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The map label for this gene is ygcF [C]

Identifier: 73541537

GI number: 73541537

Start: 2023315

End: 2023950

Strand: Reverse

Name: ygcF [C]

Synonym: Reut_A1848

Alternate gene names: 73541537

Gene position: 2023950-2023315 (Counterclockwise)

Preceding gene: 73541539

Following gene: 73541536

Centisome position: 53.17

GC content: 66.04

Gene sequence:

>636_bases
ATGACTTACGCCGTCAAGGAAATCTTCTATACGCTGCAGGGCGAAGGCGCCAACGCTGGCCGTGCCGCGGTGTTCTGCCG
TTTTGCCGGCTGCAACCTGTGGAGCGGGCGCGAAGAGGACCGGGCGACGGCGGTATGCCAGTTCTGCGACACGGACTTCG
TGGGCACCGATGGCACGCGCGGCGGCAAGTACCGTACCGCGGAGGAACTGGCTGGGGCAGTCGCCTCCGAATGGCCGCAG
GGCGCCGGCGGCAAGCCGCTGGTGGTATGCACGGGTGGCGAGCCGCTGCTGCAACTCGATGCGCCGCTGATCGACGCGCT
GCACGCGCAGGGCTTCGAGATCGCGATCGAAACCAACGGCACCATCAAGGTGCCGCCGGGCATCGACTGGGTCTGCGTGA
GCCCGAAGATGGGTTCCGAATTGGTGGTAAGGAAGGGCGACGAGCTGAAGGTGGTGATCCCCCAGGTCGGCCAGGACTTT
GCCGCATATGAGCAGCTGGATTTCCAGTATTTCCTGGTGCAGGCCATGGACGGCCCGCTGGCCCGCGAAAATACCGCCGC
CGCCGTGGCGTTTTGCCAGCGGCATCCGCGCTGGCGGCTGTCGCTGCAGACCCACAAGCTGCTCGGCATCCGCTGA

Upstream 100 bases:

>100_bases
ATCTCTGATCCGGAGTCCTGGCCTCGCTCTCCCGACCCATGAAAGACTGGCCGCCATCGGCCGCTGAAACCATTGCGTTC
CTGACCGGAGCGCGCAAAGC

Downstream 100 bases:

>100_bases
TTGCTGTCGCGCAGGTCGCACCTCGGCGACAATAGCGCCGCGGACCCCGGCACGAAGCCCATTCAACGCAGGCCGCCTAG
CATGCGCCCGTACTCATGAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 210

Protein sequence:

>211_residues
MTYAVKEIFYTLQGEGANAGRAAVFCRFAGCNLWSGREEDRATAVCQFCDTDFVGTDGTRGGKYRTAEELAGAVASEWPQ
GAGGKPLVVCTGGEPLLQLDAPLIDALHAQGFEIAIETNGTIKVPPGIDWVCVSPKMGSELVVRKGDELKVVIPQVGQDF
AAYEQLDFQYFLVQAMDGPLARENTAAAVAFCQRHPRWRLSLQTHKLLGIR

Sequences:

>Translated_211_residues
MTYAVKEIFYTLQGEGANAGRAAVFCRFAGCNLWSGREEDRATAVCQFCDTDFVGTDGTRGGKYRTAEELAGAVASEWPQ
GAGGKPLVVCTGGEPLLQLDAPLIDALHAQGFEIAIETNGTIKVPPGIDWVCVSPKMGSELVVRKGDELKVVIPQVGQDF
AAYEQLDFQYFLVQAMDGPLARENTAAAVAFCQRHPRWRLSLQTHKLLGIR
>Mature_210_residues
TYAVKEIFYTLQGEGANAGRAAVFCRFAGCNLWSGREEDRATAVCQFCDTDFVGTDGTRGGKYRTAEELAGAVASEWPQG
AGGKPLVVCTGGEPLLQLDAPLIDALHAQGFEIAIETNGTIKVPPGIDWVCVSPKMGSELVVRKGDELKVVIPQVGQDFA
AYEQLDFQYFLVQAMDGPLARENTAAAVAFCQRHPRWRLSLQTHKLLGIR

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

Organism=Escherichia coli, GI1789139, Length=238, Percent_Identity=30.2521008403361, Blast_Score=78, Evalue=5e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 22881; Mature: 22750

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTYAVKEIFYTLQGEGANAGRAAVFCRFAGCNLWSGREEDRATAVCQFCDTDFVGTDGTR
CCEEEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC
GGKYRTAEELAGAVASEWPQGAGGKPLVVCTGGEPLLQLDAPLIDALHAQGFEIAIETNG
CCCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCEEEECCHHHHHHHCCCEEEEEECCC
TIKVPPGIDWVCVSPKMGSELVVRKGDELKVVIPQVGQDFAAYEQLDFQYFLVQAMDGPL
EEECCCCCCEEEECCCCCCEEEEECCCCEEEECCCCCCCHHHHHHCCCEEEEEECCCCCC
ARENTAAAVAFCQRHPRWRLSLQTHKLLGIR
CCCCHHHHHHHHHCCCCEEEEEEEEEEECCC
>Mature Secondary Structure 
TYAVKEIFYTLQGEGANAGRAAVFCRFAGCNLWSGREEDRATAVCQFCDTDFVGTDGTR
CEEEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC
GGKYRTAEELAGAVASEWPQGAGGKPLVVCTGGEPLLQLDAPLIDALHAQGFEIAIETNG
CCCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCEEEECCHHHHHHHCCCEEEEEECCC
TIKVPPGIDWVCVSPKMGSELVVRKGDELKVVIPQVGQDFAAYEQLDFQYFLVQAMDGPL
EEECCCCCCEEEECCCCCCEEEEECCCCEEEECCCCCCCHHHHHHCCCEEEEEECCCCCC
ARENTAAAVAFCQRHPRWRLSLQTHKLLGIR
CCCCHHHHHHHHHCCCCEEEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]