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The map label for this gene is ydhO [H]

Identifier: 77454647

GI number: 77454647

Start: 77927

End: 78874

Strand: Direct

Name: ydhO [H]

Synonym: pREL1_0080

Alternate gene names: 77454647

Gene position: 77927-78874 (Clockwise)

Preceding gene: 77454646

Following gene: 77454648

Centisome position: 28.69

GC content: 64.03

Gene sequence:

>948_bases
ATGGACATCGCATCACTCATCGTCGGCGTCGCAGTAGCCGGCGCATCGGCAGCGCAGGGAGCTGGCGTAGAGCCAGTCAT
CACCGACACCATCACCTCGGTAGTCGAGGAACAGGCACCGGCTGCCTCCCAGTTCATTCCAGATCCGCAGCCGTACCTGG
ACCAGGCAACAACTGCCCTGACGCAGCTGCAGGAGCAGATTCCTCCTGCGTGGCAGTCCGAGGCGGAAAGTGCGCTACCC
CCGGAACTGAAAGACGCTGCGGCGCAGATACAAGAGATCCTCCCGCCGCAGGCACAGGCTCTGATCCCCGACGTCGCCCT
TCCTGCTCCCGGACCGGACTCGGTTCCGCCGGCCGGCTCGGCGCCGAACGGATCCGCTGTCGAAGACGCATCGGCAAATG
ACACGACACCTGCCGGAGGGCCTGCGCTTCTGCCCTCCGTGTTCAGCGCACAACCATCTAACGCTGCCGGGATACCCTCG
CTCACAGGCCTGTTCGCACCGTCGGCGGTGCCGGATCTGAAGTTCGATCCCAACCTTCCTCGCAATGTTGAGTTCGCTCG
CGCTGTCATCGAAGCTGCGATGCGGGCACTCGGGCTTCCCTACCAGTGGGGCGGCGGTTTGTTGACCGGTCCGTCGATGG
GTGATGGAACGGGCGGCCCGATCGCCGGTTACGACTGCTCCGGACTGAGCCGCTTCGCGTACTTCATCGGAAGCGGCGGA
ACCAAGGTGCTGCCTCGGACGTCGCAGGAGCAGTTCCGCGCCGGACACCAGATTCCGATGAGCCAGGCACAGCCGGGTGA
CCTGCTGTTCGGGAATTGGCAGGCTGACGGCGCCAATCATGTCGCGATCTATCTCGGCGAGGGCAAGATGATCGAGGCAC
CTCAGACCGGTCAATTGGTGCAGATCAGCGCAGTCCGTTCGGACATGATCCCGGCCAGGTTCCTCTGA

Upstream 100 bases:

>100_bases
CCAGGTCCGTCTCTACTGTCCGGATCGCACTGAAAGTCCCCGCGGTCATCGAGACAGTTGTTCCCCTCGGCCGCACCAAC
ATCCGGCAAAGGAAGACATC

Downstream 100 bases:

>100_bases
TGACGGACCTATCTTCCACTGTGAGTAACTGCCGGGCCGAGCGGCCAGGTCGCAGTGTTTCGACGCTCAGTGGTGTCGGG
GCCGCCGCCCTGATCCCGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MDIASLIVGVAVAGASAAQGAGVEPVITDTITSVVEEQAPAASQFIPDPQPYLDQATTALTQLQEQIPPAWQSEAESALP
PELKDAAAQIQEILPPQAQALIPDVALPAPGPDSVPPAGSAPNGSAVEDASANDTTPAGGPALLPSVFSAQPSNAAGIPS
LTGLFAPSAVPDLKFDPNLPRNVEFARAVIEAAMRALGLPYQWGGGLLTGPSMGDGTGGPIAGYDCSGLSRFAYFIGSGG
TKVLPRTSQEQFRAGHQIPMSQAQPGDLLFGNWQADGANHVAIYLGEGKMIEAPQTGQLVQISAVRSDMIPARFL

Sequences:

>Translated_315_residues
MDIASLIVGVAVAGASAAQGAGVEPVITDTITSVVEEQAPAASQFIPDPQPYLDQATTALTQLQEQIPPAWQSEAESALP
PELKDAAAQIQEILPPQAQALIPDVALPAPGPDSVPPAGSAPNGSAVEDASANDTTPAGGPALLPSVFSAQPSNAAGIPS
LTGLFAPSAVPDLKFDPNLPRNVEFARAVIEAAMRALGLPYQWGGGLLTGPSMGDGTGGPIAGYDCSGLSRFAYFIGSGG
TKVLPRTSQEQFRAGHQIPMSQAQPGDLLFGNWQADGANHVAIYLGEGKMIEAPQTGQLVQISAVRSDMIPARFL
>Mature_315_residues
MDIASLIVGVAVAGASAAQGAGVEPVITDTITSVVEEQAPAASQFIPDPQPYLDQATTALTQLQEQIPPAWQSEAESALP
PELKDAAAQIQEILPPQAQALIPDVALPAPGPDSVPPAGSAPNGSAVEDASANDTTPAGGPALLPSVFSAQPSNAAGIPS
LTGLFAPSAVPDLKFDPNLPRNVEFARAVIEAAMRALGLPYQWGGGLLTGPSMGDGTGGPIAGYDCSGLSRFAYFIGSGG
TKVLPRTSQEQFRAGHQIPMSQAQPGDLLFGNWQADGANHVAIYLGEGKMIEAPQTGQLVQISAVRSDMIPARFL

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1787944, Length=126, Percent_Identity=35.7142857142857, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1786421, Length=116, Percent_Identity=35.3448275862069, Blast_Score=68, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 32203; Mature: 32203

Theoretical pI: Translated: 3.95; Mature: 3.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIASLIVGVAVAGASAAQGAGVEPVITDTITSVVEEQAPAASQFIPDPQPYLDQATTAL
CCHHHHHHHHHHHCCCHHCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHH
TQLQEQIPPAWQSEAESALPPELKDAAAQIQEILPPQAQALIPDVALPAPGPDSVPPAGS
HHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCC
APNGSAVEDASANDTTPAGGPALLPSVFSAQPSNAAGIPSLTGLFAPSAVPDLKFDPNLP
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCC
RNVEFARAVIEAAMRALGLPYQWGGGLLTGPSMGDGTGGPIAGYDCSGLSRFAYFIGSGG
CCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCC
TKVLPRTSQEQFRAGHQIPMSQAQPGDLLFGNWQADGANHVAIYLGEGKMIEAPQTGQLV
CEECCCCCHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCEEEEEECCCCEECCCCCCCEE
QISAVRSDMIPARFL
EEEHHHHHCCCCCCC
>Mature Secondary Structure
MDIASLIVGVAVAGASAAQGAGVEPVITDTITSVVEEQAPAASQFIPDPQPYLDQATTAL
CCHHHHHHHHHHHCCCHHCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHH
TQLQEQIPPAWQSEAESALPPELKDAAAQIQEILPPQAQALIPDVALPAPGPDSVPPAGS
HHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCC
APNGSAVEDASANDTTPAGGPALLPSVFSAQPSNAAGIPSLTGLFAPSAVPDLKFDPNLP
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCC
RNVEFARAVIEAAMRALGLPYQWGGGLLTGPSMGDGTGGPIAGYDCSGLSRFAYFIGSGG
CCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCC
TKVLPRTSQEQFRAGHQIPMSQAQPGDLLFGNWQADGANHVAIYLGEGKMIEAPQTGQLV
CEECCCCCHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCEEEEEECCCCEECCCCCCCEE
QISAVRSDMIPARFL
EEEHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]