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The map label for this gene is yebA [H]

Identifier: 77454686

GI number: 77454686

Start: 118078

End: 118875

Strand: Direct

Name: yebA [H]

Synonym: pREL1_0119

Alternate gene names: 77454686

Gene position: 118078-118875 (Clockwise)

Preceding gene: 77454685

Following gene: 77454687

Centisome position: 43.48

GC content: 61.65

Gene sequence:

>798_bases
ATGTATATCTCCACCGCATCTGCAGTCGACCGTGAATCCGTCGCTGGAAGCGTTCAGGCGCGACGCGGCGGTGCTCATCG
CCGACAGTCCCGCAGTCGTCCTGGTGGACGGGCTTTGGTTCTCTCTGTCGCCACCGGCGCTTTGCTTGCCGCCGGCACAT
CCGCCTCACATGCATCGGCAGGGAGCGTCAGTGCTCCCGTCGAGCTCGACCAACAACCGCTGGCACCTCTCGACCAGGCA
CTGGCATCGGCTCCGGAAATTCTCCAGGTTCCCAAACTGGCCGACCTGGGGAGGCTGGCCGAACAGTTGGCTCGAGGCAC
CGAACGCGACACCGATCGCGCGTCGAGAGAGGCAACCGATCGCGCGTCGAGAGAGGCAGCTGCACGCCAACCGCTGACGA
TGGCTCCTGTCAGCGGAACATTGACGTCGAACTACGGGCCGCGTTGGGGGTCGACTCATTACGGGTTGGACATTGCCAAT
GAGATTGGTACACCTATCGTGTCCGTGACCGACGGTACGGTACTCGAGTCCGGACCTGCGTCGGGTTTCGGACTGTGGGT
CCGTATCCTGCAGGATGACGGGACAATCGGGGTCTTCGGACACATCAACGAGACTCTGGTAACCGCGGGTCAAAAGGTGC
GTGCCGGAGAATTGATTGCGACGGTAGGAAACAGAGGACAATCAACAGGGCCACATCTGCATTACGAGGTGTGGCAGGCA
GACGGCCAGAAGGTCGATCCCATGGCATGGTTGGACGCGCGCGGGGTACAGATTCAGCCTCCGGCCATCAGTGACTGA

Upstream 100 bases:

>100_bases
CCGACACCGCAAGCCCGACACCGACGATCTCGACTGCCCACTTCGGGAAAGTTATCTTTTCGGCACGCCACACAGCGATC
GAGACCTGCCAGTCGACACG

Downstream 100 bases:

>100_bases
CGCAATCGACGATTTTCGAAGGGGGAAGGAAGATGAAGAGGCTCGGCGGGCTCGAATCCGAAGTGATGGATCTCCTGTGG
GATGCAGAAGAGCCGCAGTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MYISTASAVDRESVAGSVQARRGGAHRRQSRSRPGGRALVLSVATGALLAAGTSASHASAGSVSAPVELDQQPLAPLDQA
LASAPEILQVPKLADLGRLAEQLARGTERDTDRASREATDRASREAAARQPLTMAPVSGTLTSNYGPRWGSTHYGLDIAN
EIGTPIVSVTDGTVLESGPASGFGLWVRILQDDGTIGVFGHINETLVTAGQKVRAGELIATVGNRGQSTGPHLHYEVWQA
DGQKVDPMAWLDARGVQIQPPAISD

Sequences:

>Translated_265_residues
MYISTASAVDRESVAGSVQARRGGAHRRQSRSRPGGRALVLSVATGALLAAGTSASHASAGSVSAPVELDQQPLAPLDQA
LASAPEILQVPKLADLGRLAEQLARGTERDTDRASREATDRASREAAARQPLTMAPVSGTLTSNYGPRWGSTHYGLDIAN
EIGTPIVSVTDGTVLESGPASGFGLWVRILQDDGTIGVFGHINETLVTAGQKVRAGELIATVGNRGQSTGPHLHYEVWQA
DGQKVDPMAWLDARGVQIQPPAISD
>Mature_265_residues
MYISTASAVDRESVAGSVQARRGGAHRRQSRSRPGGRALVLSVATGALLAAGTSASHASAGSVSAPVELDQQPLAPLDQA
LASAPEILQVPKLADLGRLAEQLARGTERDTDRASREATDRASREAAARQPLTMAPVSGTLTSNYGPRWGSTHYGLDIAN
EIGTPIVSVTDGTVLESGPASGFGLWVRILQDDGTIGVFGHINETLVTAGQKVRAGELIATVGNRGQSTGPHLHYEVWQA
DGQKVDPMAWLDARGVQIQPPAISD

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=115, Percent_Identity=40, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI87082297, Length=122, Percent_Identity=33.6065573770492, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1789099, Length=120, Percent_Identity=33.3333333333333, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 27639; Mature: 27639

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYISTASAVDRESVAGSVQARRGGAHRRQSRSRPGGRALVLSVATGALLAAGTSASHASA
CEECCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCEEEEEECCCHHHCCCCCCCCCCC
GSVSAPVELDQQPLAPLDQALASAPEILQVPKLADLGRLAEQLARGTERDTDRASREATD
CCCCCCCCCCCCCCCHHHHHHHCCCHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHH
RASREAAARQPLTMAPVSGTLTSNYGPRWGSTHYGLDIANEIGTPIVSVTDGTVLESGPA
HHHHHHHHCCCCEECCCCCCEECCCCCCCCCCCCCEEEHHHHCCCEEEECCCCEECCCCC
SGFGLWVRILQDDGTIGVFGHINETLVTAGQKVRAGELIATVGNRGQSTGPHLHYEVWQA
CCCEEEEEEEECCCCEEEEECCCHHHHHCCCCCCCCHHEEECCCCCCCCCCEEEEEEEEC
DGQKVDPMAWLDARGVQIQPPAISD
CCCCCCCCCEECCCCCEECCCCCCC
>Mature Secondary Structure
MYISTASAVDRESVAGSVQARRGGAHRRQSRSRPGGRALVLSVATGALLAAGTSASHASA
CEECCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCEEEEEECCCHHHCCCCCCCCCCC
GSVSAPVELDQQPLAPLDQALASAPEILQVPKLADLGRLAEQLARGTERDTDRASREATD
CCCCCCCCCCCCCCCHHHHHHHCCCHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHH
RASREAAARQPLTMAPVSGTLTSNYGPRWGSTHYGLDIANEIGTPIVSVTDGTVLESGPA
HHHHHHHHCCCCEECCCCCCEECCCCCCCCCCCCCEEEHHHHCCCEEEECCCCEECCCCC
SGFGLWVRILQDDGTIGVFGHINETLVTAGQKVRAGELIATVGNRGQSTGPHLHYEVWQA
CCCEEEEEEEECCCCEEEEECCCHHHHHCCCCCCCCHHEEECCCCCCCCCCEEEEEEEEC
DGQKVDPMAWLDARGVQIQPPAISD
CCCCCCCCCEECCCCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]