BacMap

Definition	Ralstonia eutropha JMP134 chromosome 1, complete sequence.
Accession	NC_007347
Length	3,806,533

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The map label for this gene is yohF [C]

Identifier: 73541242

GI number: 73541242

Start: 1672250

End: 1673017

Strand: Direct

Name: yohF [C]

Synonym: Reut_A1552

Alternate gene names: 73541242

Gene position: 1672250-1673017 (Clockwise)

Preceding gene: 73541241

Following gene: 73541245

Centisome position: 43.93

GC content: 65.1

Gene sequence:

>768_bases
ATGAAGCAAGAAGGTAGGGTGAAGGGCAAAGTCGCCCTGGTCACCGGCGCGGCCAGCGGCGTCGGCCGTGCGGACGCGCT
GCTGCTGGCCGCAGAAGGCGCGAGGGTGGTACTGAGCGACGTCAACGAAGAAGCGGGCCAGGCGCTGGCGCGCGAGATCG
GTGACGCGGCGCTGTTCGTCCGTCACGACATCGCTAGCGAGGAGGACTGGCGCAGTGTCATGGCGGCTGCACTGGATCGC
TTCGGACGGCTGGACGTGCTGGTGAACAATGCCGCGATCTGTCCGCTCGGCTCGATCGAGGAAACCTCGCTCGAATGCTG
GCGGCAGGTCATGCGCGTCAATGCCGATGGCTATTTCCTCGGCTGCCGTTTCGGCGTGGCGGCGATGAAAGGCAATGAGG
CCGGCGGCTCGATCGTGATGATGTCTTCGGTGGCAGCGCTGGGCGGCCTGCCGATGATGTGCGCGTACACCGGTTCGAAA
GGCGCTGTCACCGCGCTGACGCGCAGCGTAGCGGCGCATTGCAAGCAGCAGGGCTACCGCATCCGCTGCAACTCGATCCA
CCCGGACGGTATCTGGACCCCGATGACGCAGGCGCTCGTGCCGGATCTCGACCCGGTCGCACTCGGTATCGGCACAGACC
CGATGGCGCGCATGTGCAACCCTGAGGATGTCGCCAACCTGGTGCTGTTCCTCGCCTCGGATGCATCGCGCTTCATCAAT
GGCGCTGAACTGCGCATCGACAATGCACAGCTGATCTCGTCGCTGTGA

Upstream 100 bases:

>100_bases
ATCGCTGCCATGTACGGCAGGGCCGCGCTGGACGACGTGCTTGCCGGCAGGATTCCGGCCGCGGCATGAACGGCCGGCAC
AACGAAGGAGGAGAACGCAG

Downstream 100 bases:

>100_bases
CGAGGACGCGGCAGCCGCCAGTACGGAGCTGCCGCGTTCTGGTTAAGCGCTGTATTGCGCGACGATCTCCCTGACAGTGC
GTGCGATGTCCTGGCGGCGA

Product: Short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MKQEGRVKGKVALVTGAASGVGRADALLLAAEGARVVLSDVNEEAGQALAREIGDAALFVRHDIASEEDWRSVMAAALDR
FGRLDVLVNNAAICPLGSIEETSLECWRQVMRVNADGYFLGCRFGVAAMKGNEAGGSIVMMSSVAALGGLPMMCAYTGSK
GAVTALTRSVAAHCKQQGYRIRCNSIHPDGIWTPMTQALVPDLDPVALGIGTDPMARMCNPEDVANLVLFLASDASRFIN
GAELRIDNAQLISSL

Sequences:

>Translated_255_residues
MKQEGRVKGKVALVTGAASGVGRADALLLAAEGARVVLSDVNEEAGQALAREIGDAALFVRHDIASEEDWRSVMAAALDR
FGRLDVLVNNAAICPLGSIEETSLECWRQVMRVNADGYFLGCRFGVAAMKGNEAGGSIVMMSSVAALGGLPMMCAYTGSK
GAVTALTRSVAAHCKQQGYRIRCNSIHPDGIWTPMTQALVPDLDPVALGIGTDPMARMCNPEDVANLVLFLASDASRFIN
GAELRIDNAQLISSL
>Mature_255_residues
MKQEGRVKGKVALVTGAASGVGRADALLLAAEGARVVLSDVNEEAGQALAREIGDAALFVRHDIASEEDWRSVMAAALDR
FGRLDVLVNNAAICPLGSIEETSLECWRQVMRVNADGYFLGCRFGVAAMKGNEAGGSIVMMSSVAALGGLPMMCAYTGSK
GAVTALTRSVAAHCKQQGYRIRCNSIHPDGIWTPMTQALVPDLDPVALGIGTDPMARMCNPEDVANLVLFLASDASRFIN
GAELRIDNAQLISSL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI59889578, Length=219, Percent_Identity=34.703196347032, Blast_Score=121, Evalue=7e-28,
Organism=Homo sapiens, GI15277342, Length=257, Percent_Identity=34.2412451361868, Blast_Score=109, Evalue=3e-24,
Organism=Homo sapiens, GI4758504, Length=254, Percent_Identity=33.8582677165354, Blast_Score=108, Evalue=5e-24,
Organism=Homo sapiens, GI31542939, Length=261, Percent_Identity=31.8007662835249, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI83715985, Length=255, Percent_Identity=32.5490196078431, Blast_Score=102, Evalue=5e-22,
Organism=Homo sapiens, GI32483357, Length=246, Percent_Identity=32.520325203252, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI66933014, Length=252, Percent_Identity=31.7460317460317, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI224922801, Length=175, Percent_Identity=37.7142857142857, Blast_Score=96, Evalue=4e-20,
Organism=Homo sapiens, GI4504505, Length=239, Percent_Identity=32.6359832635983, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI19923817, Length=256, Percent_Identity=29.296875, Blast_Score=92, Evalue=4e-19,
Organism=Homo sapiens, GI40254992, Length=246, Percent_Identity=32.1138211382114, Blast_Score=92, Evalue=4e-19,
Organism=Homo sapiens, GI5031737, Length=251, Percent_Identity=29.0836653386454, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI7705925, Length=245, Percent_Identity=29.3877551020408, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI109715829, Length=236, Percent_Identity=27.9661016949153, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI126723191, Length=194, Percent_Identity=31.9587628865979, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI10190704, Length=249, Percent_Identity=28.1124497991968, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI126723750, Length=249, Percent_Identity=28.1124497991968, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI4503301, Length=252, Percent_Identity=25.7936507936508, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI33667109, Length=188, Percent_Identity=31.9148936170213, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI20149619, Length=205, Percent_Identity=28.780487804878, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI146231950, Length=215, Percent_Identity=29.3023255813954, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI40807363, Length=218, Percent_Identity=29.3577981651376, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI1788459, Length=253, Percent_Identity=29.2490118577075, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI87082100, Length=256, Percent_Identity=34.375, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI2367175, Length=243, Percent_Identity=36.2139917695473, Blast_Score=104, Evalue=5e-24,
Organism=Escherichia coli, GI1787335, Length=242, Percent_Identity=30.9917355371901, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI87082160, Length=249, Percent_Identity=30.5220883534137, Blast_Score=101, Evalue=4e-23,
Organism=Escherichia coli, GI1787905, Length=248, Percent_Identity=31.4516129032258, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1790717, Length=249, Percent_Identity=31.3253012048193, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1789378, Length=249, Percent_Identity=30.1204819277108, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1789208, Length=251, Percent_Identity=30.2788844621514, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1786812, Length=250, Percent_Identity=32.4, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1787526, Length=242, Percent_Identity=28.5123966942149, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1789057, Length=259, Percent_Identity=27.7992277992278, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI2367365, Length=248, Percent_Identity=27.8225806451613, Blast_Score=66, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17538182, Length=254, Percent_Identity=34.251968503937, Blast_Score=115, Evalue=3e-26,
Organism=Caenorhabditis elegans, GI17561402, Length=251, Percent_Identity=33.4661354581673, Blast_Score=111, Evalue=5e-25,
Organism=Caenorhabditis elegans, GI25147288, Length=243, Percent_Identity=33.7448559670782, Blast_Score=107, Evalue=8e-24,
Organism=Caenorhabditis elegans, GI17531453, Length=264, Percent_Identity=34.8484848484849, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17555706, Length=241, Percent_Identity=32.3651452282158, Blast_Score=98, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI71994604, Length=247, Percent_Identity=30.3643724696356, Blast_Score=98, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI17560676, Length=243, Percent_Identity=31.2757201646091, Blast_Score=97, Evalue=8e-21,
Organism=Caenorhabditis elegans, GI17562906, Length=263, Percent_Identity=30.7984790874525, Blast_Score=96, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI193204405, Length=267, Percent_Identity=31.0861423220974, Blast_Score=96, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17562910, Length=274, Percent_Identity=31.021897810219, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17559104, Length=261, Percent_Identity=29.8850574712644, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17538480, Length=269, Percent_Identity=30.4832713754647, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17562908, Length=263, Percent_Identity=29.6577946768061, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17551412, Length=265, Percent_Identity=29.811320754717, Blast_Score=88, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI17563726, Length=251, Percent_Identity=29.0836653386454, Blast_Score=87, Evalue=7e-18,
Organism=Caenorhabditis elegans, GI17536651, Length=263, Percent_Identity=28.8973384030418, Blast_Score=86, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI71994600, Length=248, Percent_Identity=27.0161290322581, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17567345, Length=197, Percent_Identity=30.9644670050761, Blast_Score=84, Evalue=8e-17,
Organism=Caenorhabditis elegans, GI17560220, Length=267, Percent_Identity=28.4644194756554, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17536025, Length=257, Percent_Identity=28.7937743190661, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17562904, Length=261, Percent_Identity=28.735632183908, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17544670, Length=272, Percent_Identity=29.0441176470588, Blast_Score=80, Evalue=9e-16,
Organism=Caenorhabditis elegans, GI72000259, Length=274, Percent_Identity=30.6569343065693, Blast_Score=80, Evalue=9e-16,
Organism=Caenorhabditis elegans, GI17560150, Length=264, Percent_Identity=27.2727272727273, Blast_Score=80, Evalue=9e-16,
Organism=Caenorhabditis elegans, GI115534694, Length=246, Percent_Identity=30.0813008130081, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17560332, Length=262, Percent_Identity=28.6259541984733, Blast_Score=77, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI17568967, Length=215, Percent_Identity=30.2325581395349, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17565030, Length=268, Percent_Identity=29.4776119402985, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17564282, Length=208, Percent_Identity=29.3269230769231, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17562990, Length=243, Percent_Identity=27.9835390946502, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71997402, Length=164, Percent_Identity=29.8780487804878, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI193203117, Length=208, Percent_Identity=25.9615384615385, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17538486, Length=208, Percent_Identity=28.8461538461538, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI193203115, Length=207, Percent_Identity=26.0869565217391, Blast_Score=67, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6322861, Length=243, Percent_Identity=27.5720164609054, Blast_Score=75, Evalue=1e-14,
Organism=Drosophila melanogaster, GI17737361, Length=254, Percent_Identity=36.6141732283465, Blast_Score=124, Evalue=7e-29,
Organism=Drosophila melanogaster, GI21357041, Length=252, Percent_Identity=36.9047619047619, Blast_Score=121, Evalue=5e-28,
Organism=Drosophila melanogaster, GI24639444, Length=247, Percent_Identity=34.412955465587, Blast_Score=110, Evalue=1e-24,
Organism=Drosophila melanogaster, GI28571526, Length=248, Percent_Identity=33.4677419354839, Blast_Score=108, Evalue=3e-24,
Organism=Drosophila melanogaster, GI21355319, Length=243, Percent_Identity=29.2181069958848, Blast_Score=108, Evalue=4e-24,
Organism=Drosophila melanogaster, GI24644339, Length=250, Percent_Identity=32.8, Blast_Score=108, Evalue=4e-24,
Organism=Drosophila melanogaster, GI24644337, Length=252, Percent_Identity=32.5396825396825, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI23397609, Length=246, Percent_Identity=31.7073170731707, Blast_Score=94, Evalue=7e-20,
Organism=Drosophila melanogaster, GI18859837, Length=207, Percent_Identity=33.3333333333333, Blast_Score=88, Evalue=4e-18,
Organism=Drosophila melanogaster, GI24643142, Length=245, Percent_Identity=28.5714285714286, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI28571387, Length=240, Percent_Identity=27.9166666666667, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI281364892, Length=193, Percent_Identity=29.5336787564767, Blast_Score=74, Evalue=7e-14,
Organism=Drosophila melanogaster, GI24641232, Length=236, Percent_Identity=29.6610169491525, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI21355631, Length=177, Percent_Identity=28.8135593220339, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24640492, Length=193, Percent_Identity=30.0518134715026, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24580925, Length=180, Percent_Identity=29.4444444444444, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24647946, Length=211, Percent_Identity=27.0142180094787, Blast_Score=68, Evalue=7e-12,
Organism=Drosophila melanogaster, GI116007236, Length=234, Percent_Identity=26.0683760683761, Blast_Score=64, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: =1.1.1.51 [H]

Molecular weight: Translated: 26867; Mature: 26867

Theoretical pI: Translated: 5.10; Mature: 5.10

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
7.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQEGRVKGKVALVTGAASGVGRADALLLAAEGARVVLSDVNEEAGQALAREIGDAALFV
CCCCCCCCEEEEEEEECCCCCCCCCEEEEECCCCEEEEECCCHHHHHHHHHHHCCCEEEE
RHDIASEEDWRSVMAAALDRFGRLDVLVNNAAICPLGSIEETSLECWRQVMRVNADGYFL
ECCCCCCHHHHHHHHHHHHHCCCEEEEECCEEECCCCCCCHHHHHHHHHHHHCCCCCEEE
GCRFGVAAMKGNEAGGSIVMMSSVAALGGLPMMCAYTGSKGAVTALTRSVAAHCKQQGYR
EEEECEEEECCCCCCCCEEEEHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCE
IRCNSIHPDGIWTPMTQALVPDLDPVALGIGTDPMARMCNPEDVANLVLFLASDASRFIN
EEECCCCCCCCCCCHHHHHCCCCCCEEEECCCCHHHHCCCHHHHHHHHHHHHCCHHHHCC
GAELRIDNAQLISSL
CCEEEECHHHHHHCC
>Mature Secondary Structure
MKQEGRVKGKVALVTGAASGVGRADALLLAAEGARVVLSDVNEEAGQALAREIGDAALFV
CCCCCCCCEEEEEEEECCCCCCCCCEEEEECCCCEEEEECCCHHHHHHHHHHHCCCEEEE
RHDIASEEDWRSVMAAALDRFGRLDVLVNNAAICPLGSIEETSLECWRQVMRVNADGYFL
ECCCCCCHHHHHHHHHHHHHCCCEEEEECCEEECCCCCCCHHHHHHHHHHHHCCCCCEEE
GCRFGVAAMKGNEAGGSIVMMSSVAALGGLPMMCAYTGSKGAVTALTRSVAAHCKQQGYR
EEEECEEEECCCCCCCCEEEEHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCE
IRCNSIHPDGIWTPMTQALVPDLDPVALGIGTDPMARMCNPEDVANLVLFLASDASRFIN
EEECCCCCCCCCCCHHHHHCCCCCCEEEECCCCHHHHCCCHHHHHHHHHHHHCCHHHHCC
GAELRIDNAQLISSL
CCEEEECHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8382516; 2026158; 8617258 [H]