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The map label for this gene is yijC [C]

Identifier: 73541675

GI number: 73541675

Start: 2178704

End: 2179339

Strand: Reverse

Name: yijC [C]

Synonym: Reut_A1987

Alternate gene names: 73541675

Gene position: 2179339-2178704 (Counterclockwise)

Preceding gene: 73541676

Following gene: 73541674

Centisome position: 57.25

GC content: 63.05

Gene sequence:

>636_bases
ATGTCCCAGACCGACTCCGGCAGGACTGAATCCGCCAGGACTGAATCCGGCATCTGCCCGCCCAAGACCCCGCGCGGGCA
GAAAACCCGCGAGTCCCTGCTGCGTGCCGCCGAGAAGGTGTTCGGCGAGAAAGGCTACTACGTCGCATCGATTTCCGAGA
TCACGCAGGAAGCCAAGGTGGCCATGGGCACCTTCTACCTGTACTTCAAGGACAAGGAAGATGTCTTCCGCGCGCTGGTC
CAGCACATGCTCGAGCTGCTGCGCACCCACCTGCGCAAGCACGTGGCGCCGGCCACCAGCCAGATCGAGGCCGAACGGCT
GGGCCTGAAGGCGTTCCTGTCCTTCGTTTCCCGACACAAGAACCTCTACCGGATCGTGCTCGATTCGTATTCGGTGGACG
AGACCATCTACAGCGGCTACTTCCAGGTCTTTGCCGATCTCTACAGCCGGCGCCTGAGCCGTGCGGCAGAGCAGGGCGAG
TTCCGACCCGGCGACGCCGAGGTGCGCGCCTGGTGCCTGATCGGCATCAGCAATTTCCTGGGTATGCGCTATGCGCTGTG
GAAACGGCCGGCATCGATGGAGAAGGTGGTCGATGCCGCGTTCGACATGATCACGCACGGGCTGCAAGCGCGGTGA

Upstream 100 bases:

>100_bases
TTCGCAGGGCCGCTCCGGGCAGAGGAGGCCGGACGGCGGGCAGGGCGCGGGACACAGCTTGCACACACAGAGGGCGCCCG
AGCGCCACAGTGGAGACACG

Downstream 100 bases:

>100_bases
TGGCTGGCGGCGGCCGAGATACCGAAGCGACAAGAAAAAGAGGAGACAACCATGCAACGCAGAACGATCGCCATACATGC
CCTGGCGCTGGCCGCCGGCT

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Regulatory Protein TetR; Transcriptional Regulator TetR Family Protein; TetR/AcrR Family Transcriptional Regulator; Transcriptional Regulator Tetr Family

Number of amino acids: Translated: 211; Mature: 210

Protein sequence:

>211_residues
MSQTDSGRTESARTESGICPPKTPRGQKTRESLLRAAEKVFGEKGYYVASISEITQEAKVAMGTFYLYFKDKEDVFRALV
QHMLELLRTHLRKHVAPATSQIEAERLGLKAFLSFVSRHKNLYRIVLDSYSVDETIYSGYFQVFADLYSRRLSRAAEQGE
FRPGDAEVRAWCLIGISNFLGMRYALWKRPASMEKVVDAAFDMITHGLQAR

Sequences:

>Translated_211_residues
MSQTDSGRTESARTESGICPPKTPRGQKTRESLLRAAEKVFGEKGYYVASISEITQEAKVAMGTFYLYFKDKEDVFRALV
QHMLELLRTHLRKHVAPATSQIEAERLGLKAFLSFVSRHKNLYRIVLDSYSVDETIYSGYFQVFADLYSRRLSRAAEQGE
FRPGDAEVRAWCLIGISNFLGMRYALWKRPASMEKVVDAAFDMITHGLQAR
>Mature_210_residues
SQTDSGRTESARTESGICPPKTPRGQKTRESLLRAAEKVFGEKGYYVASISEITQEAKVAMGTFYLYFKDKEDVFRALVQ
HMLELLRTHLRKHVAPATSQIEAERLGLKAFLSFVSRHKNLYRIVLDSYSVDETIYSGYFQVFADLYSRRLSRAAEQGEF
RPGDAEVRAWCLIGISNFLGMRYALWKRPASMEKVVDAAFDMITHGLQAR

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24048; Mature: 23917

Theoretical pI: Translated: 9.62; Mature: 9.62

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQTDSGRTESARTESGICPPKTPRGQKTRESLLRAAEKVFGEKGYYVASISEITQEAKV
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHH
AMGTFYLYFKDKEDVFRALVQHMLELLRTHLRKHVAPATSQIEAERLGLKAFLSFVSRHK
HHHHEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
NLYRIVLDSYSVDETIYSGYFQVFADLYSRRLSRAAEQGEFRPGDAEVRAWCLIGISNFL
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
GMRYALWKRPASMEKVVDAAFDMITHGLQAR
HHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SQTDSGRTESARTESGICPPKTPRGQKTRESLLRAAEKVFGEKGYYVASISEITQEAKV
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHH
AMGTFYLYFKDKEDVFRALVQHMLELLRTHLRKHVAPATSQIEAERLGLKAFLSFVSRHK
HHHHEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
NLYRIVLDSYSVDETIYSGYFQVFADLYSRRLSRAAEQGEFRPGDAEVRAWCLIGISNFL
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
GMRYALWKRPASMEKVVDAAFDMITHGLQAR
HHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA