Definition Pseudomonas fluorescens Pf0-1 chromosome, complete genome.
Accession NC_007492
Length 6,438,405

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The map label for this gene is vdlC [H]

Identifier: 77457172

GI number: 77457172

Start: 1097298

End: 1098122

Strand: Reverse

Name: vdlC [H]

Synonym: Pfl01_0945

Alternate gene names: 77457172

Gene position: 1098122-1097298 (Counterclockwise)

Preceding gene: 77457173

Following gene: 77457170

Centisome position: 17.06

GC content: 62.42

Gene sequence:

>825_bases
ATGCCCGTTGCGTTGATTACCGGTTGTTCCAGCGGCATCGGCCGCGCCCTCGCCGATGCCTTCAAAAATGCCGGCTACGA
GGTCTGGGCCAGTGCACGCAAAGTTGAAGATGTCGCGACACTCGGCGCTGCCGGATTTACCGCCGTGCAGCTCGACGTCA
ATGACAATGCCGCGCTGGAACAGCTCGCCGAGCGAATCAATCAGCAACACGGCGGCCTCGATGTGCTGATCAACAATGCC
GGTTACGGCGCCATGGGGCCGCTGCTCGACGGCGGTGTTTCAGCCATGCAGCGCCAGTTCGAAACCAACGTGTTTTCGAT
TGTCGGCGTGACCCGTGCGCTGTTCCCGGTGCTGCGCCGGGCCAAAGGCCTGGTGGTGAATGTCGGCAGTGTTTCCGGGG
TGCTGGTCACGCCATTTGCCGGCGCCTATTGCGCCTCGAAAGCGGCGGTGCATGCGTTGAGCGATGCGTTGCGCATGGAG
CTGGCGCCGTTCGGAATTCGCGTGATGGAAGTGCAGCCGGGGGCGATTCAGTCCAGCTTCGCCAAGAATGCCGGGCATGA
GGCCGAACAACTGATCAACGAACAATCGCCGTGGTTTCCGTTGCGCGAAGGCATCCGGGCGCGGGCCAAAGCGTCCCAGG
ACAAACCGACGCCAGCCAGCGAATTTGCCGCCGAATTGCTCAAGGCTGTGCAGCAGAGCAAGCCACCGCGACTGATCCGC
ATCGGCAATGGCAGCCGGGCGTTGCCGTTGCTGGCGACGTTACTGCCGAAGGGGTTGCTGGAGTCGACATTGATGAAGCG
CTTCGGCTTGCGCCGGCAACTCTGA

Upstream 100 bases:

>100_bases
CCGGTTATCGCCCGCAAACCCTGGAGTTTCGCGCCGAGCGCTTGCAGGGCAGTTTCTCCGACTGATCCCCTCTCCCACTG
TTTTGCACAAGGAATGCGCC

Downstream 100 bases:

>100_bases
GACAGAGTCAGCGCCGGCCCTTCATGAAATCAATGAACGCCCGCACCTTCAGTGGCAGGTGCCGGGTGTCCGGGTAAAGC
GCATAAACCCCTTGCTGGGC

Product: short chain dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 274; Mature: 273

Protein sequence:

>274_residues
MPVALITGCSSGIGRALADAFKNAGYEVWASARKVEDVATLGAAGFTAVQLDVNDNAALEQLAERINQQHGGLDVLINNA
GYGAMGPLLDGGVSAMQRQFETNVFSIVGVTRALFPVLRRAKGLVVNVGSVSGVLVTPFAGAYCASKAAVHALSDALRME
LAPFGIRVMEVQPGAIQSSFAKNAGHEAEQLINEQSPWFPLREGIRARAKASQDKPTPASEFAAELLKAVQQSKPPRLIR
IGNGSRALPLLATLLPKGLLESTLMKRFGLRRQL

Sequences:

>Translated_274_residues
MPVALITGCSSGIGRALADAFKNAGYEVWASARKVEDVATLGAAGFTAVQLDVNDNAALEQLAERINQQHGGLDVLINNA
GYGAMGPLLDGGVSAMQRQFETNVFSIVGVTRALFPVLRRAKGLVVNVGSVSGVLVTPFAGAYCASKAAVHALSDALRME
LAPFGIRVMEVQPGAIQSSFAKNAGHEAEQLINEQSPWFPLREGIRARAKASQDKPTPASEFAAELLKAVQQSKPPRLIR
IGNGSRALPLLATLLPKGLLESTLMKRFGLRRQL
>Mature_273_residues
PVALITGCSSGIGRALADAFKNAGYEVWASARKVEDVATLGAAGFTAVQLDVNDNAALEQLAERINQQHGGLDVLINNAG
YGAMGPLLDGGVSAMQRQFETNVFSIVGVTRALFPVLRRAKGLVVNVGSVSGVLVTPFAGAYCASKAAVHALSDALRMEL
APFGIRVMEVQPGAIQSSFAKNAGHEAEQLINEQSPWFPLREGIRARAKASQDKPTPASEFAAELLKAVQQSKPPRLIRI
GNGSRALPLLATLLPKGLLESTLMKRFGLRRQL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI20149619, Length=195, Percent_Identity=35.3846153846154, Blast_Score=111, Evalue=6e-25,
Organism=Homo sapiens, GI223718074, Length=282, Percent_Identity=30.4964539007092, Blast_Score=109, Evalue=3e-24,
Organism=Homo sapiens, GI7706318, Length=194, Percent_Identity=30.4123711340206, Blast_Score=101, Evalue=6e-22,
Organism=Homo sapiens, GI7657478, Length=187, Percent_Identity=36.8983957219251, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI119392083, Length=200, Percent_Identity=31.5, Blast_Score=99, Evalue=4e-21,
Organism=Homo sapiens, GI44680136, Length=181, Percent_Identity=32.0441988950276, Blast_Score=99, Evalue=5e-21,
Organism=Homo sapiens, GI44680133, Length=181, Percent_Identity=32.0441988950276, Blast_Score=99, Evalue=5e-21,
Organism=Homo sapiens, GI17738292, Length=181, Percent_Identity=32.0441988950276, Blast_Score=99, Evalue=5e-21,
Organism=Homo sapiens, GI40548397, Length=183, Percent_Identity=33.879781420765, Blast_Score=95, Evalue=5e-20,
Organism=Homo sapiens, GI214010158, Length=183, Percent_Identity=33.879781420765, Blast_Score=95, Evalue=5e-20,
Organism=Homo sapiens, GI214010156, Length=183, Percent_Identity=33.879781420765, Blast_Score=95, Evalue=5e-20,
Organism=Homo sapiens, GI22758144, Length=183, Percent_Identity=33.879781420765, Blast_Score=95, Evalue=5e-20,
Organism=Homo sapiens, GI109715829, Length=194, Percent_Identity=33.5051546391753, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI50726952, Length=180, Percent_Identity=37.7777777777778, Blast_Score=93, Evalue=3e-19,
Organism=Homo sapiens, GI150247226, Length=183, Percent_Identity=34.9726775956284, Blast_Score=92, Evalue=4e-19,
Organism=Homo sapiens, GI22507405, Length=182, Percent_Identity=33.5164835164835, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI19743808, Length=181, Percent_Identity=32.0441988950276, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI4504503, Length=286, Percent_Identity=26.5734265734266, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI32483357, Length=214, Percent_Identity=31.7757009345794, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI7705925, Length=196, Percent_Identity=29.0816326530612, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI157739938, Length=188, Percent_Identity=28.7234042553192, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI142976729, Length=208, Percent_Identity=28.3653846153846, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI33667109, Length=187, Percent_Identity=32.0855614973262, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI5031737, Length=187, Percent_Identity=32.0855614973262, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI32455239, Length=165, Percent_Identity=30.3030303030303, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI5031765, Length=165, Percent_Identity=30.3030303030303, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI210032110, Length=192, Percent_Identity=28.125, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI40254992, Length=190, Percent_Identity=30.5263157894737, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI7705855, Length=192, Percent_Identity=27.0833333333333, Blast_Score=69, Evalue=6e-12,
Organism=Homo sapiens, GI126723191, Length=174, Percent_Identity=32.7586206896552, Blast_Score=69, Evalue=6e-12,
Organism=Homo sapiens, GI59889578, Length=174, Percent_Identity=28.1609195402299, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI4503817, Length=181, Percent_Identity=27.0718232044199, Blast_Score=65, Evalue=7e-11,
Organism=Escherichia coli, GI1786701, Length=185, Percent_Identity=42.7027027027027, Blast_Score=128, Evalue=5e-31,
Organism=Escherichia coli, GI87082100, Length=211, Percent_Identity=30.3317535545024, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI1787820, Length=181, Percent_Identity=31.4917127071823, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1787335, Length=188, Percent_Identity=31.3829787234043, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1789378, Length=205, Percent_Identity=30.7317073170732, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1788459, Length=213, Percent_Identity=31.4553990610329, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI2367175, Length=201, Percent_Identity=31.3432835820896, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787905, Length=204, Percent_Identity=29.4117647058824, Blast_Score=62, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI71994600, Length=201, Percent_Identity=35.8208955223881, Blast_Score=114, Evalue=6e-26,
Organism=Caenorhabditis elegans, GI71994604, Length=234, Percent_Identity=32.9059829059829, Blast_Score=110, Evalue=6e-25,
Organism=Caenorhabditis elegans, GI115534660, Length=203, Percent_Identity=31.0344827586207, Blast_Score=93, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17557780, Length=194, Percent_Identity=28.3505154639175, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17507613, Length=202, Percent_Identity=30.1980198019802, Blast_Score=85, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI32563809, Length=202, Percent_Identity=30.1980198019802, Blast_Score=84, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI17562904, Length=197, Percent_Identity=30.4568527918782, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17551412, Length=199, Percent_Identity=30.6532663316583, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17560332, Length=196, Percent_Identity=30.6122448979592, Blast_Score=81, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI17562908, Length=199, Percent_Identity=31.1557788944724, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17544670, Length=226, Percent_Identity=27.8761061946903, Blast_Score=80, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17559104, Length=219, Percent_Identity=29.2237442922374, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17538480, Length=220, Percent_Identity=29.0909090909091, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17562906, Length=213, Percent_Identity=30.5164319248826, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17562910, Length=221, Percent_Identity=28.5067873303167, Blast_Score=77, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI17570069, Length=188, Percent_Identity=30.8510638297872, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17563726, Length=191, Percent_Identity=28.2722513089005, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI193204405, Length=199, Percent_Identity=30.1507537688442, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17565030, Length=196, Percent_Identity=31.6326530612245, Blast_Score=75, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI71997402, Length=188, Percent_Identity=30.3191489361702, Blast_Score=74, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI193210355, Length=194, Percent_Identity=29.8969072164948, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17562990, Length=192, Percent_Identity=30.7291666666667, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17560220, Length=197, Percent_Identity=29.9492385786802, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17538486, Length=198, Percent_Identity=29.7979797979798, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17560150, Length=195, Percent_Identity=29.2307692307692, Blast_Score=68, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17560676, Length=194, Percent_Identity=31.4432989690722, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI72000259, Length=194, Percent_Identity=27.8350515463918, Blast_Score=65, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6322067, Length=278, Percent_Identity=32.0143884892086, Blast_Score=140, Evalue=3e-34,
Organism=Saccharomyces cerevisiae, GI6323882, Length=213, Percent_Identity=33.3333333333333, Blast_Score=104, Evalue=2e-23,
Organism=Saccharomyces cerevisiae, GI6322227, Length=196, Percent_Identity=30.6122448979592, Blast_Score=74, Evalue=3e-14,
Organism=Saccharomyces cerevisiae, GI6322226, Length=204, Percent_Identity=27.9411764705882, Blast_Score=63, Evalue=5e-11,
Organism=Drosophila melanogaster, GI21357041, Length=197, Percent_Identity=31.9796954314721, Blast_Score=96, Evalue=3e-20,
Organism=Drosophila melanogaster, GI23397609, Length=195, Percent_Identity=35.3846153846154, Blast_Score=95, Evalue=4e-20,
Organism=Drosophila melanogaster, GI28571526, Length=194, Percent_Identity=34.020618556701, Blast_Score=94, Evalue=1e-19,
Organism=Drosophila melanogaster, GI21358495, Length=193, Percent_Identity=32.1243523316062, Blast_Score=93, Evalue=2e-19,
Organism=Drosophila melanogaster, GI24644339, Length=194, Percent_Identity=34.020618556701, Blast_Score=92, Evalue=5e-19,
Organism=Drosophila melanogaster, GI116007236, Length=197, Percent_Identity=30.9644670050761, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI281364892, Length=272, Percent_Identity=26.1029411764706, Blast_Score=85, Evalue=5e-17,
Organism=Drosophila melanogaster, GI24641232, Length=230, Percent_Identity=30.8695652173913, Blast_Score=84, Evalue=9e-17,
Organism=Drosophila melanogaster, GI116007238, Length=182, Percent_Identity=32.4175824175824, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24651139, Length=254, Percent_Identity=27.5590551181102, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24643142, Length=179, Percent_Identity=33.5195530726257, Blast_Score=77, Evalue=9e-15,
Organism=Drosophila melanogaster, GI24580925, Length=198, Percent_Identity=29.2929292929293, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI21355319, Length=188, Percent_Identity=31.3829787234043, Blast_Score=76, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24640492, Length=193, Percent_Identity=25.9067357512953, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24640442, Length=192, Percent_Identity=27.6041666666667, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24663911, Length=195, Percent_Identity=31.7948717948718, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24648944, Length=191, Percent_Identity=29.3193717277487, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI281364494, Length=202, Percent_Identity=28.7128712871287, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24584752, Length=184, Percent_Identity=28.804347826087, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24644337, Length=139, Percent_Identity=36.6906474820144, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI28571387, Length=195, Percent_Identity=29.7435897435897, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24581726, Length=171, Percent_Identity=29.8245614035088, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24641388, Length=196, Percent_Identity=30.6122448979592, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI116007234, Length=196, Percent_Identity=30.1020408163265, Blast_Score=65, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 29026; Mature: 28895

Theoretical pI: Translated: 10.22; Mature: 10.22

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MPVALITGCSSGIGRALADAFKNAGYEVWASARKVEDVATLGAAGFTAVQLDVNDNAALE
CCEEEEECCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHH
QLAERINQQHGGLDVLINNAGYGAMGPLLDGGVSAMQRQFETNVFSIVGVTRALFPVLRR
HHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AKGLVVNVGSVSGVLVTPFAGAYCASKAAVHALSDALRMELAPFGIRVMEVQPGAIQSSF
CCCEEEECCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHH
AKNAGHEAEQLINEQSPWFPLREGIRARAKASQDKPTPASEFAAELLKAVQQSKPPRLIR
HHCCCHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCEEE
IGNGSRALPLLATLLPKGLLESTLMKRFGLRRQL
ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PVALITGCSSGIGRALADAFKNAGYEVWASARKVEDVATLGAAGFTAVQLDVNDNAALE
CEEEEECCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHH
QLAERINQQHGGLDVLINNAGYGAMGPLLDGGVSAMQRQFETNVFSIVGVTRALFPVLRR
HHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AKGLVVNVGSVSGVLVTPFAGAYCASKAAVHALSDALRMELAPFGIRVMEVQPGAIQSSF
CCCEEEECCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHH
AKNAGHEAEQLINEQSPWFPLREGIRARAKASQDKPTPASEFAAELLKAVQQSKPPRLIR
HHCCCHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCEEE
IGNGSRALPLLATLLPKGLLESTLMKRFGLRRQL
ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9139899; 9252185 [H]