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The map label for this gene is ybhD [C]

Identifier: 73541334

GI number: 73541334

Start: 1769734

End: 1770642

Strand: Reverse

Name: ybhD [C]

Synonym: Reut_A1644

Alternate gene names: 73541334

Gene position: 1770642-1769734 (Counterclockwise)

Preceding gene: 73541335

Following gene: 73541333

Centisome position: 46.52

GC content: 62.71

Gene sequence:

>909_bases
ATGAGCCAGCTTGACCCGCTTTCGCTTGAGCTCTTCATCCACGTCGTGGAGCATGGGACGATCGCCGCCGCCGCAGAGCG
CGAACACATTTCCGCAGCGGCTGTCAGCAAGCGCTTGAGCGACCTTGAAGCCCAGCTTCAGACGCAGCTGCTGGTGCGCA
CCAACAAGGGCGTGGAACCGACTCCAGCCGGCCAGGCGTTGTTGACGCTCGCCCGCAGTGCCCTGCATGAGCTGGACCAG
GTCTTGGTGCAGATGCAGAGCTTTGCCGTGGGTGTACGCGGACTGGTGCGCATCTGCTCGAGCCTCTCAGCCATTCTCCA
GTTCCTCGCCGAACCGCTTCACTCGTTCTCGGCACGATACCCAACGGTCCAGCTGCAGCTGGAGGAAAAGACCAGCACAC
TGGTGCCAAAGGCTGTTGCCGAGAACGCCGCCGACATCGGCATCTACCTGCCGGTCATGCCCGTGCCTGGGTTGCAGACG
TTCCCGTTCCGCAAGGACAGGCTCGTCGTGGTCACACCGCATGGGCATGTGCTCGGGAATCGGCCCCACGTTGCCCTTCG
AGACCTGCTCGATCACGAACTCGTCAGCATGCACACAGGAAGTGCCATCGACGTCGCGCTGCTGCGTGCCGCGCAAGACT
TGCATTGCCCGTTGAAACTGCGTATCCGGGTAACGAGTTTCGACGCTTTGTGCGTGATGGTTAGCGCCGGACTCGGCATC
GGCATACTGCCGGAGGCGATCGCACAGCGTAACTGCGCCACGATGCCGCTATGCATCGTGCCGCTCAGCGATGCGCTGGC
GAGGCGCGAGTTCCTGCTGGCCGTGCGCTCCATGGATGCCTTACCCGTGGCGTCGCAGATGCTGGTGCGACATTTGCTGG
AAACGGAGGATGGCACGGACGGTGTCTGA

Upstream 100 bases:

>100_bases
TGGACAAGGTGGACGCCTGCGCAAAGCATTGCTTTGCGATGCCGCCATAACGAAAACTGAGGGCAGTACGGCTCCTCTAC
GTGGAGCAAACGACATCCCC

Downstream 100 bases:

>100_bases
GCTCGCCTGCCGCCTCACATAGAGGGGGTGAGCGGATTAGGCGACACGAGCGGCCATCGGCCGGACCGTCCGCTCACATT
CCAGGGAACTATCATGAACT

Product: regulatory protein, LysR:LysR, substrate-binding

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 301

Protein sequence:

>302_residues
MSQLDPLSLELFIHVVEHGTIAAAAEREHISAAAVSKRLSDLEAQLQTQLLVRTNKGVEPTPAGQALLTLARSALHELDQ
VLVQMQSFAVGVRGLVRICSSLSAILQFLAEPLHSFSARYPTVQLQLEEKTSTLVPKAVAENAADIGIYLPVMPVPGLQT
FPFRKDRLVVVTPHGHVLGNRPHVALRDLLDHELVSMHTGSAIDVALLRAAQDLHCPLKLRIRVTSFDALCVMVSAGLGI
GILPEAIAQRNCATMPLCIVPLSDALARREFLLAVRSMDALPVASQMLVRHLLETEDGTDGV

Sequences:

>Translated_302_residues
MSQLDPLSLELFIHVVEHGTIAAAAEREHISAAAVSKRLSDLEAQLQTQLLVRTNKGVEPTPAGQALLTLARSALHELDQ
VLVQMQSFAVGVRGLVRICSSLSAILQFLAEPLHSFSARYPTVQLQLEEKTSTLVPKAVAENAADIGIYLPVMPVPGLQT
FPFRKDRLVVVTPHGHVLGNRPHVALRDLLDHELVSMHTGSAIDVALLRAAQDLHCPLKLRIRVTSFDALCVMVSAGLGI
GILPEAIAQRNCATMPLCIVPLSDALARREFLLAVRSMDALPVASQMLVRHLLETEDGTDGV
>Mature_301_residues
SQLDPLSLELFIHVVEHGTIAAAAEREHISAAAVSKRLSDLEAQLQTQLLVRTNKGVEPTPAGQALLTLARSALHELDQV
LVQMQSFAVGVRGLVRICSSLSAILQFLAEPLHSFSARYPTVQLQLEEKTSTLVPKAVAENAADIGIYLPVMPVPGLQTF
PFRKDRLVVVTPHGHVLGNRPHVALRDLLDHELVSMHTGSAIDVALLRAAQDLHCPLKLRIRVTSFDALCVMVSAGLGIG
ILPEAIAQRNCATMPLCIVPLSDALARREFLLAVRSMDALPVASQMLVRHLLETEDGTDGV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=283, Percent_Identity=24.0282685512367, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI1788297, Length=255, Percent_Identity=25.8823529411765, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI1787879, Length=289, Percent_Identity=26.9896193771626, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI157672245, Length=258, Percent_Identity=26.7441860465116, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1787530, Length=245, Percent_Identity=27.7551020408163, Blast_Score=78, Evalue=9e-16,
Organism=Escherichia coli, GI2367136, Length=246, Percent_Identity=26.0162601626016, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788748, Length=284, Percent_Identity=26.4084507042254, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1786401, Length=247, Percent_Identity=25.1012145748988, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1790262, Length=234, Percent_Identity=25.2136752136752, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1787806, Length=178, Percent_Identity=29.2134831460674, Blast_Score=61, Evalue=8e-11,
Organism=Escherichia coli, GI1789204, Length=243, Percent_Identity=23.0452674897119, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32655; Mature: 32523

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQLDPLSLELFIHVVEHGTIAAAAEREHISAAAVSKRLSDLEAQLQTQLLVRTNKGVEP
CCCCCCHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
TPAGQALLTLARSALHELDQVLVQMQSFAVGVRGLVRICSSLSAILQFLAEPLHSFSARY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PTVQLQLEEKTSTLVPKAVAENAADIGIYLPVMPVPGLQTFPFRKDRLVVVTPHGHVLGN
CEEEEEECCCHHHHCCHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCEECC
RPHVALRDLLDHELVSMHTGSAIDVALLRAAQDLHCPLKLRIRVTSFDALCVMVSAGLGI
CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEEEECHHHHHHHHHCCCCC
GILPEAIAQRNCATMPLCIVPLSDALARREFLLAVRSMDALPVASQMLVRHLLETEDGTD
CCCHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC
GV
CC
>Mature Secondary Structure 
SQLDPLSLELFIHVVEHGTIAAAAEREHISAAAVSKRLSDLEAQLQTQLLVRTNKGVEP
CCCCCHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
TPAGQALLTLARSALHELDQVLVQMQSFAVGVRGLVRICSSLSAILQFLAEPLHSFSARY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PTVQLQLEEKTSTLVPKAVAENAADIGIYLPVMPVPGLQTFPFRKDRLVVVTPHGHVLGN
CEEEEEECCCHHHHCCHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCEECC
RPHVALRDLLDHELVSMHTGSAIDVALLRAAQDLHCPLKLRIRVTSFDALCVMVSAGLGI
CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEEEECHHHHHHHHHCCCCC
GILPEAIAQRNCATMPLCIVPLSDALARREFLLAVRSMDALPVASQMLVRHLLETEDGTD
CCCHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC
GV
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]