Click here to switch to the map view.

The map label for this gene is ccsA [H]

Identifier: 73542829

GI number: 73542829

Start: 3454765

End: 3455970

Strand: Reverse

Name: ccsA [H]

Synonym: Reut_A3145

Alternate gene names: 73542829

Gene position: 3455970-3454765 (Counterclockwise)

Preceding gene: 73542830

Following gene: 73542828

Centisome position: 90.79

GC content: 63.6

Gene sequence:

>1206_bases
ATGTCTTCTAACTTGAACCAGGCCGCCCGGCCGGCCATGCGCCCGGCGACTTCTGCTGATTCCGGCGCACTGGACGAGTC
CTACCTCGAACCCTCCTTTCTGCGCCGGCTCACGTGGCTGGACTGGGCCTTCGCCGTGCTGCTGGCAGTCGGCGCCGGCG
TGGCGCTGTCGCGCTACGGCCAGTGGATGAACGGCTATGACAAGGCCGTGCTGATTGCCGCGGTGCCGACTTTCGCGCTG
CTCGGCTGGCACTGGAAGCCCGTGCGCCCGCTCATGGTCGGGCTCGCCGTGCTGTCGCTGTTCGCCGTGCAGCTATACCA
GGGCCAGCTCGCGCGTGCCGACCAGGCGTTCTTCCTGAAGTATTTCCTGTCCAGCCAGTCGGCCATCTTGTGGATGAGCG
CGCTAGTGTTCTTGTCCACGCTGTTCTACTGGGTGGGACTGGCCACGCGCTCGGCGACCGGCTATAGCATCGGCAGCAAG
CTGTGCTGGGCCGCGGTGGTACTCGGTTTCACGGGCATGCTGGTGCGCTGGTACGAGTCGTATCTGGTCGGCACCGATAT
TGGCCATATCCCGATCTCGAACCTCTATGAAGTGTTCGTGCTATTCACGCTGATCACGTCACTGTTCTATCTCTACTACG
AAGGCCGTTACGCGACGCGTGCGCTCGGCCCGTTCGTGATGCTGGTGGTGTCGGCCGCAGTGGGTTTCCTGCTTTGGTAC
ACGGTCAGCCGCAATGCGCAGGAGATCCAGCCGCTGGTGCCGGCGCTGCAGAGCTGGTGGATGAAGATCCACGTGCCGGC
CAACTTCATCGGTTACGGCACGTTTGCGCTCGCGGCGATGGTTTCGGTGGCCTACCTGCTCAAGCAGCGCGGCATCCTGG
CCGAGCGCCTGCCGTCGCTCGAAGTGCTAGACGATGTGATGTACAAGGCCATCGCGGTCGGCTTTGCGTTTTTCACCATC
GCCACCATCCTCGGTGCGCTGTGGGCGGCGGAAGCGTGGGGCGGCTACTGGAGCTGGGATCCGAAGGAAACCTGGGCGCT
GATCGTCTGGCTGAACTATGCGGCCTGGCTGCACATGCGGCTGATGAAGGGGCTGCGCGGCACTGTCGCAGCATGGTGGG
CGCTGATGGGCCTGCTGGTGACAACGTTCGCCTTCCTGGGCGTCAACATGTTCCTGTCCGGCCTGCACAGCTACGGCGAA
TTGTGA

Upstream 100 bases:

>100_bases
CAGCATTGAACCCGTCGGGCCGGACCGTGGTGATCGTCTCCGGTTGCCGCCCGGCTTTTGTGGCGCAGCCTCAGGCTGCG
TGCAGATCGCAGGTAACGCT

Downstream 100 bases:

>100_bases
TTCATGCGGCTTCCGCATCAATGAAGAGAACCTGCCCTGCCGGCAGGTTTTTTTTCGCCCGCAGGGAATAAACGCATCAC
ATCCGGTGTTTACTTGAGGA

Product: cytochrome c assembly protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 401; Mature: 400

Protein sequence:

>401_residues
MSSNLNQAARPAMRPATSADSGALDESYLEPSFLRRLTWLDWAFAVLLAVGAGVALSRYGQWMNGYDKAVLIAAVPTFAL
LGWHWKPVRPLMVGLAVLSLFAVQLYQGQLARADQAFFLKYFLSSQSAILWMSALVFLSTLFYWVGLATRSATGYSIGSK
LCWAAVVLGFTGMLVRWYESYLVGTDIGHIPISNLYEVFVLFTLITSLFYLYYEGRYATRALGPFVMLVVSAAVGFLLWY
TVSRNAQEIQPLVPALQSWWMKIHVPANFIGYGTFALAAMVSVAYLLKQRGILAERLPSLEVLDDVMYKAIAVGFAFFTI
ATILGALWAAEAWGGYWSWDPKETWALIVWLNYAAWLHMRLMKGLRGTVAAWWALMGLLVTTFAFLGVNMFLSGLHSYGE
L

Sequences:

>Translated_401_residues
MSSNLNQAARPAMRPATSADSGALDESYLEPSFLRRLTWLDWAFAVLLAVGAGVALSRYGQWMNGYDKAVLIAAVPTFAL
LGWHWKPVRPLMVGLAVLSLFAVQLYQGQLARADQAFFLKYFLSSQSAILWMSALVFLSTLFYWVGLATRSATGYSIGSK
LCWAAVVLGFTGMLVRWYESYLVGTDIGHIPISNLYEVFVLFTLITSLFYLYYEGRYATRALGPFVMLVVSAAVGFLLWY
TVSRNAQEIQPLVPALQSWWMKIHVPANFIGYGTFALAAMVSVAYLLKQRGILAERLPSLEVLDDVMYKAIAVGFAFFTI
ATILGALWAAEAWGGYWSWDPKETWALIVWLNYAAWLHMRLMKGLRGTVAAWWALMGLLVTTFAFLGVNMFLSGLHSYGE
L
>Mature_400_residues
SSNLNQAARPAMRPATSADSGALDESYLEPSFLRRLTWLDWAFAVLLAVGAGVALSRYGQWMNGYDKAVLIAAVPTFALL
GWHWKPVRPLMVGLAVLSLFAVQLYQGQLARADQAFFLKYFLSSQSAILWMSALVFLSTLFYWVGLATRSATGYSIGSKL
CWAAVVLGFTGMLVRWYESYLVGTDIGHIPISNLYEVFVLFTLITSLFYLYYEGRYATRALGPFVMLVVSAAVGFLLWYT
VSRNAQEIQPLVPALQSWWMKIHVPANFIGYGTFALAAMVSVAYLLKQRGILAERLPSLEVLDDVMYKAIAVGFAFFTIA
TILGALWAAEAWGGYWSWDPKETWALIVWLNYAAWLHMRLMKGLRGTVAAWWALMGLLVTTFAFLGVNMFLSGLHSYGEL

Specific function: Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment [H]

COG id: COG0755

COG function: function code O; ABC-type transport system involved in cytochrome c biogenesis, permease component

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

Organism=Escherichia coli, GI1790511, Length=154, Percent_Identity=31.1688311688312, Blast_Score=62, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR017562 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 44739; Mature: 44608

Theoretical pI: Translated: 9.32; Mature: 9.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SSNLNQAARPAMRPATSADSGALDESYLEPSFLRRLTWLDWAFAVLLAVGAGVALSRYG
CCCCCHHHCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
QWMNGYDKAVLIAAVPTFALLGWHWKPVRPLMVGLAVLSLFAVQLYQGQLARADQAFFLK
HHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YFLSSQSAILWMSALVFLSTLFYWVGLATRSATGYSIGSKLCWAAVVLGFTGMLVRWYES
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
YLVGTDIGHIPISNLYEVFVLFTLITSLFYLYYEGRYATRALGPFVMLVVSAAVGFLLWY
HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
TVSRNAQEIQPLVPALQSWWMKIHVPANFIGYGTFALAAMVSVAYLLKQRGILAERLPSL
HHCCCHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCH
EVLDDVMYKAIAVGFAFFTIATILGALWAAEAWGGYWSWDPKETWALIVWLNYAAWLHMR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
LMKGLRGTVAAWWALMGLLVTTFAFLGVNMFLSGLHSYGEL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA