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The map label for this gene is nocR [H]

Identifier: 73541144

GI number: 73541144

Start: 1564640

End: 1565689

Strand: Reverse

Name: nocR [H]

Synonym: Reut_A1450

Alternate gene names: 73541144

Gene position: 1565689-1564640 (Counterclockwise)

Preceding gene: 73541149

Following gene: 73541143

Centisome position: 41.13

GC content: 68.29

Gene sequence:

>1050_bases
ATGATTGACCATGCAGAATCCATAATTCGCATACAAACACGTTCGCCTTTGATGGAAATCCGGCAACTCGAAGCCTTTGC
AGCGGTCGTCACGACCGGCAGCGTCACCGCCGCCGGCCGCCTGCTCGGCCGCTCGCAGCCCGCTATCACTCGGCTGATCC
AGGAGCTGGAAGGCGAACTGGGCTTCGCGCTGTTCACGCGCAGCGGTCCGCGCGTGAGCCCTACGGAGCAAGGCTTCCTG
CTCTATGACGAGGTGGAACAGACGCTGGCGGGGCTGCAGCAGATCCGCATGCGTGCTGCAGCGCTTGCACGTGGCGATGG
CCGGCCGCTGCGCATCGCCGCCACGCCGGCACTGTCGGCCGGCTTGCTGCCCGCCGCGCTCGCGCTGGCGTTCGGGCGCG
GGCTGTGCGCGCCGGAGCGCGTGGAAGTGCAGAGTGTGTCGCCCGAGCAGGTCGTGCATGCGGTGCTGACCGGCGCGGCC
GAAATCGGCGTGAACAGCCTGCCGCTCGAACACCGCGGCGTGAACGTCCATTGGATCGGACAGGCCGGCTGCGTGGCGGC
GATGCGCGTCGACGATCCACTCGCGGCCTGCGAGACTGTGCGCCTGGCGGACTGCCGCGACCGCCGCATCGTCACGATGC
AGAACCCGTACCGCCTGCGGCGCCGAACGGATGCCGCCTTCAAGCGCGCTGGCATCGGCCCGGCCGGCGTGATCGACACC
AATACGTCGATCAATGCGCTGACACTGGTGCGCGCCGGGCTCGGCATCGCCGTACTGGAACCCATAACCGCGCGCGGCCT
GCCGCTCGCCGACATCGCCGTGCGCCCCGTCGACGCGGACATCCCGTTCTATTTCGGCGTGATCACGCCGCAAGCGCGCC
CGGCCAGTGCCGTCGTACTCGGACTGGTCGACCTGCTGGCCGAGGCCTCTGCCGCGCTGCTGCCTGATTTCGTGCGCCGC
GGTCCCGCCGAACATGGCGCGCTACTGCAGTCGCTGTATGGCGACGGCGCAGCCCCGACTGAAGATATCGAATCCCTGAG
TCATGACTGA

Upstream 100 bases:

>100_bases
GCTCCGGCGGGGCGTGGTTGGCCGATGTGCATCCGGCATCTCTACATCATAGGCGGGCGCGTGCGCATGACGTCATAGCG
AAATAGTATTTGCAATTCGC

Downstream 100 bases:

>100_bases
CACCAACACCCCATGCGGCGCGGCTGGCCTGGCCGCGCTCGAAGCGCGTTTGCGCCAGGATCTTGCCTGGCTGGAACTGC
CGGCCAAGGCCTGGACCATG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 349; Mature: 349

Protein sequence:

>349_residues
MIDHAESIIRIQTRSPLMEIRQLEAFAAVVTTGSVTAAGRLLGRSQPAITRLIQELEGELGFALFTRSGPRVSPTEQGFL
LYDEVEQTLAGLQQIRMRAAALARGDGRPLRIAATPALSAGLLPAALALAFGRGLCAPERVEVQSVSPEQVVHAVLTGAA
EIGVNSLPLEHRGVNVHWIGQAGCVAAMRVDDPLAACETVRLADCRDRRIVTMQNPYRLRRRTDAAFKRAGIGPAGVIDT
NTSINALTLVRAGLGIAVLEPITARGLPLADIAVRPVDADIPFYFGVITPQARPASAVVLGLVDLLAEASAALLPDFVRR
GPAEHGALLQSLYGDGAAPTEDIESLSHD

Sequences:

>Translated_349_residues
MIDHAESIIRIQTRSPLMEIRQLEAFAAVVTTGSVTAAGRLLGRSQPAITRLIQELEGELGFALFTRSGPRVSPTEQGFL
LYDEVEQTLAGLQQIRMRAAALARGDGRPLRIAATPALSAGLLPAALALAFGRGLCAPERVEVQSVSPEQVVHAVLTGAA
EIGVNSLPLEHRGVNVHWIGQAGCVAAMRVDDPLAACETVRLADCRDRRIVTMQNPYRLRRRTDAAFKRAGIGPAGVIDT
NTSINALTLVRAGLGIAVLEPITARGLPLADIAVRPVDADIPFYFGVITPQARPASAVVLGLVDLLAEASAALLPDFVRR
GPAEHGALLQSLYGDGAAPTEDIESLSHD
>Mature_349_residues
MIDHAESIIRIQTRSPLMEIRQLEAFAAVVTTGSVTAAGRLLGRSQPAITRLIQELEGELGFALFTRSGPRVSPTEQGFL
LYDEVEQTLAGLQQIRMRAAALARGDGRPLRIAATPALSAGLLPAALALAFGRGLCAPERVEVQSVSPEQVVHAVLTGAA
EIGVNSLPLEHRGVNVHWIGQAGCVAAMRVDDPLAACETVRLADCRDRRIVTMQNPYRLRRRTDAAFKRAGIGPAGVIDT
NTSINALTLVRAGLGIAVLEPITARGLPLADIAVRPVDADIPFYFGVITPQARPASAVVLGLVDLLAEASAALLPDFVRR
GPAEHGALLQSLYGDGAAPTEDIESLSHD

Specific function: Positive regulatory protein for the noc operon involved in nopaline catabolism and uptake [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789204, Length=284, Percent_Identity=28.169014084507, Blast_Score=104, Evalue=9e-24,
Organism=Escherichia coli, GI157672245, Length=239, Percent_Identity=28.0334728033473, Blast_Score=75, Evalue=8e-15,
Organism=Escherichia coli, GI1788481, Length=144, Percent_Identity=36.1111111111111, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1787530, Length=315, Percent_Identity=26.984126984127, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1788887, Length=268, Percent_Identity=24.2537313432836, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 36937; Mature: 36937

Theoretical pI: Translated: 6.26; Mature: 6.26

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDHAESIIRIQTRSPLMEIRQLEAFAAVVTTGSVTAAGRLLGRSQPAITRLIQELEGEL
CCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHCCCC
GFALFTRSGPRVSPTEQGFLLYDEVEQTLAGLQQIRMRAAALARGDGRPLRIAATPALSA
CEEEEECCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHH
GLLPAALALAFGRGLCAPERVEVQSVSPEQVVHAVLTGAAEIGVNSLPLEHRGVNVHWIG
HHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEC
QAGCVAAMRVDDPLAACETVRLADCRDRRIVTMQNPYRLRRRTDAAFKRAGIGPAGVIDT
CCCCEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCEEEC
NTSINALTLVRAGLGIAVLEPITARGLPLADIAVRPVDADIPFYFGVITPQARPASAVVL
CCCCHHHHHHHHCCCEEEECCHHHCCCCHHHEEEECCCCCCCEEEEEECCCCCCHHHHHH
GLVDLLAEASAALLPDFVRRGPAEHGALLQSLYGDGAAPTEDIESLSHD
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHCCCC
>Mature Secondary Structure
MIDHAESIIRIQTRSPLMEIRQLEAFAAVVTTGSVTAAGRLLGRSQPAITRLIQELEGEL
CCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHCCCC
GFALFTRSGPRVSPTEQGFLLYDEVEQTLAGLQQIRMRAAALARGDGRPLRIAATPALSA
CEEEEECCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHH
GLLPAALALAFGRGLCAPERVEVQSVSPEQVVHAVLTGAAEIGVNSLPLEHRGVNVHWIG
HHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEC
QAGCVAAMRVDDPLAACETVRLADCRDRRIVTMQNPYRLRRRTDAAFKRAGIGPAGVIDT
CCCCEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCEEEC
NTSINALTLVRAGLGIAVLEPITARGLPLADIAVRPVDADIPFYFGVITPQARPASAVVL
CCCCHHHHHHHHCCCEEEECCHHHCCCCHHHEEEECCCCCCCEEEEEECCCCCCHHHHHH
GLVDLLAEASAALLPDFVRRGPAEHGALLQSLYGDGAAPTEDIESLSHD
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1799698; 11743193; 11743194 [H]