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The map label for this gene is xerC [H]

Identifier: 77454860

GI number: 77454860

Start: 264836

End: 265861

Strand: Direct

Name: xerC [H]

Synonym: pREL1_0293

Alternate gene names: 77454860

Gene position: 264836-265861 (Clockwise)

Preceding gene: 77454858

Following gene: 77454861

Centisome position: 97.52

GC content: 61.79

Gene sequence:

>1026_bases
ATGAATGCTTTCGTCCCAGCGCTGGTCCGGCCGCCTGGCGAAATTCCACGACTCGGCGAACCACTTCTCGATGAATACCT
ACGCTTCGTCGCTGCGAGAGCACGAACCAACACCCTCCTGGCACAGACGTTCGACCTGAAAGTCTTCTTCACCATCATCG
GCAAGGAACCGACGCAGGTGAGCACCAGCGATGTACTGGCTTTCATTCAAGCGCAACGACTTCCACGCAAAGAGAATGTG
GTCCGCCTCAGCGACGGCGAATCGGGACTGGCCACCTCGACCATCAAACGTCGACTGGCGTCGATCTCCGGCCTGTTCTC
CTACCTCCATGAGCGTGGGCTGGTCGAGAAGAATCCCGTGCCGCGAGGCCTCTCGACCCGGTCAGGACGCTCTCACGTTC
GCGGGACCCCACTGATCAGAGCGCCGCGGCGCCTCCCACGGGTACTGAGCCCCGACGAGGTCAACGCACTATTGGCCGCG
CTACGCTGCGAACGAGACCGGGCGATGGTCCTGTTGATGCTGTTCGGCGGACTACGCCGATGCGAGGTGCTGGGCTTACG
GATGCCCGATGTCCGACCCGGTGAGCGACGAGTGTTCGTCGCCGCCGGCAAAGGCGGCCACCAACGCATCGTCCCGGTCG
CACCGACCTTCTTCGAAAGCCTCGGCCGCTATCTCGACGCCGAACGCCCGATCGACAGTGCCACCGATCATGTCTTCGTG
GTCCTCAAACGTCCCAGACGCGGCAACCCGCTTTCCGCGGCCGGTCTCGATGAAATTCTCTCCGGCGCCCGAGTTCGAGG
CGGGTTACCTCATGCGACATGTCACGAACTTCGACACACCTGCTTCACCCGACTCCGCGAATCGGGGATGGCGTTGGAGG
CGATTCAAGCTCAAGCCGGGCACGCATCCATCGAGTCCACACGCATCTATCTGCATCTGGCCAACGACTGGCTGATCGGC
GAGTATTCCAAGGCGATGGACATTCTCGACGGCATCGCCGGTGACATCCCTGGAGATGCGAAATGA

Upstream 100 bases:

>100_bases
CGAGTTCCCCCGCGAAGAAAATCATGATATGTGGGTGATCTGACGCATCCAGTGTCAGGCTGATCATGTCGGTTGTCGGC
TCGATCGAGGAGGCCCCACA

Downstream 100 bases:

>100_bases
GCGTTCCGACAGACTCTTTGAGAAAACCTGAGTCAACCGCGGCCCGCACATACGTTCACGCGGTCACCAATGCACATGCC
CACCGAACCCGACTCCGGGC

Product: putative transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 341; Mature: 341

Protein sequence:

>341_residues
MNAFVPALVRPPGEIPRLGEPLLDEYLRFVAARARTNTLLAQTFDLKVFFTIIGKEPTQVSTSDVLAFIQAQRLPRKENV
VRLSDGESGLATSTIKRRLASISGLFSYLHERGLVEKNPVPRGLSTRSGRSHVRGTPLIRAPRRLPRVLSPDEVNALLAA
LRCERDRAMVLLMLFGGLRRCEVLGLRMPDVRPGERRVFVAAGKGGHQRIVPVAPTFFESLGRYLDAERPIDSATDHVFV
VLKRPRRGNPLSAAGLDEILSGARVRGGLPHATCHELRHTCFTRLRESGMALEAIQAQAGHASIESTRIYLHLANDWLIG
EYSKAMDILDGIAGDIPGDAK

Sequences:

>Translated_341_residues
MNAFVPALVRPPGEIPRLGEPLLDEYLRFVAARARTNTLLAQTFDLKVFFTIIGKEPTQVSTSDVLAFIQAQRLPRKENV
VRLSDGESGLATSTIKRRLASISGLFSYLHERGLVEKNPVPRGLSTRSGRSHVRGTPLIRAPRRLPRVLSPDEVNALLAA
LRCERDRAMVLLMLFGGLRRCEVLGLRMPDVRPGERRVFVAAGKGGHQRIVPVAPTFFESLGRYLDAERPIDSATDHVFV
VLKRPRRGNPLSAAGLDEILSGARVRGGLPHATCHELRHTCFTRLRESGMALEAIQAQAGHASIESTRIYLHLANDWLIG
EYSKAMDILDGIAGDIPGDAK
>Mature_341_residues
MNAFVPALVRPPGEIPRLGEPLLDEYLRFVAARARTNTLLAQTFDLKVFFTIIGKEPTQVSTSDVLAFIQAQRLPRKENV
VRLSDGESGLATSTIKRRLASISGLFSYLHERGLVEKNPVPRGLSTRSGRSHVRGTPLIRAPRRLPRVLSPDEVNALLAA
LRCERDRAMVLLMLFGGLRRCEVLGLRMPDVRPGERRVFVAAGKGGHQRIVPVAPTFFESLGRYLDAERPIDSATDHVFV
VLKRPRRGNPLSAAGLDEILSGARVRGGLPHATCHELRHTCFTRLRESGMALEAIQAQAGHASIESTRIYLHLANDWLIG
EYSKAMDILDGIAGDIPGDAK

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=244, Percent_Identity=28.6885245901639, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1789261, Length=292, Percent_Identity=28.7671232876712, Blast_Score=80, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 37553; Mature: 37553

Theoretical pI: Translated: 10.63; Mature: 10.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAFVPALVRPPGEIPRLGEPLLDEYLRFVAARARTNTLLAQTFDLKVFFTIIGKEPTQV
CCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCC
STSDVLAFIQAQRLPRKENVVRLSDGESGLATSTIKRRLASISGLFSYLHERGLVEKNPV
CHHHHHHHHHHHHCCCHHCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PRGLSTRSGRSHVRGTPLIRAPRRLPRVLSPDEVNALLAALRCERDRAMVLLMLFGGLRR
CCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCHHH
CEVLGLRMPDVRPGERRVFVAAGKGGHQRIVPVAPTFFESLGRYLDAERPIDSATDHVFV
HHEECCCCCCCCCCCCEEEEEECCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCCCEEEE
VLKRPRRGNPLSAAGLDEILSGARVRGGLPHATCHELRHTCFTRLRESGMALEAIQAQAG
EEECCCCCCCCCCCCHHHHHCCCHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCC
HASIESTRIYLHLANDWLIGEYSKAMDILDGIAGDIPGDAK
CCCCCCEEEEEEECCCCEEHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MNAFVPALVRPPGEIPRLGEPLLDEYLRFVAARARTNTLLAQTFDLKVFFTIIGKEPTQV
CCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCC
STSDVLAFIQAQRLPRKENVVRLSDGESGLATSTIKRRLASISGLFSYLHERGLVEKNPV
CHHHHHHHHHHHHCCCHHCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PRGLSTRSGRSHVRGTPLIRAPRRLPRVLSPDEVNALLAALRCERDRAMVLLMLFGGLRR
CCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCHHH
CEVLGLRMPDVRPGERRVFVAAGKGGHQRIVPVAPTFFESLGRYLDAERPIDSATDHVFV
HHEECCCCCCCCCCCCEEEEEECCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCCCEEEE
VLKRPRRGNPLSAAGLDEILSGARVRGGLPHATCHELRHTCFTRLRESGMALEAIQAQAG
EEECCCCCCCCCCCCHHHHHCCCHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCC
HASIESTRIYLHLANDWLIGEYSKAMDILDGIAGDIPGDAK
CCCCCCEEEEEEECCCCEEHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA