFTRQQYPALWHDGLCLNTAGSPSYRMHENEHLSSEVSVGTAMLKPTHYDLPSLVEHEPAAYIATPVLK STGAVNIPALDDKSKLFSWWDTNQRQTFFIYGGNWMAEFESPPGLQSNGVYGRSSNQEMVNGSNAVGLTVEDQVFLRPTQ TEAVLLQFGDLLAVRGGKIVDTWPVYT >Mature_426_residues AVNRRNFVLGTLGVGALLVGVGALLRPGDRGGPYSDYFRALNNELKTKGPMRPVLLIDLDRLDHNIDVVMRSVKRAGKQL RLVEKSLPSPGLLRYIGQRAGTQRLMSFHQPFLNHDAVTFPQSDILLGKPLPVRSAEIFYQTHKGPFDPTKQLQWLIDNP ERLQQYLALAQGFGTRMRINIELDVGLHRGGVSDVNVLGQMLALIAANPQHLAFAGFMGYDPFVGMGVPGILGSPEELFA KVMVIYQRCVDFTRQQYPALWHDGLCLNTAGSPSYRMHENEHLSSEVSVGTAMLKPTHYDLPSLVEHEPAAYIATPVLKS TGAVNIPALDDKSKLFSWWDTNQRQTFFIYGGNWMAEFESPPGLQSNGVYGRSSNQEMVNGSNAVGLTVEDQVFLRPTQT EAVLLQFGDLLAVRGGKIVDTWPVYT
Specific function: Unknown
COG id: COG3616
COG function: function code E; Predicted amino acid aldolase or racemase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47303; Mature: 47172
Theoretical pI: Translated: 7.79; Mature: 7.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVNRRNFVLGTLGVGALLVGVGALLRPGDRGGPYSDYFRALNNELKTKGPMRPVLLIDL CCCCCCCEEEEHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEH DRLDHNIDVVMRSVKRAGKQLRLVEKSLPSPGLLRYIGQRAGTQRLMSFHQPFLNHDAVT HHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEE FPQSDILLGKPLPVRSAEIFYQTHKGPFDPTKQLQWLIDNPERLQQYLALAQGFGTRMRI CCCCCEEECCCCCCCCCEEEEEECCCCCCHHHHHHEEECCHHHHHHHHHHHHCCCCEEEE NIELDVGLHRGGVSDVNVLGQMLALIAANPQHLAFAGFMGYDPFVGMGVPGILGSPEELF EEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHH AKVMVIYQRCVDFTRQQYPALWHDGLCLNTAGSPSYRMHENEHLSSEVSVGTAMLKPTHY HHHHHHHHHHHHHHHHHCCCHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCEEECCCCC DLPSLVEHEPAAYIATPVLKSTGAVNIPALDDKSKLFSWWDTNQRQTFFIYGGNWMAEFE CCHHHHCCCCCHHHHHHHHHCCCCEECCCCCCHHHHEEEECCCCCEEEEEECCCEEEECC SPPGLQSNGVYGRSSNQEMVNGSNAVGLTVEDQVFLRPTQTEAVLLQFGDLLAVRGGKIV CCCCCCCCCCCCCCCCCHHHCCCCEEEEEECCCEEECCCCHHHHHHHHCCEEEECCCEEE DTWPVYT ECCCCCC >Mature Secondary Structure AVNRRNFVLGTLGVGALLVGVGALLRPGDRGGPYSDYFRALNNELKTKGPMRPVLLIDL CCCCCCEEEEHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEH DRLDHNIDVVMRSVKRAGKQLRLVEKSLPSPGLLRYIGQRAGTQRLMSFHQPFLNHDAVT HHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEE FPQSDILLGKPLPVRSAEIFYQTHKGPFDPTKQLQWLIDNPERLQQYLALAQGFGTRMRI CCCCCEEECCCCCCCCCEEEEEECCCCCCHHHHHHEEECCHHHHHHHHHHHHCCCCEEEE NIELDVGLHRGGVSDVNVLGQMLALIAANPQHLAFAGFMGYDPFVGMGVPGILGSPEELF EEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHH AKVMVIYQRCVDFTRQQYPALWHDGLCLNTAGSPSYRMHENEHLSSEVSVGTAMLKPTHY HHHHHHHHHHHHHHHHHCCCHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCEEECCCCC DLPSLVEHEPAAYIATPVLKSTGAVNIPALDDKSKLFSWWDTNQRQTFFIYGGNWMAEFE CCHHHHCCCCCHHHHHHHHHCCCCEECCCCCCHHHHEEEECCCCCEEEEEECCCEEEECC SPPGLQSNGVYGRSSNQEMVNGSNAVGLTVEDQVFLRPTQTEAVLLQFGDLLAVRGGKIV CCCCCCCCCCCCCCCCCHHHCCCCEEEEEECCCEEECCCCHHHHHHHHCCEEEECCCEEE DTWPVYT ECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA