Click here to switch to the map view.

The map label for this gene is thcR [H]

Identifier: 73542763

GI number: 73542763

Start: 3389731

End: 3390741

Strand: Reverse

Name: thcR [H]

Synonym: Reut_A3079

Alternate gene names: 73542763

Gene position: 3390741-3389731 (Counterclockwise)

Preceding gene: 73542766

Following gene: 73542757

Centisome position: 89.08

GC content: 67.06

Gene sequence:

>1011_bases
ATGCCAGCCATTCCAGCCATTCCAGCCAATCGAGCCTTTCCCGCTGCATCGAACAGCCCCGGCCGAGCTAGTGATGCGCA
ACGCATCCAGTCGCTGTCCGGCCGTGTGTTCGGGCCCACGCGGCTGCGCGCGGCCGAGGATGACGCTGCGCTCGACGCGC
GCATCGATACCTGTGCGATTGGCCGCCTGACGCTGGTGACCATCGGCTACAACCAGGCCGTGGATATCGAGCCGCAGCAG
GGCAAGGACGAGTTCGTGATCCAGACGCTGCTTGCGGGACGCTGCCGCGTGCATGCGCCGCACGGCACGGTTGAGATGCC
GCCGGGCGCGACGTTCGTGTTTTCGCCCACGGTGCCGGCGAGCCTGTCGCTCGACCGCGATTGCGAGCGCTTCAGTGTGG
TGATCCGCCGGCAGCTGATCGAGGAAGCGTTCCGCCTGCAGTTCGGCTTCGATCCGCCAACGCCGATCGAGTTCGACATG
CAGCCGGTCGCAGATGATGGCCGCGCCGAGCGCTGGCAGGCCCTGGTGGCATACCTGCGCGCAGAAACGCGCGTGCGGCG
CGAAGGCACCGGCGCGCCCGCGATGGATGCAAGCATCGAACGCATCGTGCTGTCCACGCTGCTGCTCGACCGCTTCGCCG
CAGACGGTGGCATGTTGCCGAGTCGCTTTGCGCCGGCGTTGCCGGGCTATGTCCGCTGCGCGATCGCGTATCTCCGCACG
CACCTGGATCAGCCGCTCACGCTGGAGCAGGTGGCAGCGCATTGCGGTGTTTCGGCGCGCACGCTGCAGCTCGGGTTCCG
CAAGAGCAAGAACACGACGCCCATGGAATATCTGCGGCTGTTGCGCCTGCAGGCGGCCCGTGCGGACTTGCAGCGCGTAC
CGCAGGAAAAAGGGATGGTCAGCGCCATTGCGTTGCGCCATGGCTTCACGCACCTGAGCCTGTTCTCGCGCGAGTACCGC
AAGGCGTTCGGCGAACTGCCGTCGGATACCTTGCAGGCGCCGCGGGGCTGA

Upstream 100 bases:

>100_bases
CGGCATCAGGGGTTTCCCTTGGCTTGCGGTGATCGGGTACGGACCCTAGGATGGACACGACGCTTCCACGCAGCTTTCCT
TGCCTGCACCCGCTTCCCGC

Downstream 100 bases:

>100_bases
AGCGGTCTCCACGACAGAGACGCGCTTCAGCCGGTTAACCCGCCAGGGACATTACGCCGCTTCTGCTACGCGCACCGGCA
TGCAAACGTTCAGCAGTGTC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 336; Mature: 335

Protein sequence:

>336_residues
MPAIPAIPANRAFPAASNSPGRASDAQRIQSLSGRVFGPTRLRAAEDDAALDARIDTCAIGRLTLVTIGYNQAVDIEPQQ
GKDEFVIQTLLAGRCRVHAPHGTVEMPPGATFVFSPTVPASLSLDRDCERFSVVIRRQLIEEAFRLQFGFDPPTPIEFDM
QPVADDGRAERWQALVAYLRAETRVRREGTGAPAMDASIERIVLSTLLLDRFAADGGMLPSRFAPALPGYVRCAIAYLRT
HLDQPLTLEQVAAHCGVSARTLQLGFRKSKNTTPMEYLRLLRLQAARADLQRVPQEKGMVSAIALRHGFTHLSLFSREYR
KAFGELPSDTLQAPRG

Sequences:

>Translated_336_residues
MPAIPAIPANRAFPAASNSPGRASDAQRIQSLSGRVFGPTRLRAAEDDAALDARIDTCAIGRLTLVTIGYNQAVDIEPQQ
GKDEFVIQTLLAGRCRVHAPHGTVEMPPGATFVFSPTVPASLSLDRDCERFSVVIRRQLIEEAFRLQFGFDPPTPIEFDM
QPVADDGRAERWQALVAYLRAETRVRREGTGAPAMDASIERIVLSTLLLDRFAADGGMLPSRFAPALPGYVRCAIAYLRT
HLDQPLTLEQVAAHCGVSARTLQLGFRKSKNTTPMEYLRLLRLQAARADLQRVPQEKGMVSAIALRHGFTHLSLFSREYR
KAFGELPSDTLQAPRG
>Mature_335_residues
PAIPAIPANRAFPAASNSPGRASDAQRIQSLSGRVFGPTRLRAAEDDAALDARIDTCAIGRLTLVTIGYNQAVDIEPQQG
KDEFVIQTLLAGRCRVHAPHGTVEMPPGATFVFSPTVPASLSLDRDCERFSVVIRRQLIEEAFRLQFGFDPPTPIEFDMQ
PVADDGRAERWQALVAYLRAETRVRREGTGAPAMDASIERIVLSTLLLDRFAADGGMLPSRFAPALPGYVRCAIAYLRTH
LDQPLTLEQVAAHCGVSARTLQLGFRKSKNTTPMEYLRLLRLQAARADLQRVPQEKGMVSAIALRHGFTHLSLFSREYRK
AFGELPSDTLQAPRG

Specific function: Probably involved in the positive regulation of the thc operon for the degradation of the thiocarbamate herbicide EPTC [H]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 36916; Mature: 36785

Theoretical pI: Translated: 8.99; Mature: 8.99

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAIPAIPANRAFPAASNSPGRASDAQRIQSLSGRVFGPTRLRAAEDDAALDARIDTCAI
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCCCCHHHHCCCCCEEC
GRLTLVTIGYNQAVDIEPQQGKDEFVIQTLLAGRCRVHAPHGTVEMPPGATFVFSPTVPA
CCEEEEEECCCCEECCCCCCCCHHHHHHHHHHCCCEEECCCCCEECCCCCEEEECCCCCC
SLSLDRDCERFSVVIRRQLIEEAFRLQFGFDPPTPIEFDMQPVADDGRAERWQALVAYLR
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
AETRVRREGTGAPAMDASIERIVLSTLLLDRFAADGGMLPSRFAPALPGYVRCAIAYLRT
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHHHH
HLDQPLTLEQVAAHCGVSARTLQLGFRKSKNTTPMEYLRLLRLQAARADLQRVPQEKGMV
HCCCCCCHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCHHCCHH
SAIALRHGFTHLSLFSREYRKAFGELPSDTLQAPRG
HHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHCCCCC
>Mature Secondary Structure 
PAIPAIPANRAFPAASNSPGRASDAQRIQSLSGRVFGPTRLRAAEDDAALDARIDTCAI
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHCCCCCCCHHHHCCCCCEEC
GRLTLVTIGYNQAVDIEPQQGKDEFVIQTLLAGRCRVHAPHGTVEMPPGATFVFSPTVPA
CCEEEEEECCCCEECCCCCCCCHHHHHHHHHHCCCEEECCCCCEECCCCCEEEECCCCCC
SLSLDRDCERFSVVIRRQLIEEAFRLQFGFDPPTPIEFDMQPVADDGRAERWQALVAYLR
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
AETRVRREGTGAPAMDASIERIVLSTLLLDRFAADGGMLPSRFAPALPGYVRCAIAYLRT
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHHHH
HLDQPLTLEQVAAHCGVSARTLQLGFRKSKNTTPMEYLRLLRLQAARADLQRVPQEKGMV
HCCCCCCHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCHHCCHH
SAIALRHGFTHLSLFSREYRKAFGELPSDTLQAPRG
HHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7836301 [H]