Definition Pseudomonas fluorescens Pf0-1 chromosome, complete genome.
Accession NC_007492
Length 6,438,405

Click here to switch to the map view.

The map label for this gene is 77457611

Identifier: 77457611

GI number: 77457611

Start: 1557202

End: 1557567

Strand: Direct

Name: 77457611

Synonym: Pfl01_1384

Alternate gene names: NA

Gene position: 1557202-1557567 (Clockwise)

Preceding gene: 77457610

Following gene: 77457614

Centisome position: 24.19

GC content: 59.56

Gene sequence:

>366_bases
ATGCCGCACCTGCACCTGGAATACACCGCCAACCTGCCGCAACTGAACGCCGATGTTGCGTTGATCCGGCTCAACAACAC
CCTGGTGGGTTCCGGTCAATTCGGGGCGGAATTCGATATCAAGAGCCGTGCGTTCAAAGTTGAAACCTTCAAGGTCGGCA
CCGCCATGAACGAGCGCGCCTTTGTCGCGGTCAGGCTGGCGCTGCTCAGCGGGCGTTCCCCGGAAATCAAGAAGCAACTG
TCGCAGAGCCTGTTGGCGGTATTGCAGGAATTGTGCGAATGGCCGGCCGGGGTCGAGGTGCAGTTGAGTGTGGAACTGCT
CGACATCGACCGCGAGTCCTACAGCAAAGTCGCCATCGGCGTGTAG

Upstream 100 bases:

>100_bases
GCAATTCATGAGTGAGCGGCCGGTGATGTCGTCGCTGGAGTGAGTCAGGCATTGCTGTGTTATATGTACGACCTTTCCGC
CGAACCACTGGAGCACCGAG

Downstream 100 bases:

>100_bases
GACTCAGGCCGCTTCCAGCTCCGCGCAGGTCTTGATGACCTGCTCGCGCAACCAGAGGTTGGCGCTGTCCTGATCGACGT
TGTGGCTCCACTGCATGTCG

Product: 5-carboxymethyl-2-hydroxymuconate isomerase

Products: 5-carboxy-2-oxohept-3-enedioate

Alternate protein names: 5-Carboxymethyl-2-Hydroxymuconate Delta Isomerase; 5-Carboxymethyl-2-Hydroxymuconate Delta-Isomerase; Isomerase 5-Carboxymethyl-2-Hydroxymuconate Isomerase

Number of amino acids: Translated: 121; Mature: 120

Protein sequence:

>121_residues
MPHLHLEYTANLPQLNADVALIRLNNTLVGSGQFGAEFDIKSRAFKVETFKVGTAMNERAFVAVRLALLSGRSPEIKKQL
SQSLLAVLQELCEWPAGVEVQLSVELLDIDRESYSKVAIGV

Sequences:

>Translated_121_residues
MPHLHLEYTANLPQLNADVALIRLNNTLVGSGQFGAEFDIKSRAFKVETFKVGTAMNERAFVAVRLALLSGRSPEIKKQL
SQSLLAVLQELCEWPAGVEVQLSVELLDIDRESYSKVAIGV
>Mature_120_residues
PHLHLEYTANLPQLNADVALIRLNNTLVGSGQFGAEFDIKSRAFKVETFKVGTAMNERAFVAVRLALLSGRSPEIKKQLS
QSLLAVLQELCEWPAGVEVQLSVELLDIDRESYSKVAIGV

Specific function: Unknown

COG id: COG3232

COG function: function code E; 5-carboxymethyl-2-hydroxymuconate isomerase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 5.3.3.10

Molecular weight: Translated: 13325; Mature: 13193

Theoretical pI: Translated: 5.73; Mature: 5.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPHLHLEYTANLPQLNADVALIRLNNTLVGSGQFGAEFDIKSRAFKVETFKVGTAMNERA
CCCEEEEEECCCCCCCCCEEEEEECCEEEECCCCCCEECCCCCEEEEEEEEECCCCCCCH
FVAVRLALLSGRSPEIKKQLSQSLLAVLQELCEWPAGVEVQLSVELLDIDRESYSKVAIG
HHHHEEEHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCEEEEC
V
C
>Mature Secondary Structure 
PHLHLEYTANLPQLNADVALIRLNNTLVGSGQFGAEFDIKSRAFKVETFKVGTAMNERA
CCEEEEEECCCCCCCCCEEEEEECCEEEECCCCCCEECCCCCEEEEEEEEECCCCCCCH
FVAVRLALLSGRSPEIKKQLSQSLLAVLQELCEWPAGVEVQLSVELLDIDRESYSKVAIG
HHHHEEEHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCEEEEC
V
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: 5-carboxymethyl-2-hydroxymuconate

Specific reaction: 5-carboxymethyl-2-hydroxymuconate = 5-carboxy-2-oxohept-3-enedioate

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA