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The map label for this gene is rpoE [H]

Identifier: 77457649

GI number: 77457649

Start: 1597839

End: 1598450

Strand: Direct

Name: rpoE [H]

Synonym: Pfl01_1422

Alternate gene names: 77457649

Gene position: 1597839-1598450 (Clockwise)

Preceding gene: 77457648

Following gene: 77457650

Centisome position: 24.82

GC content: 60.95

Gene sequence:

>612_bases
ATGGCAGTTGACGACACCCGATTGCTTGAGCGGCTGCTCGCCGGTGAGCAGAAGGCTTTCAAGGAGCTGGTCAGCACCTA
TCAAAGCCCCATGCGCGCGGTGGCCTACGCGATTGTCGGCCAGCGCCATGTCGAAGAAGTGGTGCAGGACGCCTGGCTGT
CGGTGGTGCGCAATATCGGCCGTTTCGAGGGGCGCTCCAGCCTCAAGACCTGGCTGCTGACCATCACCGCCAACTCGGCC
AAGAGCCGCTACAAACTCAATCGTCGCGAAGTGCTGCTGGATGATCTGCCGTCCCCCCACGGCACCATCGATGACGATCG
TTTTTCTCCCGGCGACGGCCACTGGCTGGTAGCACCGTTCGCCTGGCACCAGGACACACCCGAGGCATTGCTGACCGAAG
GCGAGCTGCGTGAATGCCTGGAGCATACGTTGCTCAGCCTCTCCGAACTTCAGAGCAGTGTGCTCACGCTGCGCGAGCGC
CAGGGCCTGGAGCTGGAGGAGATCTGTAATCTTCTGGAGATCTCGCTCTCCAATGTCCGCGTGCTGCTGCACAGGGCACG
TTTGAAGGTCTTTGCGACCGTGGAGCATTTTGAGGAGACGGGAGAATGTTGA

Upstream 100 bases:

>100_bases
TCCTACATCCGAATCGGCGCGAACGCTGTAATTTTCGAAAGTGGCGGCAGGCGAAGTCCTGCCGCTATCATTTTCGAAGT
CAGGAACAGGGGATTGATGG

Downstream 100 bases:

>100_bases
CCTGCAAGGAGCAAGTGGCGCGATCCAGCGATTATCTCGATGGCCAGTTGAGCTTTCGCGAAAAACTGATGGTGCGTCAT
CACCTGATGTTCTGCCGCAA

Product: sigma-24 (FecI)

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 203; Mature: 202

Protein sequence:

>203_residues
MAVDDTRLLERLLAGEQKAFKELVSTYQSPMRAVAYAIVGQRHVEEVVQDAWLSVVRNIGRFEGRSSLKTWLLTITANSA
KSRYKLNRREVLLDDLPSPHGTIDDDRFSPGDGHWLVAPFAWHQDTPEALLTEGELRECLEHTLLSLSELQSSVLTLRER
QGLELEEICNLLEISLSNVRVLLHRARLKVFATVEHFEETGEC

Sequences:

>Translated_203_residues
MAVDDTRLLERLLAGEQKAFKELVSTYQSPMRAVAYAIVGQRHVEEVVQDAWLSVVRNIGRFEGRSSLKTWLLTITANSA
KSRYKLNRREVLLDDLPSPHGTIDDDRFSPGDGHWLVAPFAWHQDTPEALLTEGELRECLEHTLLSLSELQSSVLTLRER
QGLELEEICNLLEISLSNVRVLLHRARLKVFATVEHFEETGEC
>Mature_202_residues
AVDDTRLLERLLAGEQKAFKELVSTYQSPMRAVAYAIVGQRHVEEVVQDAWLSVVRNIGRFEGRSSLKTWLLTITANSAK
SRYKLNRREVLLDDLPSPHGTIDDDRFSPGDGHWLVAPFAWHQDTPEALLTEGELRECLEHTLLSLSELQSSVLTLRERQ
GLELEEICNLLEISLSNVRVLLHRARLKVFATVEHFEETGEC

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=183, Percent_Identity=32.2404371584699, Blast_Score=83, Evalue=1e-17,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 23105; Mature: 22973

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVDDTRLLERLLAGEQKAFKELVSTYQSPMRAVAYAIVGQRHVEEVVQDAWLSVVRNIG
CCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RFEGRSSLKTWLLTITANSAKSRYKLNRREVLLDDLPSPHGTIDDDRFSPGDGHWLVAPF
HCCCHHHHHHHHHEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEE
AWHQDTPEALLTEGELRECLEHTLLSLSELQSSVLTLRERQGLELEEICNLLEISLSNVR
CCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
VLLHRARLKVFATVEHFEETGEC
HHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
AVDDTRLLERLLAGEQKAFKELVSTYQSPMRAVAYAIVGQRHVEEVVQDAWLSVVRNIG
CCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RFEGRSSLKTWLLTITANSAKSRYKLNRREVLLDDLPSPHGTIDDDRFSPGDGHWLVAPF
HCCCHHHHHHHHHEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEE
AWHQDTPEALLTEGELRECLEHTLLSLSELQSSVLTLRERQGLELEEICNLLEISLSNVR
CCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
VLLHRARLKVFATVEHFEETGEC
HHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]