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The map label for this gene is lysM [H]

Identifier: 73542358

GI number: 73542358

Start: 2936917

End: 2937339

Strand: Direct

Name: lysM [H]

Synonym: Reut_A2673

Alternate gene names: 73542358

Gene position: 2936917-2937339 (Clockwise)

Preceding gene: 73542355

Following gene: 73542360

Centisome position: 77.15

GC content: 66.67

Gene sequence:

>423_bases
ATGGATGCCATCGACCAACAACTGCTGTCCCTGCTTCGCGACAACGCGCGCACGCCGGTCACGGCGCTCGCGCAGGCGCT
GCGCGTGTCGCGCGCGACCGTGCAGAACCGCATCGACAAGTTGGAGAAGGAAGGACTGATCGTCGGCTATACGGTGCGGC
TGCGGCCGGAAGCCGAGCCGCACCGCATCCGCGCATGGATGACGGTGGCGGTGGAAGGCAACAAGGCCCGCGCCGTGCTG
CAGGCCTTGCGCGGCGAACCGAATGTGCAGGCGCTGCACACCACCAACGGCCGCTGGGACATCATTGCGGAACTGCGCGC
CGACACGCTCGAAGCGTTCGACCGCACGCTGGACCGGATCCGGCTGATCGACGGGATCAGCGCCACCGAGACCAGCATCC
TGCTGTCGACTTACAAGCTGTAG

Upstream 100 bases:

>100_bases
ATTTTCGTGCGGCCCGGTGTTAACTAATAGCCAGCAACTTGCGCAGAATGCTGAGGCGAATGTACAAATCGCCAGCCATC
GCAATCAAAACGCCAACCCA

Downstream 100 bases:

>100_bases
CGGTTGCGAAGACGCTTAGCTTGCGAGTTGTTGTTGCGAGCCGCGCAGGCGCTCCCGCCGGAATTCCTCGTGGAAGACCT
GGCCGCTCGGCTGCAGCAGG

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 140; Mature: 140

Protein sequence:

>140_residues
MDAIDQQLLSLLRDNARTPVTALAQALRVSRATVQNRIDKLEKEGLIVGYTVRLRPEAEPHRIRAWMTVAVEGNKARAVL
QALRGEPNVQALHTTNGRWDIIAELRADTLEAFDRTLDRIRLIDGISATETSILLSTYKL

Sequences:

>Translated_140_residues
MDAIDQQLLSLLRDNARTPVTALAQALRVSRATVQNRIDKLEKEGLIVGYTVRLRPEAEPHRIRAWMTVAVEGNKARAVL
QALRGEPNVQALHTTNGRWDIIAELRADTLEAFDRTLDRIRLIDGISATETSILLSTYKL
>Mature_140_residues
MDAIDQQLLSLLRDNARTPVTALAQALRVSRATVQNRIDKLEKEGLIVGYTVRLRPEAEPHRIRAWMTVAVEGNKARAVL
QALRGEPNVQALHTTNGRWDIIAELRADTLEAFDRTLDRIRLIDGISATETSILLSTYKL

Specific function: In the absence or at low concentrations of lysine, activates the biosynthesis of this amino acid via the diaminopimelate pathway [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790182, Length=137, Percent_Identity=27.007299270073, Blast_Score=61, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 15711; Mature: 15711

Theoretical pI: Translated: 9.80; Mature: 9.80

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAIDQQLLSLLRDNARTPVTALAQALRVSRATVQNRIDKLEKEGLIVGYTVRLRPEAEP
CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEECCCCCC
HRIRAWMTVAVEGNKARAVLQALRGEPNVQALHTTNGRWDIIAELRADTLEAFDRTLDRI
CEEEEEEEEEEECCHHHHHHHHHCCCCCCEEEEECCCCEEHHHHHHHHHHHHHHHHHHHH
RLIDGISATETSILLSTYKL
HHHCCCCCCHHHHHHEECCC
>Mature Secondary Structure
MDAIDQQLLSLLRDNARTPVTALAQALRVSRATVQNRIDKLEKEGLIVGYTVRLRPEAEP
CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEECCCCCC
HRIRAWMTVAVEGNKARAVLQALRGEPNVQALHTTNGRWDIIAELRADTLEAFDRTLDRI
CEEEEEEEEEEECCHHHHHHHHHCCCCCCEEEEECCCCEEHHHHHHHHHHHHHHHHHHHH
RLIDGISATETSILLSTYKL
HHHCCCCCCHHHHHHEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11427726; 12042311 [H]