| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is yoaV [H]
Identifier: 77457161
GI number: 77457161
Start: 1085295
End: 1086197
Strand: Direct
Name: yoaV [H]
Synonym: Pfl01_0934
Alternate gene names: 77457161
Gene position: 1085295-1086197 (Clockwise)
Preceding gene: 77457160
Following gene: 77457165
Centisome position: 16.86
GC content: 61.02
Gene sequence:
>903_bases ATGAACCTGTCGTTGTATTTGTTGACCGTGCTGATCTGGGGCACCACCTGGATCGCCTTGAAGTGGCAGCTGGGCGTGGT GGCGATTCCGGTGTCGATCGTCTATCGCTTCGGTCTCGCCGCGCTGGTCCTGTTTGCGCTGTTGCTGATCAGCCGGCGCC TGCAACCGATGAACCGGCGCGGGCATCTGATCTGTGTCGCGCAGGGCTTGTGCCTGTTCTGCGTCAATTTCATGTGCTTT CTGACTGCCAGCCAATGGATTCCCAGCGGTCTGGTGGCGGTGGTGTTCTCTACTGCGACCTTGTGGAATGCGCTGAATGC GCGAGTGTTCTTCGGCCAGCGTATCGCGCGTAATGTGCTGATGGGCGGGGCGCTGGGACTTGGCGGTCTGGGCCTGTTGT TCTGGCCTGAGCTGGCCGGGCATCACGCCAGTCCGCAAACTCTGCTCGGCCTTGGCCTGGCACTCTGCGGCACCTTGTGT TTCTCGGCGGGCAACATGCTCTCGAGCCTGCAACAGAAGGCTGGCCTCAAGCCGCTGACGACCAATGCGTGGGGTATGGC TTACGGTGCAGCGATGCTGTCGGTGTGGTGCCTGGTCAAGGGCATTCCGTTCGAGATGGAATGGACGTCGCGCTACATCG GCGCCTTGCTGTACCTGGTCATTCCCGGGTCGGTGATCGGCTTCACCGCGTACCTGACACTGGTCGGTCGTATGGGACCA GAGCGCGCGGCTTATTGCACGGTGCTGTTCCCGGTGGTGGCGCTGAACGTATCGGCCTTTGCCGAAGGCTATCAATGGAC GGCGCCGGCGTTGGCTGGACTGGTGCTGGTGATGCTGGGCAATGTGTTGGTGTTTCGTAAACCGAAGGCGCTAGTGTCGC CGGTACAAGGAAAGTTGGCGTGA
Upstream 100 bases:
>100_bases GAATACTTCGTGCAGTGCGGGTAGTTAAAAAGAGCAATTTTTTGCAAGCGTGAAAGGTCGTCCTCAGCAGACACTGAAAC CCAATCGAGGAGTGTCTGCC
Downstream 100 bases:
>100_bases GATAAACGAGCGCTGAACTTCAGCGCTCGACTTTCAATGTGATGTAGATCATCACCGGGAATATAAAGTCAACAATATGC CGTGCCCAGTCCTTGGCATT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 300; Mature: 300
Protein sequence:
>300_residues MNLSLYLLTVLIWGTTWIALKWQLGVVAIPVSIVYRFGLAALVLFALLLISRRLQPMNRRGHLICVAQGLCLFCVNFMCF LTASQWIPSGLVAVVFSTATLWNALNARVFFGQRIARNVLMGGALGLGGLGLLFWPELAGHHASPQTLLGLGLALCGTLC FSAGNMLSSLQQKAGLKPLTTNAWGMAYGAAMLSVWCLVKGIPFEMEWTSRYIGALLYLVIPGSVIGFTAYLTLVGRMGP ERAAYCTVLFPVVALNVSAFAEGYQWTAPALAGLVLVMLGNVLVFRKPKALVSPVQGKLA
Sequences:
>Translated_300_residues MNLSLYLLTVLIWGTTWIALKWQLGVVAIPVSIVYRFGLAALVLFALLLISRRLQPMNRRGHLICVAQGLCLFCVNFMCF LTASQWIPSGLVAVVFSTATLWNALNARVFFGQRIARNVLMGGALGLGGLGLLFWPELAGHHASPQTLLGLGLALCGTLC FSAGNMLSSLQQKAGLKPLTTNAWGMAYGAAMLSVWCLVKGIPFEMEWTSRYIGALLYLVIPGSVIGFTAYLTLVGRMGP ERAAYCTVLFPVVALNVSAFAEGYQWTAPALAGLVLVMLGNVLVFRKPKALVSPVQGKLA >Mature_300_residues MNLSLYLLTVLIWGTTWIALKWQLGVVAIPVSIVYRFGLAALVLFALLLISRRLQPMNRRGHLICVAQGLCLFCVNFMCF LTASQWIPSGLVAVVFSTATLWNALNARVFFGQRIARNVLMGGALGLGGLGLLFWPELAGHHASPQTLLGLGLALCGTLC FSAGNMLSSLQQKAGLKPLTTNAWGMAYGAAMLSVWCLVKGIPFEMEWTSRYIGALLYLVIPGSVIGFTAYLTLVGRMGP ERAAYCTVLFPVVALNVSAFAEGYQWTAPALAGLVLVMLGNVLVFRKPKALVSPVQGKLA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 DUF6 domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000620 [H]
Pfam domain/function: PF00892 DUF6 [H]
EC number: NA
Molecular weight: Translated: 32296; Mature: 32296
Theoretical pI: Translated: 10.10; Mature: 10.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 6.0 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 6.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNLSLYLLTVLIWGTTWIALKWQLGVVAIPVSIVYRFGLAALVLFALLLISRRLQPMNRR CCHHHHHHHHHHHHHHHEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC GHLICVAQGLCLFCVNFMCFLTASQWIPSGLVAVVFSTATLWNALNARVFFGQRIARNVL CCEEEEHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MGGALGLGGLGLLFWPELAGHHASPQTLLGLGLALCGTLCFSAGNMLSSLQQKAGLKPLT HCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC TNAWGMAYGAAMLSVWCLVKGIPFEMEWTSRYIGALLYLVIPGSVIGFTAYLTLVGRMGP CCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC ERAAYCTVLFPVVALNVSAFAEGYQWTAPALAGLVLVMLGNVLVFRKPKALVSPVQGKLA CHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHEEECCHHHHCCCCCCCC >Mature Secondary Structure MNLSLYLLTVLIWGTTWIALKWQLGVVAIPVSIVYRFGLAALVLFALLLISRRLQPMNRR CCHHHHHHHHHHHHHHHEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC GHLICVAQGLCLFCVNFMCFLTASQWIPSGLVAVVFSTATLWNALNARVFFGQRIARNVL CCEEEEHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MGGALGLGGLGLLFWPELAGHHASPQTLLGLGLALCGTLCFSAGNMLSSLQQKAGLKPLT HCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC TNAWGMAYGAAMLSVWCLVKGIPFEMEWTSRYIGALLYLVIPGSVIGFTAYLTLVGRMGP CCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC ERAAYCTVLFPVVALNVSAFAEGYQWTAPALAGLVLVMLGNVLVFRKPKALVSPVQGKLA CHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHEEECCHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]