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The map label for this gene is yjcR [C]

Identifier: 77458709

GI number: 77458709

Start: 2839878

End: 2840987

Strand: Direct

Name: yjcR [C]

Synonym: Pfl01_2484

Alternate gene names: 77458709

Gene position: 2839878-2840987 (Clockwise)

Preceding gene: 77458707

Following gene: 77458710

Centisome position: 44.11

GC content: 64.68

Gene sequence:

>1110_bases
ATGCGCCGGCTCCGATCTTTCCCCATTGCCGCATGTCTGTTGCCACTCGCTCTGGTGGCGTGCGGTGATTCTTCCTCCGT
AGTCGATCCGCGTACTCAAGCGCCTTTGGTCCGGGCCACCGCCGTTCAGTCAGCGGCCGACGGTTCCCGATCTTTTACGG
GGGTGGTGACGGCGCGCATTCAGAGCGACCTGGGCTTTCGCGTATCGGGCAAGCTGCTCGAACGTCTGGTGGACACGGGG
CAGACCGTCAAACGCGGTCAGCCGCTGATGCGGCTTGATCCCATCGACTTGGGGTTGCAGGCGCGCGCGCAACAGGAGTC
GGTCACCGCCGCCCGGGCCCGGGCCAGGCAGACAGCCGATGACGAAGCCCGCTATCGCACTCTGGTCAGCGCGGGCGCCA
TTTCCGCATCGGCCTACGATCAGATCAGAGCCGCCGCAGATACCGCCAAGGCGCAACTAAGCGCTGCTGAAGCGCAAGCG
GACGTAGCCCGCAACGCTTCCGGTTATGCGGTGCTGGTCGCCGATGCCGACGGCGTTGTGGTGGAAATACTCGCCGAACC
CGGACAAGTCGTCAGCCCTGGACAACCGGTGGTTCGACTGGCGCGGGCAGGGCAGCGCGAGGCCATCGTGCACTTGCCCG
AGACGTTGCGTCCCGCAGCAGGATCCACCGCGCAAGCCACGCTCTATGGTGATGCCTCGGGTGCTGTGACCGCGAAACTG
AGGTTGCTTTCGGATTCGGCGGACCGCACGACGCGTACGTTCGAGGCCCGCTATGTACTGGAAGGCGCGCTGGCCAATGC
GCCGATAGGTTCGACAGTCACCCTTAGAATCGCCGAGGGCTCGACACCTGCCGCGTCGTTGCAAGTGCCCATAGCCGCAC
TCTACGACGCCGGTAAAGGTCCTGGCGTGTGGGTCATCGCCGGGACACCGCCAACCGTGACCTGGCGTCCGGTTAAGGTG
CTGGGTTTGAGCGATGATCTGGCGCGCGTGGCTGGCGATCTCCGGGTCGGCGAACAGATTGTGGCGCTGGGCGCTCATCT
ATTGCACGAAGGTGAACCCGTAAGAATGCCTGTGCCTGAAGCGGCCACCGTTGCCGGGAGTCGTCCATGA

Upstream 100 bases:

>100_bases
TGATTGGTAAAGCTCGGCAGGGCCTACGTGAAGTGACTATTGACGGTAATGGTCACAGGTATGAGAATATGATGATCATC
CTATTTCAGTAAGGGAACCT

Downstream 100 bases:

>100_bases
GCGAAGGACGATTCAACCTTTCCGCCATCGCCGTTCGCGAGCGGGCGATCACGGTCTTTCTGATTTTCCTGATTGCCGTT
GCCGGCACCCTGGCGTTCTT

Product: secretion protein HlyD

Products: NA

Alternate protein names: Efflux Transporter RND Family MFP Subunit; Secretion Protein HlyD; RND Efflux Membrane Fusion Protein; Component Of Multidrug Efflux System; HlyD Family Secretion Protein; Transport/Efflux Transmembrane Protein; Membrane-Fusion Protein; RND Family Mulitdrug Efflux Protein; Efflux Protein; Protein Secretion Protein; Cation/Multidrug Efflux System Mebrane-Fusion Component; Multidrug Efflux Transporter Protein; Multidrug RND Transporter Membrane Fusion Protein; HlyD Family Protein Secretion Protein; Membrane Fusion Protein; Multidrug Efflux Protein; Membrane Efflux Protein; Lipoprotein; Acriflavin Resistance Protein A; Component Of Multidrug Efflux Protein; Multidrug Efflux; RND Membrane Fusion Protein; Efflux System Protein; Efflux Transmembrane Protein; HlyD-Family Secretion Protein; Component Of Multidrug Efflux System Protein; Auxiliary Transport Protein MFP Family; Efflux Transporter; Protein Secretion Protein HlyD Family; Secretion Protein; Periplasmic Multidrug Efflux Lipoprotein; Acriflavin Resistance Periplasmic Protein; Efflux Transporter Rnd Family Mfp Subunit; RND Superfamily Transporter Membrane- Fusion Protein; RND Family Efflux Transporter; RND/Acr Family Transmembrane Transporter

Number of amino acids: Translated: 369; Mature: 369

Protein sequence:

>369_residues
MRRLRSFPIAACLLPLALVACGDSSSVVDPRTQAPLVRATAVQSAADGSRSFTGVVTARIQSDLGFRVSGKLLERLVDTG
QTVKRGQPLMRLDPIDLGLQARAQQESVTAARARARQTADDEARYRTLVSAGAISASAYDQIRAAADTAKAQLSAAEAQA
DVARNASGYAVLVADADGVVVEILAEPGQVVSPGQPVVRLARAGQREAIVHLPETLRPAAGSTAQATLYGDASGAVTAKL
RLLSDSADRTTRTFEARYVLEGALANAPIGSTVTLRIAEGSTPAASLQVPIAALYDAGKGPGVWVIAGTPPTVTWRPVKV
LGLSDDLARVAGDLRVGEQIVALGAHLLHEGEPVRMPVPEAATVAGSRP

Sequences:

>Translated_369_residues
MRRLRSFPIAACLLPLALVACGDSSSVVDPRTQAPLVRATAVQSAADGSRSFTGVVTARIQSDLGFRVSGKLLERLVDTG
QTVKRGQPLMRLDPIDLGLQARAQQESVTAARARARQTADDEARYRTLVSAGAISASAYDQIRAAADTAKAQLSAAEAQA
DVARNASGYAVLVADADGVVVEILAEPGQVVSPGQPVVRLARAGQREAIVHLPETLRPAAGSTAQATLYGDASGAVTAKL
RLLSDSADRTTRTFEARYVLEGALANAPIGSTVTLRIAEGSTPAASLQVPIAALYDAGKGPGVWVIAGTPPTVTWRPVKV
LGLSDDLARVAGDLRVGEQIVALGAHLLHEGEPVRMPVPEAATVAGSRP
>Mature_369_residues
MRRLRSFPIAACLLPLALVACGDSSSVVDPRTQAPLVRATAVQSAADGSRSFTGVVTARIQSDLGFRVSGKLLERLVDTG
QTVKRGQPLMRLDPIDLGLQARAQQESVTAARARARQTADDEARYRTLVSAGAISASAYDQIRAAADTAKAQLSAAEAQA
DVARNASGYAVLVADADGVVVEILAEPGQVVSPGQPVVRLARAGQREAIVHLPETLRPAAGSTAQATLYGDASGAVTAKL
RLLSDSADRTTRTFEARYVLEGALANAPIGSTVTLRIAEGSTPAASLQVPIAALYDAGKGPGVWVIAGTPPTVTWRPVKV
LGLSDDLARVAGDLRVGEQIVALGAHLLHEGEPVRMPVPEAATVAGSRP

Specific function: Unknown

COG id: COG0845

COG function: function code M; Membrane-fusion protein

Gene ontology:

Cell location: Inner Membrane-Bound [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38236; Mature: 38236

Theoretical pI: Translated: 9.09; Mature: 9.09

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRLRSFPIAACLLPLALVACGDSSSVVDPRTQAPLVRATAVQSAADGSRSFTGVVTARI
CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEEEE
QSDLGFRVSGKLLERLVDTGQTVKRGQPLMRLDPIDLGLQARAQQESVTAARARARQTAD
CCCCCCEEHHHHHHHHHHCCCHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCC
DEARYRTLVSAGAISASAYDQIRAAADTAKAQLSAAEAQADVARNASGYAVLVADADGVV
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCEE
VEILAEPGQVVSPGQPVVRLARAGQREAIVHLPETLRPAAGSTAQATLYGDASGAVTAKL
EEEECCCCCCCCCCHHHHHHHHCCCCCEEEECCHHHCCCCCCCEEEEEEECCCCCEEEEE
RLLSDSADRTTRTFEARYVLEGALANAPIGSTVTLRIAEGSTPAASLQVPIAALYDAGKG
EEECCCCCCHHHEEEHHEEEEHHHCCCCCCCEEEEEEECCCCCCCEEECCHHHEECCCCC
PGVWVIAGTPPTVTWRPVKVLGLSDDLARVAGDLRVGEQIVALGAHLLHEGEPVRMPVPE
CCEEEEECCCCCCEECCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCC
AATVAGSRP
HHCCCCCCC
>Mature Secondary Structure
MRRLRSFPIAACLLPLALVACGDSSSVVDPRTQAPLVRATAVQSAADGSRSFTGVVTARI
CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEEEE
QSDLGFRVSGKLLERLVDTGQTVKRGQPLMRLDPIDLGLQARAQQESVTAARARARQTAD
CCCCCCEEHHHHHHHHHHCCCHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCC
DEARYRTLVSAGAISASAYDQIRAAADTAKAQLSAAEAQADVARNASGYAVLVADADGVV
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCEE
VEILAEPGQVVSPGQPVVRLARAGQREAIVHLPETLRPAAGSTAQATLYGDASGAVTAKL
EEEECCCCCCCCCCHHHHHHHHCCCCCEEEECCHHHCCCCCCCEEEEEEECCCCCEEEEE
RLLSDSADRTTRTFEARYVLEGALANAPIGSTVTLRIAEGSTPAASLQVPIAALYDAGKG
EEECCCCCCHHHEEEHHEEEEHHHCCCCCCCEEEEEEECCCCCCCEEECCHHHEECCCCC
PGVWVIAGTPPTVTWRPVKVLGLSDDLARVAGDLRVGEQIVALGAHLLHEGEPVRMPVPE
CCEEEEECCCCCCEECCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCC
AATVAGSRP
HHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA