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The map label for this gene is rimM

Identifier: 77457247

GI number: 77457247

Start: 1184704

End: 1185240

Strand: Direct

Name: rimM

Synonym: Pfl01_1020

Alternate gene names: 77457247

Gene position: 1184704-1185240 (Clockwise)

Preceding gene: 77457246

Following gene: 77457248

Centisome position: 18.4

GC content: 55.87

Gene sequence:

>537_bases
ATGAGCGCGACGCCAGAAAAAGCTGATGACCTGATCGTTGTCGGCAAGATTTTTTCGGTTCACGGCGTTCGCGGCGAGGT
GAAGGTCTTTTCCTTTACCGATCCGATTGAAAACCTGTTGGGCTATCGCAACTGGACGCTTCGGCGCGAAGGCGTGGTGA
AACAGGTCGAGCTGGTCAGCGGCCGATCCACTCAAAAGGATCTGGTTGTAAAGCTCAAAGGCCTCGACGATCGCGATGAA
GCCCGTCTTCTGAGCGGTTACGAGATTTGCATCCCGCGAAGCCTTTTGCCCGACCTGACTGCCGACGAGTACTACTGGTA
CCAGTTGGAGGGTCTGAGCGTCATCAACCAGGACGAACAATTGTTCGGCAAGGTTGATCACCTGTTGGAGACCGGCGCGA
ACGATGTATTGGTGGTCAAGCCCTGCGTTGGCAGCCTGGATGATCGCGAGCGGTTGTTGCCCTATACGGAGCAATGCGTG
CTGGCAATCGACCTGGAAGCAGGCGTGATGAGGGTGGAATGGGACGCGGACTTCTAA

Upstream 100 bases:

>100_bases
ACCAAGAGCGCGTTGCCTACTGGCTGAGCGTTGGTGCACAGCCTTCTGAGCGTGTTGCTCAGTTGCTGAAGGAATCTGCC
AAGGCTGCAGCCTGAGCAGT

Downstream 100 bases:

>100_bases
GCAATGGCCAGCCTGCGCGTAGACGTCATTACGCTGTTCCCCGAGATGTTCTCGGCCATCAGTGAGTACGGCATTACCAG
TCGTGCGGTCAAACAGGGGC

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 178; Mature: 177

Protein sequence:

>178_residues
MSATPEKADDLIVVGKIFSVHGVRGEVKVFSFTDPIENLLGYRNWTLRREGVVKQVELVSGRSTQKDLVVKLKGLDDRDE
ARLLSGYEICIPRSLLPDLTADEYYWYQLEGLSVINQDEQLFGKVDHLLETGANDVLVVKPCVGSLDDRERLLPYTEQCV
LAIDLEAGVMRVEWDADF

Sequences:

>Translated_178_residues
MSATPEKADDLIVVGKIFSVHGVRGEVKVFSFTDPIENLLGYRNWTLRREGVVKQVELVSGRSTQKDLVVKLKGLDDRDE
ARLLSGYEICIPRSLLPDLTADEYYWYQLEGLSVINQDEQLFGKVDHLLETGANDVLVVKPCVGSLDDRERLLPYTEQCV
LAIDLEAGVMRVEWDADF
>Mature_177_residues
SATPEKADDLIVVGKIFSVHGVRGEVKVFSFTDPIENLLGYRNWTLRREGVVKQVELVSGRSTQKDLVVKLKGLDDRDEA
RLLSGYEICIPRSLLPDLTADEYYWYQLEGLSVINQDEQLFGKVDHLLETGANDVLVVKPCVGSLDDRERLLPYTEQCVL
AIDLEAGVMRVEWDADF

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=177, Percent_Identity=38.9830508474576, Blast_Score=130, Evalue=7e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_PSEPF (Q3KHJ3)

Other databases:

- EMBL:   CP000094
- RefSeq:   YP_346752.1
- ProteinModelPortal:   Q3KHJ3
- SMR:   Q3KHJ3
- STRING:   Q3KHJ3
- GeneID:   3716022
- GenomeReviews:   CP000094_GR
- KEGG:   pfo:Pfl01_1020
- eggNOG:   COG0806
- HOGENOM:   HBG703775
- OMA:   AYGIRGW
- ProtClustDB:   PRK00122
- BioCyc:   PFLU205922:PFL_1020-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 20102; Mature: 19971

Theoretical pI: Translated: 4.35; Mature: 4.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSATPEKADDLIVVGKIFSVHGVRGEVKVFSFTDPIENLLGYRNWTLRREGVVKQVELVS
CCCCCCCCCCEEEEEEEEEECCCCCEEEEEEECCHHHHHHCCCCCEEECCCHHHHHHHHC
GRSTQKDLVVKLKGLDDRDEARLLSGYEICIPRSLLPDLTADEYYWYQLEGLSVINQDEQ
CCCCCCEEEEEEECCCCCCHHHHHCCEEEEECHHHCCCCCCCCEEEEEECCCEEECCCHH
LFGKVDHLLETGANDVLVVKPCVGSLDDRERLLPYTEQCVLAIDLEAGVMRVEWDADF
HHHHHHHHHHCCCCCEEEEECCCCCCCCCHHCCCCCCEEEEEEEECCCEEEEEECCCC
>Mature Secondary Structure 
SATPEKADDLIVVGKIFSVHGVRGEVKVFSFTDPIENLLGYRNWTLRREGVVKQVELVS
CCCCCCCCCEEEEEEEEEECCCCCEEEEEEECCHHHHHHCCCCCEEECCCHHHHHHHHC
GRSTQKDLVVKLKGLDDRDEARLLSGYEICIPRSLLPDLTADEYYWYQLEGLSVINQDEQ
CCCCCCEEEEEEECCCCCCHHHHHCCEEEEECHHHCCCCCCCCEEEEEECCCEEECCCHH
LFGKVDHLLETGANDVLVVKPCVGSLDDRERLLPYTEQCVLAIDLEAGVMRVEWDADF
HHHHHHHHHHCCCCCEEEEECCCCCCCCCHHCCCCCCEEEEEEEECCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA