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The map label for this gene is yfdE [H]

Identifier: 73541605

GI number: 73541605

Start: 2101501

End: 2102652

Strand: Reverse

Name: yfdE [H]

Synonym: Reut_A1916

Alternate gene names: 73541605

Gene position: 2102652-2101501 (Counterclockwise)

Preceding gene: 73541606

Following gene: 73541603

Centisome position: 55.24

GC content: 66.49

Gene sequence:

>1152_bases
TTGAACAAGACACCTGTGGCCGACGATGAAGCCATGCTGGCCGGCCTGACCGTGCTGGACCTGAGTCAGGGCATTGCCGG
TCCGTATTGCGGGCTGATCCTGCGCCAGCAGGGCGCGCGCGTGATCAAGGTGGAACCGCCCGCTGGCGACTGGGGCCGCC
AGATGGGCCGCGTGCGTGAAGGGCAGACTGCGATCGCCATTGCCTACAACGCCGGCAAGGAGAGCGTGGTGCTCGATACG
CGCACCGAATCAGGCAAGGCCGCGCTGCGCAAGCTCGCGGAGCAGGCCGACGTGGTCATTCAAAACTATCGCCCCGGCGT
GGCCGAGCGCATGGGTGTCGGCTATGAAGCGCTGTCGGCGCGCAACCCTGCGCTGGTCTATGTCTCGATCACGGGCTACG
GTCAGGATGGCCCGCTCGCGGGCTTGCCTGCGGTCGATACGACCATCCAGGCCTTCAGCGGCCTGATGCATGTGAACCGC
GACGCCACCGGCCAACCGCGCCGCATCGGCTTCTTCCTGGTGGACCTGAGCACGGGCCTGTACGCGGCACAGCATGCATC
GGCTGCGCTGTTCCGCGCGGCACGCAGCGGCAAGGGGCGGCACGTGCAGATGTCGCTGCTGGAGGCGAGCGCGGCGTTGC
AGTCGTATCTGCTGGTGGACGATGCGATGTTTCCCGACGCAGAGTTTGCCGCCGCGAATGCGCCGACGGGCATGTTCCAG
GCTGCGGATGGCCCGCTCTACGTCAGCATGCTCAATGACGCGATGTTCACGCGTCTGGCCTCCGTTCTCGGGTTTGATGA
CTGGCTGGCCGATCCGGATCTGCGCACGAGCGCGGGCCGCCTGCCGCGTACGGCCGAGCTATGCCAACGGTTGGGCGCCG
CGCTGGCGCAGAAGCCGCTGGCGTACTGGGAGTCGATCTTTACGGAGCATGATGTGCTTTTCGCACGCGTAAGCCGGCCA
CGCGAGTTGCGGGTGAGCGAGCAATGCACGCAGGCTGGCGTATTCGGCAACGTTTCGCAGGCCGGCCTTGGCGAGCTGCC
GTGGGCGAATCTGCCGGGGTTCGCCGGAACCGTCCATCCGCATGGGACGGCACCTTTGCTCGGCGAACACACGGCATCGG
TGCTTGCCGAATTTGGCGTTGCCGACGCCTAG

Upstream 100 bases:

>100_bases
GGCCGTCGACACCACCATGTCGCGCCGCGCGATCGGCAAGGTCATGCTCGACATGCCCTGACGGGGCGGCAGGGCCATCA
AAGAACAACGGGAGACAGAC

Downstream 100 bases:

>100_bases
TGGCACACCGGCTGGCCGAGCGTCCTCAACACTGGGACAGCGTATCGGCCAGCCACTCGATCACCGGCCGGAAGCGCGAT
GCGCCGCGGAACTCTGTCGG

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 383; Mature: 383

Protein sequence:

>383_residues
MNKTPVADDEAMLAGLTVLDLSQGIAGPYCGLILRQQGARVIKVEPPAGDWGRQMGRVREGQTAIAIAYNAGKESVVLDT
RTESGKAALRKLAEQADVVIQNYRPGVAERMGVGYEALSARNPALVYVSITGYGQDGPLAGLPAVDTTIQAFSGLMHVNR
DATGQPRRIGFFLVDLSTGLYAAQHASAALFRAARSGKGRHVQMSLLEASAALQSYLLVDDAMFPDAEFAAANAPTGMFQ
AADGPLYVSMLNDAMFTRLASVLGFDDWLADPDLRTSAGRLPRTAELCQRLGAALAQKPLAYWESIFTEHDVLFARVSRP
RELRVSEQCTQAGVFGNVSQAGLGELPWANLPGFAGTVHPHGTAPLLGEHTASVLAEFGVADA

Sequences:

>Translated_383_residues
MNKTPVADDEAMLAGLTVLDLSQGIAGPYCGLILRQQGARVIKVEPPAGDWGRQMGRVREGQTAIAIAYNAGKESVVLDT
RTESGKAALRKLAEQADVVIQNYRPGVAERMGVGYEALSARNPALVYVSITGYGQDGPLAGLPAVDTTIQAFSGLMHVNR
DATGQPRRIGFFLVDLSTGLYAAQHASAALFRAARSGKGRHVQMSLLEASAALQSYLLVDDAMFPDAEFAAANAPTGMFQ
AADGPLYVSMLNDAMFTRLASVLGFDDWLADPDLRTSAGRLPRTAELCQRLGAALAQKPLAYWESIFTEHDVLFARVSRP
RELRVSEQCTQAGVFGNVSQAGLGELPWANLPGFAGTVHPHGTAPLLGEHTASVLAEFGVADA
>Mature_383_residues
MNKTPVADDEAMLAGLTVLDLSQGIAGPYCGLILRQQGARVIKVEPPAGDWGRQMGRVREGQTAIAIAYNAGKESVVLDT
RTESGKAALRKLAEQADVVIQNYRPGVAERMGVGYEALSARNPALVYVSITGYGQDGPLAGLPAVDTTIQAFSGLMHVNR
DATGQPRRIGFFLVDLSTGLYAAQHASAALFRAARSGKGRHVQMSLLEASAALQSYLLVDDAMFPDAEFAAANAPTGMFQ
AADGPLYVSMLNDAMFTRLASVLGFDDWLADPDLRTSAGRLPRTAELCQRLGAALAQKPLAYWESIFTEHDVLFARVSRP
RELRVSEQCTQAGVFGNVSQAGLGELPWANLPGFAGTVHPHGTAPLLGEHTASVLAEFGVADA

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=377, Percent_Identity=29.1777188328912, Blast_Score=164, Evalue=2e-40,
Organism=Homo sapiens, GI300863124, Length=402, Percent_Identity=28.6069651741293, Blast_Score=156, Evalue=4e-38,
Organism=Homo sapiens, GI42794625, Length=395, Percent_Identity=26.3291139240506, Blast_Score=125, Evalue=8e-29,
Organism=Homo sapiens, GI266456254, Length=395, Percent_Identity=26.3291139240506, Blast_Score=125, Evalue=9e-29,
Organism=Homo sapiens, GI300863126, Length=372, Percent_Identity=25.5376344086022, Blast_Score=117, Evalue=2e-26,
Organism=Homo sapiens, GI13376042, Length=402, Percent_Identity=25.1243781094527, Blast_Score=109, Evalue=3e-24,
Organism=Homo sapiens, GI266458397, Length=207, Percent_Identity=32.8502415458937, Blast_Score=108, Evalue=8e-24,
Organism=Homo sapiens, GI266458393, Length=207, Percent_Identity=32.8502415458937, Blast_Score=108, Evalue=9e-24,
Organism=Homo sapiens, GI266458395, Length=143, Percent_Identity=34.965034965035, Blast_Score=92, Evalue=1e-18,
Organism=Homo sapiens, GI42822893, Length=143, Percent_Identity=34.965034965035, Blast_Score=92, Evalue=1e-18,
Organism=Escherichia coli, GI87082093, Length=297, Percent_Identity=33.6700336700337, Blast_Score=171, Evalue=1e-43,
Organism=Escherichia coli, GI1788717, Length=404, Percent_Identity=27.2277227722772, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1786222, Length=335, Percent_Identity=27.1641791044776, Blast_Score=87, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI115535051, Length=317, Percent_Identity=26.1829652996845, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI32564160, Length=209, Percent_Identity=27.7511961722488, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24648431, Length=386, Percent_Identity=31.8652849740933, Blast_Score=170, Evalue=2e-42,
Organism=Drosophila melanogaster, GI24585488, Length=211, Percent_Identity=31.7535545023697, Blast_Score=99, Evalue=7e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 40668; Mature: 40668

Theoretical pI: Translated: 5.65; Mature: 5.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKTPVADDEAMLAGLTVLDLSQGIAGPYCGLILRQQGARVIKVEPPAGDWGRQMGRVRE
CCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCC
GQTAIAIAYNAGKESVVLDTRTESGKAALRKLAEQADVVIQNYRPGVAERMGVGYEALSA
CCEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCHHHHCC
RNPALVYVSITGYGQDGPLAGLPAVDTTIQAFSGLMHVNRDATGQPRRIGFFLVDLSTGL
CCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCH
YAAQHASAALFRAARSGKGRHVQMSLLEASAALQSYLLVDDAMFPDAEFAAANAPTGMFQ
HHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCEE
AADGPLYVSMLNDAMFTRLASVLGFDDWLADPDLRTSAGRLPRTAELCQRLGAALAQKPL
CCCCCEEEHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
AYWESIFTEHDVLFARVSRPRELRVSEQCTQAGVFGNVSQAGLGELPWANLPGFAGTVHP
HHHHHHHHHHHHHHEECCCCHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
HGTAPLLGEHTASVLAEFGVADA
CCCCCCHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNKTPVADDEAMLAGLTVLDLSQGIAGPYCGLILRQQGARVIKVEPPAGDWGRQMGRVRE
CCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCC
GQTAIAIAYNAGKESVVLDTRTESGKAALRKLAEQADVVIQNYRPGVAERMGVGYEALSA
CCEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCHHHHCC
RNPALVYVSITGYGQDGPLAGLPAVDTTIQAFSGLMHVNRDATGQPRRIGFFLVDLSTGL
CCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCH
YAAQHASAALFRAARSGKGRHVQMSLLEASAALQSYLLVDDAMFPDAEFAAANAPTGMFQ
HHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCEE
AADGPLYVSMLNDAMFTRLASVLGFDDWLADPDLRTSAGRLPRTAELCQRLGAALAQKPL
CCCCCEEEHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
AYWESIFTEHDVLFARVSRPRELRVSEQCTQAGVFGNVSQAGLGELPWANLPGFAGTVHP
HHHHHHHHHHHHHHEECCCCHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
HGTAPLLGEHTASVLAEFGVADA
CCCCCCHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]