Definition Pseudomonas fluorescens Pf0-1 chromosome, complete genome.
Accession NC_007492
Length 6,438,405

Click here to switch to the map view.

The map label for this gene is 77457385

Identifier: 77457385

GI number: 77457385

Start: 1333315

End: 1334550

Strand: Direct

Name: 77457385

Synonym: Pfl01_1158

Alternate gene names: NA

Gene position: 1333315-1334550 (Clockwise)

Preceding gene: 77457384

Following gene: 77457386

Centisome position: 20.71

GC content: 62.06

Gene sequence:

>1236_bases
ATGAACTGGCGTGACCGTTTGTTGCCGGCATCCTTTCGCGGTGTCGGTTTCTGGATCGATCAGGCGAAAACCCCGGTCGG
TCGCAAGGGGCAGTTGCACGAGTATCCGCAACGGGATCTGCCGTTCTTCGAGGACCTTGGCCAGCAGGCCAAGACCCACG
ACCTGACGGCGTTCATCATCGGCGCCAATTGCCTGGAACAGCGCGACAAGCTGCTCCAGGCGCTGGAACAGGGCAGCGGC
GAACTGGTGCATCCGTGGTTGGGGCGCTTGCAGGTCAAGGTCGGTGAGTGCGACATGACTCACACCCGCCAGGACGGCGG
GATGGTGACGTTCAGCCTGAAGTTCTACCCCGACCGGCCGCTGCCGTTTCCGACGGCGACGGTCAGCACGCAGAAAGTGC
TGCTGGCCAAGGCCGACGGTTTGCTCGGCTCGGCGGTGGCGCGCTTCGAACAGGCGATGACCCTGATCAAGGCCGCGCGG
ATCGGCATCGCCAATCTGCGCAACAGCCTCACCGGTGTGTACGACGTGATCAAGGAGCAGCTCAAGCCGCTGATCGCGCA
GTACAAGCAGATCACCGAACTGGTCAGGGCCGTCAAGGAACTGCCCAAGGAAGTGGCGGCGGAGTTCAAGGGGTTGCTCG
GCGATATCAAGGAGCTGAAGGCATTCGCGAAGGAGGGCTACCGTGGCGTGATTGCCGACGTGTCCCAACAGATCGAAGCC
ATCCGCAAGGCCGATGCGCCGAAAATCACCACCGGCAAGGACACCAACGCCGCCGCGCAAGCGATGGCCAATCTGGTGCA
GGACACGCTGATCGTCAAAGTGGCGCAGTGGGTGGCCTCGATGCCGGTGGCGTCGACGCCGGTGAAACTCAACTCGACAC
CTTCGCTGGATCAGCAATCGAAGCAGCCGGTCAGCCGTCAGGAAGTTCCGGTCACCGACGATCTGCAAGCCCTGCAAAAA
GAGTTGAGCGACGCGCTGCAAAAGGCCCAGGACAAGGCCGACCCCGCGCACTATCAAGCCATCGCCGATGTGAAGGAGGC
GCTGATCGCGCACCTCAAGGCAGTGGCTTCGTCCGGTGTGCGACTGGTCAGCAAAACGTTCCAGGAAACCTTTCCGGCAG
TGGTCGTGGCCTACAAACAGTTTGGCGACGCCACCCGGGTGACCGAGGTCATTCAGCGCAACGGTCTGTCTCATCCGGGG
TACTCACCCAACGAAGTCAAGGTTTCCCGGGAGTGA

Upstream 100 bases:

>100_bases
GCGCCGGCGGGGCTGCGCACCGATCAACCGCAAACCAATCAGCCGGGGCTGGCGCTCAGTTCGCGCATCGGCTATCGCTC
GCTGTCCATGGGAGGTTCCA

Downstream 100 bases:

>100_bases
GCCATGAACGAGACTGACAACCGCGTCACGCTGACCGTCAACAACATGGAGTACGGCGGCTGGAAAAGCGTGCAGATCAC
CGCGGACCTGGAGCGTCAGT

Product: DNA circulation-like

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 411; Mature: 411

Protein sequence:

>411_residues
MNWRDRLLPASFRGVGFWIDQAKTPVGRKGQLHEYPQRDLPFFEDLGQQAKTHDLTAFIIGANCLEQRDKLLQALEQGSG
ELVHPWLGRLQVKVGECDMTHTRQDGGMVTFSLKFYPDRPLPFPTATVSTQKVLLAKADGLLGSAVARFEQAMTLIKAAR
IGIANLRNSLTGVYDVIKEQLKPLIAQYKQITELVRAVKELPKEVAAEFKGLLGDIKELKAFAKEGYRGVIADVSQQIEA
IRKADAPKITTGKDTNAAAQAMANLVQDTLIVKVAQWVASMPVASTPVKLNSTPSLDQQSKQPVSRQEVPVTDDLQALQK
ELSDALQKAQDKADPAHYQAIADVKEALIAHLKAVASSGVRLVSKTFQETFPAVVVAYKQFGDATRVTEVIQRNGLSHPG
YSPNEVKVSRE

Sequences:

>Translated_411_residues
MNWRDRLLPASFRGVGFWIDQAKTPVGRKGQLHEYPQRDLPFFEDLGQQAKTHDLTAFIIGANCLEQRDKLLQALEQGSG
ELVHPWLGRLQVKVGECDMTHTRQDGGMVTFSLKFYPDRPLPFPTATVSTQKVLLAKADGLLGSAVARFEQAMTLIKAAR
IGIANLRNSLTGVYDVIKEQLKPLIAQYKQITELVRAVKELPKEVAAEFKGLLGDIKELKAFAKEGYRGVIADVSQQIEA
IRKADAPKITTGKDTNAAAQAMANLVQDTLIVKVAQWVASMPVASTPVKLNSTPSLDQQSKQPVSRQEVPVTDDLQALQK
ELSDALQKAQDKADPAHYQAIADVKEALIAHLKAVASSGVRLVSKTFQETFPAVVVAYKQFGDATRVTEVIQRNGLSHPG
YSPNEVKVSRE
>Mature_411_residues
MNWRDRLLPASFRGVGFWIDQAKTPVGRKGQLHEYPQRDLPFFEDLGQQAKTHDLTAFIIGANCLEQRDKLLQALEQGSG
ELVHPWLGRLQVKVGECDMTHTRQDGGMVTFSLKFYPDRPLPFPTATVSTQKVLLAKADGLLGSAVARFEQAMTLIKAAR
IGIANLRNSLTGVYDVIKEQLKPLIAQYKQITELVRAVKELPKEVAAEFKGLLGDIKELKAFAKEGYRGVIADVSQQIEA
IRKADAPKITTGKDTNAAAQAMANLVQDTLIVKVAQWVASMPVASTPVKLNSTPSLDQQSKQPVSRQEVPVTDDLQALQK
ELSDALQKAQDKADPAHYQAIADVKEALIAHLKAVASSGVRLVSKTFQETFPAVVVAYKQFGDATRVTEVIQRNGLSHPG
YSPNEVKVSRE

Specific function: Unknown

COG id: COG4228

COG function: function code R; Mu-like prophage DNA circulation protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To phage Mu protein N [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009826
- ProDom:   PD332323 [H]

Pfam domain/function: PF07157 DNA_circ_N [H]

EC number: NA

Molecular weight: Translated: 45156; Mature: 45156

Theoretical pI: Translated: 9.52; Mature: 9.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNWRDRLLPASFRGVGFWIDQAKTPVGRKGQLHEYPQRDLPFFEDLGQQAKTHDLTAFII
CCCHHCCCCCCCCCCEEEHHCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHCCCCEEEE
GANCLEQRDKLLQALEQGSGELVHPWLGRLQVKVGECDMTHTRQDGGMVTFSLKFYPDRP
CHHHHHHHHHHHHHHHCCCCCEECHHHCCEEEEECCCCCCCCCCCCCEEEEEEEECCCCC
LPFPTATVSTQKVLLAKADGLLGSAVARFEQAMTLIKAARIGIANLRNSLTGVYDVIKEQ
CCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKPLIAQYKQITELVRAVKELPKEVAAEFKGLLGDIKELKAFAKEGYRGVIADVSQQIEA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
IRKADAPKITTGKDTNAAAQAMANLVQDTLIVKVAQWVASMPVASTPVKLNSTPSLDQQS
HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCHH
KQPVSRQEVPVTDDLQALQKELSDALQKAQDKADPAHYQAIADVKEALIAHLKAVASSGV
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCH
RLVSKTFQETFPAVVVAYKQFGDATRVTEVIQRNGLSHPGYSPNEVKVSRE
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCEEECCC
>Mature Secondary Structure
MNWRDRLLPASFRGVGFWIDQAKTPVGRKGQLHEYPQRDLPFFEDLGQQAKTHDLTAFII
CCCHHCCCCCCCCCCEEEHHCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHCCCCEEEE
GANCLEQRDKLLQALEQGSGELVHPWLGRLQVKVGECDMTHTRQDGGMVTFSLKFYPDRP
CHHHHHHHHHHHHHHHCCCCCEECHHHCCEEEEECCCCCCCCCCCCCEEEEEEEECCCCC
LPFPTATVSTQKVLLAKADGLLGSAVARFEQAMTLIKAARIGIANLRNSLTGVYDVIKEQ
CCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKPLIAQYKQITELVRAVKELPKEVAAEFKGLLGDIKELKAFAKEGYRGVIADVSQQIEA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
IRKADAPKITTGKDTNAAAQAMANLVQDTLIVKVAQWVASMPVASTPVKLNSTPSLDQQS
HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCHH
KQPVSRQEVPVTDDLQALQKELSDALQKAQDKADPAHYQAIADVKEALIAHLKAVASSGV
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCH
RLVSKTFQETFPAVVVAYKQFGDATRVTEVIQRNGLSHPGYSPNEVKVSRE
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]