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The map label for this gene is xerD [H]

Identifier: 73541315

GI number: 73541315

Start: 1747615

End: 1748850

Strand: Reverse

Name: xerD [H]

Synonym: Reut_A1625

Alternate gene names: 73541315

Gene position: 1748850-1747615 (Counterclockwise)

Preceding gene: 73541321

Following gene: 73541314

Centisome position: 45.94

GC content: 69.09

Gene sequence:

>1236_bases
ATGCAACCCGCCTTGGATGTCCACTCCCCGGTCGCCCGCGCCCTCGCCGCCATCGTGCCTGTACCGATCGAGCGCTTGCA
CCTGCCCATCGAGCTTTCTGGTGCTCAGGGCACGAATCGGGCGCCGGCGCGCGGGTCGCAGATTGCAGCGTCGGATGATT
TGGCCGCTGTTGCCGCCTGGCTCGCGCGCTATGCCAACAGTCCGGCCACGTTTCAGGCCTATCGGCGCGAAGTCGAGCGG
CTCGTGTTGTGGGCCACGCTGCAACGCGGGAAGCCTCTGTCGTCACTGACGCATGAAGATTTGCTGGCCTACGAGCACTT
CCTCGGCGACCCCCAACCCGCCGCGCGGTGGGTGCTCGGCGCCGGCAAGAAGCTCGCGCGCAACCACCCCGGCTGGCGCC
CGTTTGCCGGCCCGCTGTCGCCGGCGAGCACGCGCCAGGCCATGGTCATCCTCAATGCCTGTTTTGCGTGGCTCACGGAA
GCCGGCTACCTGTCAGGCAATCCGCTTTCGCTGGCGCGGCGCCGGCGCGGGCCGACGCAGGCCAGGATCACGCGCTACCT
GAGCCACGCATTGTGGGATGCGGTCAAGGAAGCCATCGAAGCGATGCCGACCGGTACCGAGCGGGAGTGCCTGCACGCGG
CGCGCTGCCGCTGGCTTTGCACGGTGCTGTACCTGGCGGGTCTGCGCGCCTCGGAAGTCGCCGGCACCACCATGGGGGCC
TTCTTCTGCCGGCGCGACGCCCAGGGGATTGAGCGCTGGTGGCTGGAGGTCGTCGGCAAGGGCAGCAAGCCGCGGCTGGT
CCCGGCGACCGACGAACTCGTTGCCGAACTCGCCCGCTACCGGCGCGCGAATGGCTTGCCGCCCATGCCGCAGCCCGGGG
AAGATCGGCCGCTGGTGTTGCCGGTGATCGGCCGCGCGAACCCCGATAAGGCGATGTCGCGCGGCGCCCTGCATCTGGTC
CTCAAGGAAGTGTTCAGCATGGCGGCAGAGCGCTTGCGCGCGCGCGGGCCGCAATGGGCGGCGCAGGCCGATGTGCTGGC
CAGCGCGTCGGCACACTGGCTGCGGCATACGGCGGGCTCGCACATGAGCGACCGGCAGGTGGACCTGCGCCATGTCCGCG
ACAACTTTGGCCACGCGTCGATCTCCACCACCAGCATCTACCTGCATACCGAAGACGATGCGCGGCATGAGGCGACGCAG
GAGCGGCATCGGATTGGCTGGACCAGCAAGGCATGA

Upstream 100 bases:

>100_bases
GTAATACGTTATTTATTTTGATTGATGTGCATTTTCTTAGACATAAGTGTTCTTATGTCTATAATAACGTCGAGATCACA
TTTCTCCCCTTGCCCTCGCT

Downstream 100 bases:

>100_bases
GCAGTGTCCGCCCCTACCTGGACGCCTCGGCGCTGCCTTGCGCGCCTTGTGACGATGCAACATTTAATGCAAAATCCCCT
GAAATCTGAACGCAGCGGCA

Product: Phage integrase:Phage integrase, N-terminal SAM-like

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 411; Mature: 411

Protein sequence:

>411_residues
MQPALDVHSPVARALAAIVPVPIERLHLPIELSGAQGTNRAPARGSQIAASDDLAAVAAWLARYANSPATFQAYRREVER
LVLWATLQRGKPLSSLTHEDLLAYEHFLGDPQPAARWVLGAGKKLARNHPGWRPFAGPLSPASTRQAMVILNACFAWLTE
AGYLSGNPLSLARRRRGPTQARITRYLSHALWDAVKEAIEAMPTGTERECLHAARCRWLCTVLYLAGLRASEVAGTTMGA
FFCRRDAQGIERWWLEVVGKGSKPRLVPATDELVAELARYRRANGLPPMPQPGEDRPLVLPVIGRANPDKAMSRGALHLV
LKEVFSMAAERLRARGPQWAAQADVLASASAHWLRHTAGSHMSDRQVDLRHVRDNFGHASISTTSIYLHTEDDARHEATQ
ERHRIGWTSKA

Sequences:

>Translated_411_residues
MQPALDVHSPVARALAAIVPVPIERLHLPIELSGAQGTNRAPARGSQIAASDDLAAVAAWLARYANSPATFQAYRREVER
LVLWATLQRGKPLSSLTHEDLLAYEHFLGDPQPAARWVLGAGKKLARNHPGWRPFAGPLSPASTRQAMVILNACFAWLTE
AGYLSGNPLSLARRRRGPTQARITRYLSHALWDAVKEAIEAMPTGTERECLHAARCRWLCTVLYLAGLRASEVAGTTMGA
FFCRRDAQGIERWWLEVVGKGSKPRLVPATDELVAELARYRRANGLPPMPQPGEDRPLVLPVIGRANPDKAMSRGALHLV
LKEVFSMAAERLRARGPQWAAQADVLASASAHWLRHTAGSHMSDRQVDLRHVRDNFGHASISTTSIYLHTEDDARHEATQ
ERHRIGWTSKA
>Mature_411_residues
MQPALDVHSPVARALAAIVPVPIERLHLPIELSGAQGTNRAPARGSQIAASDDLAAVAAWLARYANSPATFQAYRREVER
LVLWATLQRGKPLSSLTHEDLLAYEHFLGDPQPAARWVLGAGKKLARNHPGWRPFAGPLSPASTRQAMVILNACFAWLTE
AGYLSGNPLSLARRRRGPTQARITRYLSHALWDAVKEAIEAMPTGTERECLHAARCRWLCTVLYLAGLRASEVAGTTMGA
FFCRRDAQGIERWWLEVVGKGSKPRLVPATDELVAELARYRRANGLPPMPQPGEDRPLVLPVIGRANPDKAMSRGALHLV
LKEVFSMAAERLRARGPQWAAQADVLASASAHWLRHTAGSHMSDRQVDLRHVRDNFGHASISTTSIYLHTEDDARHEATQ
ERHRIGWTSKA

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=261, Percent_Identity=26.8199233716475, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 45307; Mature: 45307

Theoretical pI: Translated: 10.38; Mature: 10.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPALDVHSPVARALAAIVPVPIERLHLPIELSGAQGTNRAPARGSQIAASDDLAAVAAW
CCCCCCHHHHHHHHHHHHHCCCHHHEECCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHH
LARYANSPATFQAYRREVERLVLWATLQRGKPLSSLTHEDLLAYEHFLGDPQPAARWVLG
HHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHH
AGKKLARNHPGWRPFAGPLSPASTRQAMVILNACFAWLTEAGYLSGNPLSLARRRRGPTQ
CCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCHH
ARITRYLSHALWDAVKEAIEAMPTGTERECLHAARCRWLCTVLYLAGLRASEVAGTTMGA
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
FFCRRDAQGIERWWLEVVGKGSKPRLVPATDELVAELARYRRANGLPPMPQPGEDRPLVL
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEE
PVIGRANPDKAMSRGALHLVLKEVFSMAAERLRARGPQWAAQADVLASASAHWLRHTAGS
EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCC
HMSDRQVDLRHVRDNFGHASISTTSIYLHTEDDARHEATQERHRIGWTSKA
CCCCHHHHHHHHHHCCCCCEEEEEEEEEECCCHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MQPALDVHSPVARALAAIVPVPIERLHLPIELSGAQGTNRAPARGSQIAASDDLAAVAAW
CCCCCCHHHHHHHHHHHHHCCCHHHEECCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHH
LARYANSPATFQAYRREVERLVLWATLQRGKPLSSLTHEDLLAYEHFLGDPQPAARWVLG
HHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHH
AGKKLARNHPGWRPFAGPLSPASTRQAMVILNACFAWLTEAGYLSGNPLSLARRRRGPTQ
CCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCHH
ARITRYLSHALWDAVKEAIEAMPTGTERECLHAARCRWLCTVLYLAGLRASEVAGTTMGA
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
FFCRRDAQGIERWWLEVVGKGSKPRLVPATDELVAELARYRRANGLPPMPQPGEDRPLVL
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEE
PVIGRANPDKAMSRGALHLVLKEVFSMAAERLRARGPQWAAQADVLASASAHWLRHTAGS
EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCC
HMSDRQVDLRHVRDNFGHASISTTSIYLHTEDDARHEATQERHRIGWTSKA
CCCCHHHHHHHHHHCCCCCEEEEEEEEEECCCHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10910347; 12050668 [H]