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The map label for this gene is ndoA [H]

Identifier: 73541175

GI number: 73541175

Start: 1604280

End: 1604612

Strand: Direct

Name: ndoA [H]

Synonym: Reut_A1482

Alternate gene names: 73541175

Gene position: 1604280-1604612 (Clockwise)

Preceding gene: 73541173

Following gene: 73541176

Centisome position: 42.15

GC content: 55.86

Gene sequence:

>333_bases
ATGCACAAAGGTGATGATGTTTGTAGCGTCGCGGAATTAAAGCCAGGCGAAATGAAATGTGTCTTCGTAGAAGGCACGCG
GATTCTGCTCTCTAACGTGGACGGCAAGGTGTACGCGACCAGTGATGTCTGTTCGCACGCTTTGGCCTATCTGTCGGACG
GCTGGCTCGAGGGATCAGTGGTCGAATGTCCGCTCCATGGTGCGCAATTCGATGTCGTCACAGGAAAGGCGTTGTCGGCG
CCGGCAAACGGAGACATTGAAACCTACGGGGTCACGGTGGCCGATGGCAGGATCTTTGTAGCCTCTGCCCAGTTGACGTC
CGCGAAAGGCTGA

Upstream 100 bases:

>100_bases
GTCGCGCAATGTAAATCGGCAGATCGGCTGTCAGATTTGTCGATTGAATCTGCATATGTGAAACAGTGTCAGGCGAAATT
CGGTGGAAGAGAGGTGAAGC

Downstream 100 bases:

>100_bases
GGCGGGCCCATGGATTCGACAATCGCTCGATCTGAGCGTGGAGGAAAACTGATATGTCTTTCGAAACAGCATTGACCAAA
GCACTTAATTTGCGCGTTCC

Product: Rieske (2Fe-2S) region

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 110; Mature: 110

Protein sequence:

>110_residues
MHKGDDVCSVAELKPGEMKCVFVEGTRILLSNVDGKVYATSDVCSHALAYLSDGWLEGSVVECPLHGAQFDVVTGKALSA
PANGDIETYGVTVADGRIFVASAQLTSAKG

Sequences:

>Translated_110_residues
MHKGDDVCSVAELKPGEMKCVFVEGTRILLSNVDGKVYATSDVCSHALAYLSDGWLEGSVVECPLHGAQFDVVTGKALSA
PANGDIETYGVTVADGRIFVASAQLTSAKG
>Mature_110_residues
MHKGDDVCSVAELKPGEMKCVFVEGTRILLSNVDGKVYATSDVCSHALAYLSDGWLEGSVVECPLHGAQFDVVTGKALSA
PANGDIETYGVTVADGRIFVASAQLTSAKG

Specific function: Component of naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyzes the incorporation of both atoms of molecular oxygen into naphthalene to form cis- naphthalene dihydrodiol. This subunit is a 2Fe-2S ferredoxin that transfers electrons

COG id: COG2146

COG function: function code PR; Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Rieske domain [H]

Homologues:

Organism=Escherichia coli, GI1788890, Length=94, Percent_Identity=45.7446808510638, Blast_Score=72, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI17559934, Length=95, Percent_Identity=31.5789473684211, Blast_Score=63, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017941 [H]

Pfam domain/function: PF00355 Rieske [H]

EC number: NA

Molecular weight: Translated: 11448; Mature: 11448

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
3.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHKGDDVCSVAELKPGEMKCVFVEGTRILLSNVDGKVYATSDVCSHALAYLSDGWLEGSV
CCCCCCCEEEECCCCCCEEEEEECCCEEEEECCCCEEEEEHHHHHHHHHHHCCCCCCCCE
VECPLHGAQFDVVTGKALSAPANGDIETYGVTVADGRIFVASAQLTSAKG
EECCCCCCEEEEEECCEECCCCCCCEEEEEEEEECCEEEEEECEEECCCC
>Mature Secondary Structure
MHKGDDVCSVAELKPGEMKCVFVEGTRILLSNVDGKVYATSDVCSHALAYLSDGWLEGSV
CCCCCCCEEEECCCCCCEEEEEECCCEEEEECCCCEEEEEHHHHHHHHHHHCCCCCCCCE
VECPLHGAQFDVVTGKALSAPANGDIETYGVTVADGRIFVASAQLTSAKG
EECCCCCCEEEEEECCEECCCCCCCEEEEEEEEECCEEEEEECEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA