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The map label for this gene is yhdY [H]

Identifier: 77457202

GI number: 77457202

Start: 1135733

End: 1136830

Strand: Direct

Name: yhdY [H]

Synonym: Pfl01_0975

Alternate gene names: 77457202

Gene position: 1135733-1136830 (Clockwise)

Preceding gene: 77457201

Following gene: 77457203

Centisome position: 17.64

GC content: 62.66

Gene sequence:

>1098_bases
ATGAGTACTCATACTTTCAAACCCGATATGCCACCGCCGGCCAAGGTCTTCGGCCCGATGGCGTGGATCCGCGCGAACAT
GTTCTCCAGCTGGCTCAATACGCTGCTGACCCTGTTTGCGTTCTACCTGATCTACCTGGTGGTGCCGCCGATCCTCAGCT
GGGCGATCCTCGATGCCAACTGGGTCGGCACCACCCGCGCCGACTGCACCAAGGAAGGCGCCTGCTGGGTCTTCATCCAG
CAGCGTTTCGGCCAGTTCATGTACGGCTACTACCCGCCGGAACTGCGCTGGCGCGTGGACCTGACCGTGTGGCTGGCGGT
CATCGGCGTGGCGCCACTGTTCATCAAGCGCGTGGCGCACAAGGCGGTGTACGGCCTGAGCTTCCTGGTGGTCTACCCGA
TTGTTGCCTGGTGCCTGCTGCATGGCGGCGTCTTCGGCCTCGACACCGTGGCGACCAGCCAGTGGGGCGGTCTGATGCTG
ACCCTTGTGATCGCCACTGTCGGCATCGCCGGTGCGTTGCCGCTGGGGATTGTCCTGGCGCTGGGCCGGCGTTCGAACAT
GCCGGCGATTCGTGTGGTCTGCGTGACCTTCATCGAGTTCTGGCGCGGCGTGCCGTTGATCACGGTGCTGTTCATGTCCT
CGGTGATGCTGCCGCTGTTCCTGCCCGAAGGCATGAACTTCGACAAGCTGCTGCGGGCGCTGATCGGCGTGATCCTGTTC
CAGTCGGCGTACGTCGCCGAGGTGGTGCGCGGCGGTCTGCAAGCGATCCCCAAAGGCCAGTACGAAGCCGCGGCCGCGAT
GGGCCTCGGTTACTGGCGCGCCATGGGCCTGGTGATTCTGCCGCAAGCCCTGAAGCTGGTGATTCCCGGCATCGTCAACA
CCTTCATCGCGCTGTTCAAGGACACCAGCCTGGTGATCATCATCGGCCTCTTTGACCTGCTCAACAGCGTCAAGCAAGCC
GCTGCCGATCCGAAATGGCTGGGCATGGCCACCGAAGGCTACGTGTTCGCCGCCCTGGTGTTCTGGATTTTCTGTTTTGG
TATGTCGCGCTATTCCATGCACCTGGAACGCAAGCTCGACACTGGCCACAAGCGTTAG

Upstream 100 bases:

>100_bases
ATCACCATGAGCGTGTACCTGGCGATCAGTATCAGCATTTCCCTGCTGATGAACTGGTACAACAAGCGCATCGCGCTGAT
CGAGCGGTAAGGAATAGCGC

Downstream 100 bases:

>100_bases
GAGTTTTTTCGATGAGCGAAGCAATCAAAAAGCCAGTGGGCCCTGAAGGCATCATTCAGATGCAGGGCGTGAACAAGTGG
TACGGCCAGTTCCACGTGCT

Product: amino acid ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 365; Mature: 364

Protein sequence:

>365_residues
MSTHTFKPDMPPPAKVFGPMAWIRANMFSSWLNTLLTLFAFYLIYLVVPPILSWAILDANWVGTTRADCTKEGACWVFIQ
QRFGQFMYGYYPPELRWRVDLTVWLAVIGVAPLFIKRVAHKAVYGLSFLVVYPIVAWCLLHGGVFGLDTVATSQWGGLML
TLVIATVGIAGALPLGIVLALGRRSNMPAIRVVCVTFIEFWRGVPLITVLFMSSVMLPLFLPEGMNFDKLLRALIGVILF
QSAYVAEVVRGGLQAIPKGQYEAAAAMGLGYWRAMGLVILPQALKLVIPGIVNTFIALFKDTSLVIIIGLFDLLNSVKQA
AADPKWLGMATEGYVFAALVFWIFCFGMSRYSMHLERKLDTGHKR

Sequences:

>Translated_365_residues
MSTHTFKPDMPPPAKVFGPMAWIRANMFSSWLNTLLTLFAFYLIYLVVPPILSWAILDANWVGTTRADCTKEGACWVFIQ
QRFGQFMYGYYPPELRWRVDLTVWLAVIGVAPLFIKRVAHKAVYGLSFLVVYPIVAWCLLHGGVFGLDTVATSQWGGLML
TLVIATVGIAGALPLGIVLALGRRSNMPAIRVVCVTFIEFWRGVPLITVLFMSSVMLPLFLPEGMNFDKLLRALIGVILF
QSAYVAEVVRGGLQAIPKGQYEAAAAMGLGYWRAMGLVILPQALKLVIPGIVNTFIALFKDTSLVIIIGLFDLLNSVKQA
AADPKWLGMATEGYVFAALVFWIFCFGMSRYSMHLERKLDTGHKR
>Mature_364_residues
STHTFKPDMPPPAKVFGPMAWIRANMFSSWLNTLLTLFAFYLIYLVVPPILSWAILDANWVGTTRADCTKEGACWVFIQQ
RFGQFMYGYYPPELRWRVDLTVWLAVIGVAPLFIKRVAHKAVYGLSFLVVYPIVAWCLLHGGVFGLDTVATSQWGGLMLT
LVIATVGIAGALPLGIVLALGRRSNMPAIRVVCVTFIEFWRGVPLITVLFMSSVMLPLFLPEGMNFDKLLRALIGVILFQ
SAYVAEVVRGGLQAIPKGQYEAAAAMGLGYWRAMGLVILPQALKLVIPGIVNTFIALFKDTSLVIIIGLFDLLNSVKQAA
ADPKWLGMATEGYVFAALVFWIFCFGMSRYSMHLERKLDTGHKR

Specific function: Probably part of the binding-protein-dependent transport system ydhWXYZ for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI87082239, Length=357, Percent_Identity=65.8263305322129, Blast_Score=500, Evalue=1e-143,
Organism=Escherichia coli, GI1788226, Length=205, Percent_Identity=36.0975609756098, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI1786873, Length=207, Percent_Identity=30.4347826086957, Blast_Score=108, Evalue=7e-25,
Organism=Escherichia coli, GI1787030, Length=205, Percent_Identity=30.7317073170732, Blast_Score=89, Evalue=7e-19,
Organism=Escherichia coli, GI1786874, Length=184, Percent_Identity=29.3478260869565, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788646, Length=220, Percent_Identity=26.3636363636364, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI48994930, Length=77, Percent_Identity=38.961038961039, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1788645, Length=168, Percent_Identity=30.3571428571429, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787087, Length=103, Percent_Identity=32.0388349514563, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 40538; Mature: 40407

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCC
>Mature Secondary Structure 
STHTFKPDMPPPAKVFGPMAWIRANMFSSWLNTLLTLFAFYLIYLVVPPILSWAILDAN
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC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CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]