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The map label for this gene is yhjC [C]

Identifier: 73541136

GI number: 73541136

Start: 1555957

End: 1556904

Strand: Direct

Name: yhjC [C]

Synonym: Reut_A1442

Alternate gene names: 73541136

Gene position: 1555957-1556904 (Clockwise)

Preceding gene: 73541133

Following gene: 73541137

Centisome position: 40.88

GC content: 66.46

Gene sequence:

>948_bases
ATGCAGGACCTTAACGATCTGTCGCTGTTTGCCCAGGTGGTAGAGCACGGCAGCTTTTCCGCAGCCAGCCGCGCCACGGG
GATTCCCAAGTCGCGCCTGAGCCGGCGTATTGCCCAGCTCGAACGCGACCTCGGCGTGCAGCTGTTGCGCCGTACGACCC
GCCAGGTGCGTGTCACTCCGCTTGGAGAGTCTTACTACGAGCGTTGCCGGGCCATGCTGAAGGAGGCAGAGGCCGCGCAC
GAAGTGATCGAGCAGGCGCGCGACCAGCCTGGCGGTACACTGCGCGTGAGCTGCCCGGTGGCCATCGCGCAGATCCTGCT
GGCGCCGGCGATCGGCCATTTCATGCGCGCGAATCCGGCCGTACGCATCGAGCTGGAGGCCACGAATCGACGCGTCGACG
TGATCGGCGAGGGCTATGACCTGTCCTTGCGCGTACGCGATGTCCTGGAGGACTCGAGTCTTGCCGTGCGTACCTTCGGT
GAAAGCCAGCTCATGCTCGTGGCCAGCCCCGGCCTGCTCGACAGTATCGGCCGCCCGCGTACGCCGCAGGCGCTCGACGG
CATGCCAGGCGTCGGGCAAAAGCCGCACGACGGCAAGCATGTCTGGGTCCTCGGCTGCAAGAGCGGCGAGACAATCCAGA
TCGCCTACGACCCACGCCTGGTCACGGACGAGTTCTCGCTGCTGCGCGAGGCAGCGATTGCAGGCATCGGCGTTGCCATG
CTGCCGCGCATGTACTGCCGCGATGCGATCGATGCCGGCGAGCTGGAACTGCTCCTGCCCCAGTGGGAAATGCCCGTGGG
CACGCTGCACGCGGTATTTCCGTCGCGCAAGGGCGTGACGCCTGCCGTCCGGCGCTTTCTCGATTTCCTCAGCGAGATCC
TGCCCGAAAATGCGCGCAAGGTCGGCATGCACGAGCCACGCCAGCCGGCCATGCACCGCGCCGTCTGA

Upstream 100 bases:

>100_bases
ATTGGTGTCGGTAGTGAGGCAAAATGCAAATAATTGTTCTATTCATGCAACGAGCGTCGGGATCCCTGTCCATGGTTTCG
TTGCACAGGCGGAGGCCGAT

Downstream 100 bases:

>100_bases
CGGCGGTGCCATGGAGCGCATTCGCCACGCTTGCGCCTTTACCTTCACGCCACGGGGCACTAAGGTACAGGGGCGAGCCC
CGTTGCGTGCGGGCGAAGTC

Product: regulatory protein, LysR:LysR, substrate-binding

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MQDLNDLSLFAQVVEHGSFSAASRATGIPKSRLSRRIAQLERDLGVQLLRRTTRQVRVTPLGESYYERCRAMLKEAEAAH
EVIEQARDQPGGTLRVSCPVAIAQILLAPAIGHFMRANPAVRIELEATNRRVDVIGEGYDLSLRVRDVLEDSSLAVRTFG
ESQLMLVASPGLLDSIGRPRTPQALDGMPGVGQKPHDGKHVWVLGCKSGETIQIAYDPRLVTDEFSLLREAAIAGIGVAM
LPRMYCRDAIDAGELELLLPQWEMPVGTLHAVFPSRKGVTPAVRRFLDFLSEILPENARKVGMHEPRQPAMHRAV

Sequences:

>Translated_315_residues
MQDLNDLSLFAQVVEHGSFSAASRATGIPKSRLSRRIAQLERDLGVQLLRRTTRQVRVTPLGESYYERCRAMLKEAEAAH
EVIEQARDQPGGTLRVSCPVAIAQILLAPAIGHFMRANPAVRIELEATNRRVDVIGEGYDLSLRVRDVLEDSSLAVRTFG
ESQLMLVASPGLLDSIGRPRTPQALDGMPGVGQKPHDGKHVWVLGCKSGETIQIAYDPRLVTDEFSLLREAAIAGIGVAM
LPRMYCRDAIDAGELELLLPQWEMPVGTLHAVFPSRKGVTPAVRRFLDFLSEILPENARKVGMHEPRQPAMHRAV
>Mature_315_residues
MQDLNDLSLFAQVVEHGSFSAASRATGIPKSRLSRRIAQLERDLGVQLLRRTTRQVRVTPLGESYYERCRAMLKEAEAAH
EVIEQARDQPGGTLRVSCPVAIAQILLAPAIGHFMRANPAVRIELEATNRRVDVIGEGYDLSLRVRDVLEDSSLAVRTFG
ESQLMLVASPGLLDSIGRPRTPQALDGMPGVGQKPHDGKHVWVLGCKSGETIQIAYDPRLVTDEFSLLREAAIAGIGVAM
LPRMYCRDAIDAGELELLLPQWEMPVGTLHAVFPSRKGVTPAVRRFLDFLSEILPENARKVGMHEPRQPAMHRAV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=297, Percent_Identity=31.986531986532, Blast_Score=156, Evalue=2e-39,
Organism=Escherichia coli, GI1789639, Length=307, Percent_Identity=30.2931596091205, Blast_Score=143, Evalue=1e-35,
Organism=Escherichia coli, GI1786401, Length=288, Percent_Identity=32.2916666666667, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI1787128, Length=289, Percent_Identity=27.3356401384083, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI87081978, Length=295, Percent_Identity=29.1525423728814, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1789440, Length=259, Percent_Identity=26.2548262548263, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1787589, Length=291, Percent_Identity=26.8041237113402, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1788706, Length=300, Percent_Identity=25, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI87082132, Length=310, Percent_Identity=26.1290322580645, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1788481, Length=300, Percent_Identity=25.6666666666667, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1787601, Length=188, Percent_Identity=27.1276595744681, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1789173, Length=253, Percent_Identity=26.0869565217391, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI157672245, Length=120, Percent_Identity=30.8333333333333, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI145693105, Length=154, Percent_Identity=28.5714285714286, Blast_Score=65, Evalue=8e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34749; Mature: 34749

Theoretical pI: Translated: 8.02; Mature: 8.02

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDLNDLSLFAQVVEHGSFSAASRATGIPKSRLSRRIAQLERDLGVQLLRRTTRQVRVTP
CCCHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEE
LGESYYERCRAMLKEAEAAHEVIEQARDQPGGTLRVSCPVAIAQILLAPAIGHFMRANPA
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCC
VRIELEATNRRVDVIGEGYDLSLRVRDVLEDSSLAVRTFGESQLMLVASPGLLDSIGRPR
EEEEEECCCCEEEEEECCCEEEEEHHHHHCCCCEEEEECCCCEEEEEECCCHHHHCCCCC
TPQALDGMPGVGQKPHDGKHVWVLGCKSGETIQIAYDPRLVTDEFSLLREAAIAGIGVAM
CCHHHCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCEEEHHHHHHHHHHHHHHHHHHH
LPRMYCRDAIDAGELELLLPQWEMPVGTLHAVFPSRKGVTPAVRRFLDFLSEILPENARK
HHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHH
VGMHEPRQPAMHRAV
CCCCCCCCCHHHCCC
>Mature Secondary Structure
MQDLNDLSLFAQVVEHGSFSAASRATGIPKSRLSRRIAQLERDLGVQLLRRTTRQVRVTP
CCCHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEE
LGESYYERCRAMLKEAEAAHEVIEQARDQPGGTLRVSCPVAIAQILLAPAIGHFMRANPA
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCC
VRIELEATNRRVDVIGEGYDLSLRVRDVLEDSSLAVRTFGESQLMLVASPGLLDSIGRPR
EEEEEECCCCEEEEEECCCEEEEEHHHHHCCCCEEEEECCCCEEEEEECCCHHHHCCCCC
TPQALDGMPGVGQKPHDGKHVWVLGCKSGETIQIAYDPRLVTDEFSLLREAAIAGIGVAM
CCHHHCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCEEEHHHHHHHHHHHHHHHHHHH
LPRMYCRDAIDAGELELLLPQWEMPVGTLHAVFPSRKGVTPAVRRFLDFLSEILPENARK
HHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHH
VGMHEPRQPAMHRAV
CCCCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]