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The map label for this gene is ypjD [C]

Identifier: 73542630

GI number: 73542630

Start: 3231821

End: 3232768

Strand: Reverse

Name: ypjD [C]

Synonym: Reut_A2946

Alternate gene names: 73542630

Gene position: 3232768-3231821 (Counterclockwise)

Preceding gene: 73542633

Following gene: 73542629

Centisome position: 84.93

GC content: 66.98

Gene sequence:

>948_bases
ATGGTCATTGTACTGTATGCCCTGACGGCACTTCTCTATTGCGGCCTGGCCTTGCACGGCTGGGTGACGCGCAATCCCCG
GCTCGCCGCCGCCGGTGGCCCCGCTGGCGGCGCGGCGTCGGCTGTACTGACGGCCAACGGCGGCCCTGCGGGCGTCGCGG
GAGGACGCGGCGAGGCGCAGCCGGGCTGGTGGCACCTGCTGATGGCGGCCGTGCTGACCAGCCACGGCATGTTGCTGCAT
GAAACCATCTTCCCGGCCGACCGCATGATGTTCGGCTTCGCCTTCGCCCTCTCGGCCATGCTGTGGCTCGGCGTGGGAAT
CTACTGGATCGAAAGCTTCTTCTTCTCGCTAGCCGGCTTGGGACTGATCGTGATCCCGGTGGCTCTCGTCGCCAGCCTGA
TGCCGCTGGCCTTTCCGGGCTCGCAGATCCTGGGCTATGCCGCGCAGCCGCTGTTCAAGCTGCATTTCATCATCGCCAAC
GTCGCCTATGGCTTGTTCACGCTGGCGGCGTTCCACGCGTTCCTGATGCTGATGGCCGAGCGCCGCCTGCACGGCTTCAA
GCACACACCCGCGCGTCCGGGCAATGGCACGGCCAAGGCGCCGGCCAACGAGTGGCTGGGTCGCTGGCTGGACCTGCTGC
CGCCGCTGCTGACGCTTGAAAAGCTGCTGTTCCGGCTCATCGGCGCCGGCTTTGTGCTGCTGACGCTGACCATCGCCTCC
GGCCTGTTGTTCTCGGAGGAACTATTCGGCCGCGCGTTCCGGCTCGACCACAAGACCGTGTTCGCGCTGATTTCGTGGGC
GATGTTCGGCGGCATCCTGGCCGGGCGGCACTTCCGCGGCTGGCGCGGCCGCGTGGCGCTGCGCTGGGTCATTGCCTCGT
TCGGCATCCTGCTGCTGGCCTACGTCGGCAGCCGCTTCGTGATTGAAGTGATCCTGCACCGGCTCTGA

Upstream 100 bases:

>100_bases
CCAGCATGGCAGGAATGGGGGAAGAAAGGGCTGTGTTGCGGCCTTTGTTACCGCGTTAGCCGCCCGCCACTGGCAGGAGG
CACTAAGGTAAACTGCGCAA

Downstream 100 bases:

>100_bases
GACCGCCATGGCAAGAATCTTCATTCTGCTGGCCGTGGTGCTGGGGGTGTTCTGGTGGCTGCGCTCGCGCGCCGAAGCGC
AGCGCGAGCAGACTTCCCGC

Product: cytochrome c assembly protein

Products: NA

Alternate protein names: ORF5 [H]

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MVIVLYALTALLYCGLALHGWVTRNPRLAAAGGPAGGAASAVLTANGGPAGVAGGRGEAQPGWWHLLMAAVLTSHGMLLH
ETIFPADRMMFGFAFALSAMLWLGVGIYWIESFFFSLAGLGLIVIPVALVASLMPLAFPGSQILGYAAQPLFKLHFIIAN
VAYGLFTLAAFHAFLMLMAERRLHGFKHTPARPGNGTAKAPANEWLGRWLDLLPPLLTLEKLLFRLIGAGFVLLTLTIAS
GLLFSEELFGRAFRLDHKTVFALISWAMFGGILAGRHFRGWRGRVALRWVIASFGILLLAYVGSRFVIEVILHRL

Sequences:

>Translated_315_residues
MVIVLYALTALLYCGLALHGWVTRNPRLAAAGGPAGGAASAVLTANGGPAGVAGGRGEAQPGWWHLLMAAVLTSHGMLLH
ETIFPADRMMFGFAFALSAMLWLGVGIYWIESFFFSLAGLGLIVIPVALVASLMPLAFPGSQILGYAAQPLFKLHFIIAN
VAYGLFTLAAFHAFLMLMAERRLHGFKHTPARPGNGTAKAPANEWLGRWLDLLPPLLTLEKLLFRLIGAGFVLLTLTIAS
GLLFSEELFGRAFRLDHKTVFALISWAMFGGILAGRHFRGWRGRVALRWVIASFGILLLAYVGSRFVIEVILHRL
>Mature_315_residues
MVIVLYALTALLYCGLALHGWVTRNPRLAAAGGPAGGAASAVLTANGGPAGVAGGRGEAQPGWWHLLMAAVLTSHGMLLH
ETIFPADRMMFGFAFALSAMLWLGVGIYWIESFFFSLAGLGLIVIPVALVASLMPLAFPGSQILGYAAQPLFKLHFIIAN
VAYGLFTLAAFHAFLMLMAERRLHGFKHTPARPGNGTAKAPANEWLGRWLDLLPPLLTLEKLLFRLIGAGFVLLTLTIAS
GLLFSEELFGRAFRLDHKTVFALISWAMFGGILAGRHFRGWRGRVALRWVIASFGILLLAYVGSRFVIEVILHRL

Specific function: Unknown

COG id: COG4137

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Integral membrane protein (Potential) [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 34089; Mature: 34089

Theoretical pI: Translated: 11.01; Mature: 11.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVIVLYALTALLYCGLALHGWVTRNPRLAAAGGPAGGAASAVLTANGGPAGVAGGRGEAQ
CEEHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCEEEECCCCCCCCCCCCCCCC
PGWWHLLMAAVLTSHGMLLHETIFPADRMMFGFAFALSAMLWLGVGIYWIESFFFSLAGL
CHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLIVIPVALVASLMPLAFPGSQILGYAAQPLFKLHFIIANVAYGLFTLAAFHAFLMLMAE
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRLHGFKHTPARPGNGTAKAPANEWLGRWLDLLPPLLTLEKLLFRLIGAGFVLLTLTIAS
HHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
GLLFSEELFGRAFRLDHKTVFALISWAMFGGILAGRHFRGWRGRVALRWVIASFGILLLA
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
YVGSRFVIEVILHRL
HHHHHHHHHHHHHHC
>Mature Secondary Structure
MVIVLYALTALLYCGLALHGWVTRNPRLAAAGGPAGGAASAVLTANGGPAGVAGGRGEAQ
CEEHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCEEEECCCCCCCCCCCCCCCC
PGWWHLLMAAVLTSHGMLLHETIFPADRMMFGFAFALSAMLWLGVGIYWIESFFFSLAGL
CHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLIVIPVALVASLMPLAFPGSQILGYAAQPLFKLHFIIANVAYGLFTLAAFHAFLMLMAE
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRLHGFKHTPARPGNGTAKAPANEWLGRWLDLLPPLLTLEKLLFRLIGAGFVLLTLTIAS
HHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
GLLFSEELFGRAFRLDHKTVFALISWAMFGGILAGRHFRGWRGRVALRWVIASFGILLLA
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
YVGSRFVIEVILHRL
HHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7553451 [H]