| Definition | Nitrobacter winogradskyi Nb-255, complete genome. |
|---|---|
| Accession | NC_007406 |
| Length | 3,402,093 |
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The map label for this gene is trxA [C]
Identifier: 75674250
GI number: 75674250
Start: 62959
End: 63279
Strand: Direct
Name: trxA [C]
Synonym: Nwi_0051
Alternate gene names: 75674250
Gene position: 62959-63279 (Clockwise)
Preceding gene: 75674249
Following gene: 75674262
Centisome position: 1.85
GC content: 60.75
Gene sequence:
>321_bases ATGGCTGTTGGCAAGGTTTCGGACGCCAATTTCGAAGCGGAAGTGCTCAAGGCGACTGGCCCGGTCGTGGTTGATTTCTG GGCGGAGTGGTGCGGCCCCTGCCGCATGATCGGCCCGGTGCTGGACGAAATCTCCAGCGCCATGGGCAGCAAGGTCAAGA TCGTGAAGCTGAACGTCGACGAGAGCCCGAGGACGGCCTCGAAATACGGCGTGATGTCGATTCCCACTTTGATGATCTTC AAGGACGGCGAACTGGCCTCGCGTCAGGTCGGCGCGGCGCCCAAGCAGAAACTTGAGCAATGGATCACCGCCACGGTGTG A
Upstream 100 bases:
>100_bases TGTGAGAAACCTTGACCCGGGAAGATCGCCTTCTTAACTACATCCGCAGTTTCAAGCGCATTCTTTCGTCGCGCATCTCA TCGAGACAACGAGGTATTCC
Downstream 100 bases:
>100_bases TCTTTCCGCATTGAGATTTTTTTTCAAGCGGCCGGCGTCAATTCGCCGGCCGTTTTTGTTTGGGTAAGGAGAACGTTGAG GTCAGGGCGCACCCTCCCTT
Product: thioredoxin
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 106; Mature: 105
Protein sequence:
>106_residues MAVGKVSDANFEAEVLKATGPVVVDFWAEWCGPCRMIGPVLDEISSAMGSKVKIVKLNVDESPRTASKYGVMSIPTLMIF KDGELASRQVGAAPKQKLEQWITATV
Sequences:
>Translated_106_residues MAVGKVSDANFEAEVLKATGPVVVDFWAEWCGPCRMIGPVLDEISSAMGSKVKIVKLNVDESPRTASKYGVMSIPTLMIF KDGELASRQVGAAPKQKLEQWITATV >Mature_105_residues AVGKVSDANFEAEVLKATGPVVVDFWAEWCGPCRMIGPVLDEISSAMGSKVKIVKLNVDESPRTASKYGVMSIPTLMIFK DGELASRQVGAAPKQKLEQWITATV
Specific function: Participates in various redox reactions through the reversible oxidation of its active center dithiol to a disulfide and catalyzes dithiol-disulfide exchange reactions [H]
COG id: COG0526
COG function: function code OC; Thiol-disulfide isomerase and thioredoxins
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 thioredoxin domain [H]
Homologues:
Organism=Homo sapiens, GI21361403, Length=93, Percent_Identity=34.4086021505376, Blast_Score=78, Evalue=1e-15, Organism=Homo sapiens, GI21361657, Length=86, Percent_Identity=34.8837209302326, Blast_Score=64, Evalue=3e-11, Organism=Escherichia coli, GI87082331, Length=102, Percent_Identity=50, Blast_Score=125, Evalue=7e-31, Organism=Escherichia coli, GI1788936, Length=114, Percent_Identity=36.8421052631579, Blast_Score=98, Evalue=1e-22, Organism=Caenorhabditis elegans, GI212646193, Length=93, Percent_Identity=38.7096774193548, Blast_Score=83, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17509965, Length=90, Percent_Identity=34.4444444444444, Blast_Score=70, Evalue=1e-13, Organism=Caenorhabditis elegans, GI71998175, Length=79, Percent_Identity=36.7088607594937, Blast_Score=64, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17510299, Length=89, Percent_Identity=37.0786516853933, Blast_Score=64, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17507705, Length=106, Percent_Identity=30.188679245283, Blast_Score=62, Evalue=7e-11, Organism=Saccharomyces cerevisiae, GI6319925, Length=93, Percent_Identity=36.5591397849462, Blast_Score=74, Evalue=5e-15, Organism=Saccharomyces cerevisiae, GI6323072, Length=73, Percent_Identity=45.2054794520548, Blast_Score=72, Evalue=2e-14, Organism=Saccharomyces cerevisiae, GI6321648, Length=100, Percent_Identity=38, Blast_Score=71, Evalue=3e-14, Organism=Drosophila melanogaster, GI28573567, Length=97, Percent_Identity=34.020618556701, Blast_Score=81, Evalue=1e-16, Organism=Drosophila melanogaster, GI17648013, Length=106, Percent_Identity=39.622641509434, Blast_Score=78, Evalue=1e-15, Organism=Drosophila melanogaster, GI24583090, Length=106, Percent_Identity=39.622641509434, Blast_Score=78, Evalue=1e-15, Organism=Drosophila melanogaster, GI24639826, Length=77, Percent_Identity=40.2597402597403, Blast_Score=75, Evalue=1e-14, Organism=Drosophila melanogaster, GI21358065, Length=100, Percent_Identity=32, Blast_Score=68, Evalue=1e-12, Organism=Drosophila melanogaster, GI24664269, Length=61, Percent_Identity=44.2622950819672, Blast_Score=67, Evalue=3e-12,
Paralogues:
None
Copy number: 3,500 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005746 - InterPro: IPR017936 - InterPro: IPR012336 - InterPro: IPR017937 - InterPro: IPR013766 - InterPro: IPR012335 [H]
Pfam domain/function: PF00085 Thioredoxin [H]
EC number: NA
Molecular weight: Translated: 11427; Mature: 11296
Theoretical pI: Translated: 6.62; Mature: 6.62
Prosite motif: PS00194 THIOREDOXIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 4.7 %Met (Translated Protein) 6.6 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 5.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVGKVSDANFEAEVLKATGPVVVDFWAEWCGPCRMIGPVLDEISSAMGSKVKIVKLNVD CCCCCCCCCCCCCEEECCCCCEEEEEHHHHCCCHHHHHHHHHHHHHHCCCEEEEEEEECC ESPRTASKYGVMSIPTLMIFKDGELASRQVGAAPKQKLEQWITATV CCCCCCCCCCCEECCEEEEEECCCCCHHHCCCCCHHHHHHHHHCCC >Mature Secondary Structure AVGKVSDANFEAEVLKATGPVVVDFWAEWCGPCRMIGPVLDEISSAMGSKVKIVKLNVD CCCCCCCCCCCCEEECCCCCEEEEEHHHHCCCHHHHHHHHHHHHHHCCCEEEEEEEECC ESPRTASKYGVMSIPTLMIFKDGELASRQVGAAPKQKLEQWITATV CCCCCCCCCCCEECCEEEEEECCCCCHHHCCCCCHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Reduction reactions; participates in dithiol-disulfide exchange reactions [C]
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7021558 [H]