BacMap

Definition	Ralstonia eutropha JMP134 chromosome 1, complete sequence.
Accession	NC_007347
Length	3,806,533

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The map label for this gene is ygfF [C]

Identifier: 73541312

GI number: 73541312

Start: 1743864

End: 1744601

Strand: Reverse

Name: ygfF [C]

Synonym: Reut_A1622

Alternate gene names: 73541312

Gene position: 1744601-1743864 (Counterclockwise)

Preceding gene: 73541314

Following gene: 73541311

Centisome position: 45.83

GC content: 64.5

Gene sequence:

>738_bases
ATGACGACCAGTTCCAAAGTTGCCCTGATCACCGGCGCCTCCCGCGGCATTGGTGCCACCATTGCGCGCCGGCTGGCCAG
TGACGGTTTCGCCGTCGCCATCAACTACGCATCCAATGCGGCCGAAGCCGACGCCCTGGTGGCCGAGCTGGCCCAGGCTG
GCGTCTCTGCCATCGCGGTCAAGGCCGACGTTTCCAGGGCTGATCACGTGCATGCCATGTTCGCCACCGTCGAAGACCAA
CTCGGCAAGATCGACGTGCTGGTCAACAACGCCGGCGTCCTCAAGACCGCTCCGCTGGCGCAGACCAGCGACGAGCTGTA
CGCGCAGAATTTCGCGATCAATACCCAGGGTGTGTTCAATACCCTGCGCGAAGCTGCCACGCGCCTGAACGATGGCGGGC
GCATCATCAACCTGTCGACTACCACTTTGGCGCTGAACCTGCCCGGCTACGCTATCTACAACGGCACCAAGGCCGCAGTG
GAAGCCTTCACCCGTGTTTTCGCGAAGGAACTGCGCGGCCGCCGCATCACGGTCAACGCGGTGGCGCCCGGTCCGGTGGC
CACGGACTTGTTCCTCAATGGCAAGACTGACGAGCAGATCGACACCTTCGCCAGGATGCCGCCGCTGGAACGGCTGGGCC
AGCCCGAGGACATCGCCGGTGTCGTGGCATTCCTGGCCGGCAAGGACGGCGCCTGGGTCAATGGACAGGTGCTGCGCGCC
AATGGTGGCGTTGCCTGA

Upstream 100 bases:

>100_bases
GTTAAAGCAAATGGAATTGTGATCGCAATTTACACGTAATTATCTTTGACGGTGAACAGTCCAGAATCCTTCTCACCCCC
CTGACCCAAGGATTCAGACC

Downstream 100 bases:

>100_bases
TCCCGACAGGTCCGGCGGCTGGCGGCCCGGTCATGCAGTTCCTGGCGATCGGCCGATAGCTTCGTGGGCTCGGCCATCGC
GGAGCGTCGAATCCATGTAC

Product: Short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: ORFC [H]

Number of amino acids: Translated: 245; Mature: 244

Protein sequence:

>245_residues
MTTSSKVALITGASRGIGATIARRLASDGFAVAINYASNAAEADALVAELAQAGVSAIAVKADVSRADHVHAMFATVEDQ
LGKIDVLVNNAGVLKTAPLAQTSDELYAQNFAINTQGVFNTLREAATRLNDGGRIINLSTTTLALNLPGYAIYNGTKAAV
EAFTRVFAKELRGRRITVNAVAPGPVATDLFLNGKTDEQIDTFARMPPLERLGQPEDIAGVVAFLAGKDGAWVNGQVLRA
NGGVA

Sequences:

>Translated_245_residues
MTTSSKVALITGASRGIGATIARRLASDGFAVAINYASNAAEADALVAELAQAGVSAIAVKADVSRADHVHAMFATVEDQ
LGKIDVLVNNAGVLKTAPLAQTSDELYAQNFAINTQGVFNTLREAATRLNDGGRIINLSTTTLALNLPGYAIYNGTKAAV
EAFTRVFAKELRGRRITVNAVAPGPVATDLFLNGKTDEQIDTFARMPPLERLGQPEDIAGVVAFLAGKDGAWVNGQVLRA
NGGVA
>Mature_244_residues
TTSSKVALITGASRGIGATIARRLASDGFAVAINYASNAAEADALVAELAQAGVSAIAVKADVSRADHVHAMFATVEDQL
GKIDVLVNNAGVLKTAPLAQTSDELYAQNFAINTQGVFNTLREAATRLNDGGRIINLSTTTLALNLPGYAIYNGTKAAVE
AFTRVFAKELRGRRITVNAVAPGPVATDLFLNGKTDEQIDTFARMPPLERLGQPEDIAGVVAFLAGKDGAWVNGQVLRAN
GGVA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=247, Percent_Identity=31.1740890688259, Blast_Score=115, Evalue=3e-26,
Organism=Homo sapiens, GI5031737, Length=239, Percent_Identity=31.3807531380753, Blast_Score=107, Evalue=9e-24,
Organism=Homo sapiens, GI40254992, Length=241, Percent_Identity=30.7053941908714, Blast_Score=106, Evalue=2e-23,
Organism=Homo sapiens, GI126723750, Length=250, Percent_Identity=29.6, Blast_Score=103, Evalue=1e-22,
Organism=Homo sapiens, GI15277342, Length=252, Percent_Identity=32.9365079365079, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI109715829, Length=233, Percent_Identity=30.9012875536481, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI10190704, Length=243, Percent_Identity=32.0987654320988, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI19923817, Length=253, Percent_Identity=29.2490118577075, Blast_Score=81, Evalue=9e-16,
Organism=Homo sapiens, GI33667109, Length=211, Percent_Identity=29.8578199052133, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI7705925, Length=239, Percent_Identity=27.6150627615063, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI4758504, Length=255, Percent_Identity=29.0196078431373, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI4504505, Length=188, Percent_Identity=30.3191489361702, Blast_Score=68, Evalue=9e-12,
Organism=Homo sapiens, GI31542939, Length=213, Percent_Identity=26.7605633802817, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI126723191, Length=181, Percent_Identity=29.2817679558011, Blast_Score=65, Evalue=6e-11,
Organism=Homo sapiens, GI166795268, Length=202, Percent_Identity=29.7029702970297, Blast_Score=64, Evalue=9e-11,
Organism=Escherichia coli, GI2367175, Length=244, Percent_Identity=32.7868852459016, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1788459, Length=243, Percent_Identity=33.3333333333333, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1787335, Length=247, Percent_Identity=34.0080971659919, Blast_Score=117, Evalue=8e-28,
Organism=Escherichia coli, GI1790717, Length=248, Percent_Identity=31.0483870967742, Blast_Score=114, Evalue=5e-27,
Organism=Escherichia coli, GI1789378, Length=239, Percent_Identity=31.7991631799163, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI2367365, Length=240, Percent_Identity=33.3333333333333, Blast_Score=108, Evalue=2e-25,
Organism=Escherichia coli, GI1787905, Length=240, Percent_Identity=32.5, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI87082100, Length=250, Percent_Identity=33.2, Blast_Score=101, Evalue=4e-23,
Organism=Escherichia coli, GI1789208, Length=251, Percent_Identity=29.0836653386454, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI87082160, Length=250, Percent_Identity=27.2, Blast_Score=91, Evalue=9e-20,
Organism=Escherichia coli, GI1786812, Length=254, Percent_Identity=26.3779527559055, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1787820, Length=227, Percent_Identity=27.3127753303965, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1789057, Length=258, Percent_Identity=24.8062015503876, Blast_Score=64, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17561402, Length=247, Percent_Identity=30.7692307692308, Blast_Score=105, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI17560150, Length=256, Percent_Identity=32.8125, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17560332, Length=266, Percent_Identity=33.8345864661654, Blast_Score=100, Evalue=7e-22,
Organism=Caenorhabditis elegans, GI17562990, Length=263, Percent_Identity=33.0798479087452, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI71994604, Length=250, Percent_Identity=29.2, Blast_Score=99, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17538486, Length=259, Percent_Identity=31.6602316602317, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17555706, Length=245, Percent_Identity=32.6530612244898, Blast_Score=98, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI17562910, Length=258, Percent_Identity=29.4573643410853, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI115534694, Length=247, Percent_Identity=30.3643724696356, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17559104, Length=256, Percent_Identity=33.203125, Blast_Score=95, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI71994600, Length=255, Percent_Identity=28.2352941176471, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17531453, Length=259, Percent_Identity=30.1158301158301, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI25147288, Length=242, Percent_Identity=30.9917355371901, Blast_Score=91, Evalue=7e-19,
Organism=Caenorhabditis elegans, GI17544670, Length=262, Percent_Identity=28.2442748091603, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17562904, Length=260, Percent_Identity=30.7692307692308, Blast_Score=88, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI193204405, Length=258, Percent_Identity=31.0077519379845, Blast_Score=87, Evalue=6e-18,
Organism=Caenorhabditis elegans, GI17562906, Length=258, Percent_Identity=28.2945736434109, Blast_Score=87, Evalue=9e-18,
Organism=Caenorhabditis elegans, GI72000259, Length=258, Percent_Identity=30.2325581395349, Blast_Score=86, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17565030, Length=262, Percent_Identity=31.6793893129771, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17563726, Length=258, Percent_Identity=31.0077519379845, Blast_Score=85, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17560676, Length=245, Percent_Identity=26.9387755102041, Blast_Score=84, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI17562908, Length=258, Percent_Identity=29.0697674418605, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17538480, Length=266, Percent_Identity=31.9548872180451, Blast_Score=80, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI17538182, Length=257, Percent_Identity=27.2373540856031, Blast_Score=80, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI17551412, Length=263, Percent_Identity=30.0380228136882, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17560220, Length=263, Percent_Identity=30.4182509505703, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17536025, Length=248, Percent_Identity=27.4193548387097, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI193203117, Length=224, Percent_Identity=25, Blast_Score=70, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI17561272, Length=191, Percent_Identity=27.7486910994764, Blast_Score=70, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI17568967, Length=188, Percent_Identity=28.7234042553192, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI193203115, Length=219, Percent_Identity=25.1141552511416, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17508651, Length=258, Percent_Identity=27.906976744186, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17536651, Length=250, Percent_Identity=26, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17564282, Length=195, Percent_Identity=26.1538461538462, Blast_Score=65, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6322067, Length=194, Percent_Identity=31.4432989690722, Blast_Score=73, Evalue=4e-14,
Organism=Saccharomyces cerevisiae, GI6322861, Length=237, Percent_Identity=28.6919831223629, Blast_Score=72, Evalue=9e-14,
Organism=Saccharomyces cerevisiae, GI6323882, Length=231, Percent_Identity=27.7056277056277, Blast_Score=62, Evalue=9e-11,
Organism=Drosophila melanogaster, GI24644339, Length=250, Percent_Identity=32.8, Blast_Score=115, Evalue=4e-26,
Organism=Drosophila melanogaster, GI28571526, Length=251, Percent_Identity=34.2629482071713, Blast_Score=112, Evalue=2e-25,
Organism=Drosophila melanogaster, GI24639444, Length=247, Percent_Identity=35.2226720647773, Blast_Score=108, Evalue=2e-24,
Organism=Drosophila melanogaster, GI21357041, Length=247, Percent_Identity=31.9838056680162, Blast_Score=103, Evalue=1e-22,
Organism=Drosophila melanogaster, GI24643142, Length=239, Percent_Identity=30.9623430962343, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI23397609, Length=250, Percent_Identity=33.2, Blast_Score=99, Evalue=3e-21,
Organism=Drosophila melanogaster, GI21355319, Length=253, Percent_Identity=29.6442687747036, Blast_Score=99, Evalue=4e-21,
Organism=Drosophila melanogaster, GI24644337, Length=174, Percent_Identity=33.9080459770115, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI116007236, Length=236, Percent_Identity=31.3559322033898, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI281364494, Length=234, Percent_Identity=31.6239316239316, Blast_Score=84, Evalue=6e-17,
Organism=Drosophila melanogaster, GI116007234, Length=237, Percent_Identity=32.9113924050633, Blast_Score=84, Evalue=7e-17,
Organism=Drosophila melanogaster, GI17737361, Length=257, Percent_Identity=29.5719844357977, Blast_Score=80, Evalue=9e-16,
Organism=Drosophila melanogaster, GI24663911, Length=239, Percent_Identity=29.2887029288703, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI116007238, Length=205, Percent_Identity=32.6829268292683, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI116007232, Length=179, Percent_Identity=36.8715083798883, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24665243, Length=201, Percent_Identity=29.3532338308458, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI221331218, Length=201, Percent_Identity=29.3532338308458, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24648944, Length=245, Percent_Identity=27.7551020408163, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24656154, Length=262, Percent_Identity=28.6259541984733, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI19922628, Length=262, Percent_Identity=28.6259541984733, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI21355631, Length=174, Percent_Identity=31.0344827586207, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24641232, Length=253, Percent_Identity=28.8537549407115, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24665247, Length=202, Percent_Identity=28.2178217821782, Blast_Score=67, Evalue=8e-12,
Organism=Drosophila melanogaster, GI221331216, Length=202, Percent_Identity=28.2178217821782, Blast_Score=67, Evalue=8e-12,
Organism=Drosophila melanogaster, GI24641388, Length=201, Percent_Identity=33.3333333333333, Blast_Score=67, Evalue=9e-12,
Organism=Drosophila melanogaster, GI24648693, Length=235, Percent_Identity=28.936170212766, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI21355889, Length=235, Percent_Identity=28.936170212766, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI281364892, Length=174, Percent_Identity=29.8850574712644, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI28571387, Length=202, Percent_Identity=29.7029702970297, Blast_Score=64, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 25494; Mature: 25363

Theoretical pI: Translated: 6.55; Mature: 6.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTSSKVALITGASRGIGATIARRLASDGFAVAINYASNAAEADALVAELAQAGVSAIAV
CCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCHHEEEE
KADVSRADHVHAMFATVEDQLGKIDVLVNNAGVLKTAPLAQTSDELYAQNFAINTQGVFN
EECCCCHHHHHHHHHHHHHHCCEEEEEEECCCCEEECCCCCCCHHHHHHHEEECCHHHHH
TLREAATRLNDGGRIINLSTTTLALNLPGYAIYNGTKAAVEAFTRVFAKELRGRRITVNA
HHHHHHHHCCCCCEEEEEEEEEEEEECCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEE
VAPGPVATDLFLNGKTDEQIDTFARMPPLERLGQPEDIAGVVAFLAGKDGAWVNGQVLRA
ECCCCCEEEEEECCCCCHHHHHHHCCCCHHHCCCCHHHHHHHHHHCCCCCCEECCEEEEC
NGGVA
CCCCC
>Mature Secondary Structure 
TTSSKVALITGASRGIGATIARRLASDGFAVAINYASNAAEADALVAELAQAGVSAIAV
CCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCHHEEEE
KADVSRADHVHAMFATVEDQLGKIDVLVNNAGVLKTAPLAQTSDELYAQNFAINTQGVFN
EECCCCHHHHHHHHHHHHHHCCEEEEEEECCCCEEECCCCCCCHHHHHHHEEECCHHHHH
TLREAATRLNDGGRIINLSTTTLALNLPGYAIYNGTKAAVEAFTRVFAKELRGRRITVNA
HHHHHHHHCCCCCEEEEEEEEEEEEECCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEE
VAPGPVATDLFLNGKTDEQIDTFARMPPLERLGQPEDIAGVVAFLAGKDGAWVNGQVLRA
ECCCCCEEEEEECCCCCHHHHHHHCCCCHHHCCCCHHHHHHHHHHCCCCCCEECCEEEEC
NGGVA
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8868443 [H]