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The map label for this gene is ybhD [H]

Identifier: 73541525

GI number: 73541525

Start: 2010925

End: 2011866

Strand: Reverse

Name: ybhD [H]

Synonym: Reut_A1836

Alternate gene names: 73541525

Gene position: 2011866-2010925 (Counterclockwise)

Preceding gene: 73541526

Following gene: 73541524

Centisome position: 52.85

GC content: 67.2

Gene sequence:

>942_bases
ATGGGCACATTCAATCGCCTGCACCTGATCCGGCAGATCGACCTGTTCACGCTGCGCCTCTTTCTGTCCGCCGTTGAGGA
GCAGCAGATCCAGCGTGCTGCGCTGCGGGAAAACATTGCCGCCTCGACGGCGACCAAACGCATCCAGGACCTTGAGGACA
TCGCGGGCGTCAAGCTGCTCGAACGCGGCCCGAAAGGCGTGGTGCCCAGTCCAGCCGGCGCGGTGCTGGTGCACTACGCA
CGCCGCATCTTCGAGAACGTGGAGGACATGCGCTCCGAGATATCGGCCTTCACCGAAGGGATGCGCGGCAAGGTCGTGGT
CGCGTCGGCGCGCTCGATCATTGCGCCGTTCCTGGCCCGCGAACTGGGCGACTATGCGCGGGATTTTCCGCTGGTGGAGC
TGGCCGTGCGCGAGGTGGAGAACGCCCAGATCCTGGAGGCGGTGTCCCGCAGCGATGCCGACATAGGCGTGTTCGCCATG
GCTCACGAACTGGAACTCGGCGGCGTGGATGTCACGCCGTATCGACGCGACCGGCTGGTGGCCGTGGTGCCGCGGTCCCA
CGCGCTGGGCGCGCGCGAGATCGTCACGTTCGCCGACCTGCTGCCCGAGCGCGTGATTCCGGTCGACGCGATGCTCGGCG
CTTTTCGCGTCGCGGCAAAGCGGCTTGGGAAGGAGTTCCAGCCGCTGTTCAGCGTGCGCAGCGCCGGCACGGCGATCAGT
CTCGTGCAAGCGGGGCTGGGCGTGACGGTGCAGCCGGAGTGCCTGGTCAGCCATGAACTGTTCGATGACGTGAGCTGCAT
TCCGCTGGATGAACCGTGGGCCGTGCGCAGCGTCCATATCGCCACGCCGCGCGGCCGTTTGCTGAGTCCGGCCGCCGCCG
CGCTGATGAAGCAACTGCTCGAACGTCCCGGCGAACAGGCGCCCGCGCCAGCGCAGGACTGA

Upstream 100 bases:

>100_bases
CAGGCAGCGCAGCGCTCCGGGCTGATGAACGCCGTGCCGCGGCGAGGCGTAATATCCTGCTCATCACACCTGTCCCGACC
TCCGACACTTGGGCACATCC

Downstream 100 bases:

>100_bases
GCTGACACTGATACCCCGGATTTCCGGACCGCCAGCAAGGCGGGCATTCGTGCCCGCCTTTTTCATTTCGCCCGCACCGA
AACGCCGCTTCAAAAATGGC

Product: regulatory protein, LysR:LysR, substrate-binding

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 312

Protein sequence:

>313_residues
MGTFNRLHLIRQIDLFTLRLFLSAVEEQQIQRAALRENIAASTATKRIQDLEDIAGVKLLERGPKGVVPSPAGAVLVHYA
RRIFENVEDMRSEISAFTEGMRGKVVVASARSIIAPFLARELGDYARDFPLVELAVREVENAQILEAVSRSDADIGVFAM
AHELELGGVDVTPYRRDRLVAVVPRSHALGAREIVTFADLLPERVIPVDAMLGAFRVAAKRLGKEFQPLFSVRSAGTAIS
LVQAGLGVTVQPECLVSHELFDDVSCIPLDEPWAVRSVHIATPRGRLLSPAAAALMKQLLERPGEQAPAPAQD

Sequences:

>Translated_313_residues
MGTFNRLHLIRQIDLFTLRLFLSAVEEQQIQRAALRENIAASTATKRIQDLEDIAGVKLLERGPKGVVPSPAGAVLVHYA
RRIFENVEDMRSEISAFTEGMRGKVVVASARSIIAPFLARELGDYARDFPLVELAVREVENAQILEAVSRSDADIGVFAM
AHELELGGVDVTPYRRDRLVAVVPRSHALGAREIVTFADLLPERVIPVDAMLGAFRVAAKRLGKEFQPLFSVRSAGTAIS
LVQAGLGVTVQPECLVSHELFDDVSCIPLDEPWAVRSVHIATPRGRLLSPAAAALMKQLLERPGEQAPAPAQD
>Mature_312_residues
GTFNRLHLIRQIDLFTLRLFLSAVEEQQIQRAALRENIAASTATKRIQDLEDIAGVKLLERGPKGVVPSPAGAVLVHYAR
RIFENVEDMRSEISAFTEGMRGKVVVASARSIIAPFLARELGDYARDFPLVELAVREVENAQILEAVSRSDADIGVFAMA
HELELGGVDVTPYRRDRLVAVVPRSHALGAREIVTFADLLPERVIPVDAMLGAFRVAAKRLGKEFQPLFSVRSAGTAISL
VQAGLGVTVQPECLVSHELFDDVSCIPLDEPWAVRSVHIATPRGRLLSPAAAALMKQLLERPGEQAPAPAQD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=282, Percent_Identity=25.177304964539, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1787879, Length=302, Percent_Identity=28.8079470198675, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI2367136, Length=246, Percent_Identity=25.609756097561, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1790399, Length=275, Percent_Identity=25.4545454545455, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI157672245, Length=289, Percent_Identity=21.7993079584775, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788748, Length=241, Percent_Identity=21.1618257261411, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1789506, Length=287, Percent_Identity=22.9965156794425, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34150; Mature: 34019

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGTFNRLHLIRQIDLFTLRLFLSAVEEQQIQRAALRENIAASTATKRIQDLEDIAGVKLL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ERGPKGVVPSPAGAVLVHYARRIFENVEDMRSEISAFTEGMRGKVVVASARSIIAPFLAR
HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHH
ELGDYARDFPLVELAVREVENAQILEAVSRSDADIGVFAMAHELELGGVDVTPYRRDRLV
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEE
AVVPRSHALGAREIVTFADLLPERVIPVDAMLGAFRVAAKRLGKEFQPLFSVRSAGTAIS
EEECCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
LVQAGLGVTVQPECLVSHELFDDVSCIPLDEPWAVRSVHIATPRGRLLSPAAAALMKQLL
HHHHCCCCEECHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHH
ERPGEQAPAPAQD
HCCCCCCCCCCCC
>Mature Secondary Structure 
GTFNRLHLIRQIDLFTLRLFLSAVEEQQIQRAALRENIAASTATKRIQDLEDIAGVKLL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ERGPKGVVPSPAGAVLVHYARRIFENVEDMRSEISAFTEGMRGKVVVASARSIIAPFLAR
HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHH
ELGDYARDFPLVELAVREVENAQILEAVSRSDADIGVFAMAHELELGGVDVTPYRRDRLV
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEE
AVVPRSHALGAREIVTFADLLPERVIPVDAMLGAFRVAAKRLGKEFQPLFSVRSAGTAIS
EEECCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
LVQAGLGVTVQPECLVSHELFDDVSCIPLDEPWAVRSVHIATPRGRLLSPAAAALMKQLL
HHHHCCCCEECHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHH
ERPGEQAPAPAQD
HCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]